TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126784.6 - phase: 0 
         (135 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV426475                                                               31  0.083
TC14521 similar to UP|O04894 (O04894) Transaldolase  , partial (...    27  1.2
AV423632                                                               27  1.2
BP048626                                                               26  2.0
TC9919                                                                 25  4.6
TC18455                                                                25  6.0
TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein...    24  7.8
TC20108                                                                24  7.8

>AV426475 
          Length = 300

 Score = 30.8 bits (68), Expect = 0.083
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 47  TGVVGEDGLPLQQSHFRGRLLEGTTLPLPH 76
           TG +G  GLP+   H    ++ GT++  PH
Sbjct: 182 TGAIGPTGLPVDTRHVSFNIISGTSMSCPH 271


>TC14521 similar to UP|O04894 (O04894) Transaldolase  , partial (86%)
          Length = 1695

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 87   NSVESSNSWETSVTFNDITYWNHDSVPSNNDDF 119
            +S  SS+SWE +   +  T+W    +PS +D F
Sbjct: 1260 DSTPSSSSWEPTKLQSTPTFWRALYIPSASDAF 1162


>AV423632 
          Length = 484

 Score = 26.9 bits (58), Expect = 1.2
 Identities = 13/41 (31%), Positives = 22/41 (52%)
 Frame = +2

Query: 88  SVESSNSWETSVTFNDITYWNHDSVPSNNDDFSRAFHWIPV 128
           S+ SS+S +     ND+T   H+++   +DD  R   W+ V
Sbjct: 245 SIPSSSSRDKFPKPNDLTSIAHNTLDRTDDDDGRGEQWVEV 367


>BP048626 
          Length = 357

 Score = 26.2 bits (56), Expect = 2.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 25 LLPCCIKHDGPTEVSQYFKPKP 46
          L+P C+KHD P++     K KP
Sbjct: 72 LVPRCLKHDHPSDTKTASKLKP 137


>TC9919 
          Length = 702

 Score = 25.0 bits (53), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (57%)
 Frame = +3

Query: 22 RVHLLPCCIKHDGPTEVSQYFKPK 45
          RVH  P C+K     ++S+  KP+
Sbjct: 42 RVHQKPICVKRSATDQISRSSKPE 113


>TC18455 
          Length = 565

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 13/34 (38%), Positives = 16/34 (46%)
 Frame = -3

Query: 68  EGTTLPLPHNYSGFVLGKKNSVESSNSWETSVTF 101
           E  T  L       V+GKK    S  SW +S+TF
Sbjct: 284 ETATYELHRTEQNQVVGKKRPP*SMKSWSSSLTF 183


>TC14095 homologue to UP|RS2_ARATH (P49688) 40S ribosomal protein S2,
           partial (88%)
          Length = 1134

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 23/72 (31%), Positives = 33/72 (44%), Gaps = 4/72 (5%)
 Frame = -2

Query: 25  LLPCCIKHDGP-TEVSQYFKPKPTGVVGEDGLPLQQSHFRGRLLE---GTTLPLPHNYSG 80
           L+P C+KHD P T   Q        ++ + GL    S   G LLE   G T  LP     
Sbjct: 938 LVPRCLKHDHPMTPKLQANSSLHPFLLKDKGLCCWLSQKIGILLEWRFGETSLLPEFRCQ 759

Query: 81  FVLGKKNSVESS 92
             +G + +++SS
Sbjct: 758 KTIGLQQTIKSS 723


>TC20108 
          Length = 368

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 112 VPSNNDDFSRAFHWIPV-AEAVSC 134
           VPSN +  S AFHW  + AEA +C
Sbjct: 109 VPSN*EVSSTAFHWFLL*AEA*NC 180


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.136    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,830,724
Number of Sequences: 28460
Number of extensions: 40630
Number of successful extensions: 163
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of query: 135
length of database: 4,897,600
effective HSP length: 81
effective length of query: 54
effective length of database: 2,592,340
effective search space: 139986360
effective search space used: 139986360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.9 bits)