TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126786.10 - phase: 0 /pseudo
         (1308 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8301                                                                 70  3e-12
TC12416 similar to GB|AAH56066.1|33417132|BC056066 sop-prov prot...    35  0.10
BP066094                                                               30  3.2
TC13414 homologue to UP|Q84TL5 (Q84TL5) At1g75760, partial (39%)       28  7.2
TC19497 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarity...    28  7.2
TC17101 similar to UP|PIN4_MOUSE (Q9CWW6) Peptidyl-prolyl cis-tr...    28  9.4

>TC8301 
          Length = 1243

 Score = 69.7 bits (169), Expect = 3e-12
 Identities = 39/105 (37%), Positives = 64/105 (60%)
 Frame = +2

Query: 2   MGSK*DIEKFTGGNDFGLWKVKMRAILIQQKCVEALKGEAQMAAHLTPAEKTELNDKAVS 61
           M +K +I KF+G N F LWK+K++AIL +  C+ A+ G     A +T  +  E++D AV+
Sbjct: 500 MAAKFEIPKFSGSN-FSLWKLKIKAILRKDNCLPAIDGRP---ADITDDKWKEMDDNAVA 667

Query: 62  AIIMCLGDKVLREVSRETTAVSMWNKLDSLYMTKSLAHRQCLKQQ 106
            + + + D VL  ++ + TA  +W+ L  LY  KSL H + LK++
Sbjct: 668 NLHLAVADSVLSSIAEKKTAKEIWDTLIQLYEVKSL-HNRILKEE 799


>TC12416 similar to GB|AAH56066.1|33417132|BC056066 sop-prov protein
           {Xenopus laevis;} , partial (32%)
          Length = 416

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 15/40 (37%), Positives = 24/40 (59%)
 Frame = +3

Query: 194 DDSGEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDGNKTQY 233
           D  G G    RGR + RG+G+G+  R +   +GDG+K ++
Sbjct: 132 DGFGRGRGEGRGRGEGRGRGRGR-GRGRRGRRGDGDKKEW 248


>BP066094 
          Length = 532

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 20/60 (33%), Positives = 33/60 (54%), Gaps = 2/60 (3%)
 Frame = +1

Query: 901 TDGCEDRISTWRVGRNYLYATTRRFCRRQYKSMF--VEEIFVWVEAKSKAVVSSV**VPS 958
           +D C + +S W   R  L ++T RF R +    +  +EEI +W EA S+++V     +PS
Sbjct: 148 SDEC*ECLSKWLHLRGSLCSSTPRFXR*EEL*PYFQIEEISLWSEASSQSMV*ETQLIPS 327


>TC13414 homologue to UP|Q84TL5 (Q84TL5) At1g75760, partial (39%)
          Length = 544

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 1188 NLEGKSTISCSPFNNSSRVHSP 1209
            N +GK+ +SC  FNN S +H P
Sbjct: 117  NSKGKNVVSCEWFNNLSVLHDP 52


>TC19497 weakly similar to UP|Q8LA02 (Q8LA02) Contains similarity to
           RNA-binding protein from Arabidopsis thaliana gi|2129727
           and contains RNA recognition PF|00076 domain, partial
           (11%)
          Length = 436

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 11/31 (35%), Positives = 18/31 (57%)
 Frame = +2

Query: 198 EGLNVSRGRSQNRGKGKGKNSRSKSRSKGDG 228
           EG  + RGR + RG+G+G+  R +   +  G
Sbjct: 113 EGGGLGRGRGRGRGRGRGRGFRGRDGEERSG 205



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +2

Query: 197 GEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDGNKT 231
           G GL   RGR + RG+G+G   R      G    T
Sbjct: 116 GGGLGRGRGRGRGRGRGRGFRGRDGEERSGRSQDT 220


>TC17101 similar to UP|PIN4_MOUSE (Q9CWW6) Peptidyl-prolyl cis-trans
           isomerase NIMA-interacting 4  (Rotamase Pin4) (PPIase
           Pin4) , partial (50%)
          Length = 828

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +3

Query: 180 LRTKELTKFKELKVDDSGEGLNVSRGRSQNRGKGKGKNSRSKSRSKGDG 228
           LRT    K KE      G+G   + G  +N  KGKGK ++      GDG
Sbjct: 135 LRTMGKDKTKE--AGGKGKGKQAASGSDENASKGKGKGAKG-----GDG 260


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.360    0.161    0.601 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,648,889
Number of Sequences: 28460
Number of extensions: 322681
Number of successful extensions: 3126
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2213
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 2393
length of query: 1308
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1207
effective length of database: 2,023,140
effective search space: 2441929980
effective search space used: 2441929980
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.8 bits)
S2: 61 (28.1 bits)