BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126783.5 + phase: 0
(612 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP071583 281 3e-76
AV422643 267 3e-72
TC18954 similar to GB|CAA82315.1|435476|HSKERAT9 cytokeratin 9 {... 114 3e-30
TC18568 110 7e-25
AV426345 107 6e-24
TC10789 68 5e-12
TC19714 54 1e-07
TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm rep... 44 1e-04
AV420018 33 0.13
TC14582 33 0.17
TC13012 similar to PIR|T50004|T50004 RNA binding protein-like - ... 32 0.30
BP057633 32 0.39
AV417495 30 0.87
AV422095 29 1.9
TC13352 homologue to GB|AAO64817.1|29028876|BT005882 At3g04570 {... 28 3.3
TC9859 weakly similar to UP|Q8T4F9 (Q8T4F9) SD03848p, partial (3%) 28 3.3
BI418540 28 3.3
AV766757 28 5.6
TC17548 27 9.6
TC12869 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-co... 27 9.6
>BP071583
Length = 552
Score = 281 bits (718), Expect = 3e-76
Identities = 146/180 (81%), Positives = 163/180 (90%)
Frame = -1
Query: 46 ERLLQMLRTLVRFAATAPPPLYERPVRRVAAEAAKNLERALTLIRKCKRRSILHRVVTIV 105
+RLL MLRTLVR AA+ P LYERPVRRVAAE +KNLERALTL+RKC+RRSILHRVV+IV
Sbjct: 552 DRLLHMLRTLVRLAAS--PSLYERPVRRVAAETSKNLERALTLVRKCRRRSILHRVVSIV 379
Query: 106 TAADFRKVLVYLDASVGDMKWLLSILDVDGSGGGGGINLSLPPIASNDPILSWVWSFIAS 165
+A +FRKVL +L+ASVGDM+WLLSILD DG GGGGI +SLPPIASNDPI+SWVWSFIAS
Sbjct: 378 SATEFRKVLGHLEASVGDMRWLLSILDNDG--GGGGIVVSLPPIASNDPIMSWVWSFIAS 205
Query: 166 IQMGQLNDKIEATNELASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLC 225
+QMGQLND+I+A NELASLAQDNDRNKKIIVEEGGV PLLKL KEA+SP AQIAAAT LC
Sbjct: 204 LQMGQLNDRIDAANELASLAQDNDRNKKIIVEEGGVAPLLKLFKEATSPEAQIAAATTLC 25
>AV422643
Length = 469
Score = 267 bits (683), Expect = 3e-72
Identities = 139/156 (89%), Positives = 146/156 (93%)
Frame = +2
Query: 356 ENEDPAVKLQLKISCAEALWMLAAGSVSNSRKITETKGMLCLAKIVEKEQGELQRNCLMT 415
ENEDP VKLQL+ISCAEALWMLA GSVSNSRKITETKGMLCLAKI+EKEQGELQ NCLMT
Sbjct: 2 ENEDPQVKLQLRISCAEALWMLARGSVSNSRKITETKGMLCLAKIIEKEQGELQFNCLMT 181
Query: 416 IMEITAAAESNADLRRGAFKTNSPPAKAVVEQLLRILKEVDSPLMQIPAIKSIGSLARTF 475
IMEI AAAESNADLRR AFKTNSP AKAVVEQLLRI+KEVDSP +QIPAIKSIGSLARTF
Sbjct: 182 IMEIAAAAESNADLRRAAFKTNSPAAKAVVEQLLRIIKEVDSPSLQIPAIKSIGSLARTF 361
Query: 476 PARETRVIEPLVAQLSNRDINVADEAAVALTKFASP 511
PARETR+IEPLV +LSNRD +VADEA VALTKFASP
Sbjct: 362 PARETRMIEPLVMKLSNRDTDVADEADVALTKFASP 469
>TC18954 similar to GB|CAA82315.1|435476|HSKERAT9 cytokeratin 9 {Homo
sapiens;} , partial (3%)
Length = 734
Score = 114 bits (284), Expect(2) = 3e-30
Identities = 62/129 (48%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Frame = -3
Query: 35 KLECSEVWKHVERLLQMLRTLVRFAATAPPPLYERPVRRVAAEAAKNLERALTLIRKCKR 94
K C E+ V+ L + LR +VR A +A P L ERP+RR+AA+ +K L++ L+L+RKC++
Sbjct: 375 KPSCRELATKVQILCENLRAVVR-AVSANPSLNERPIRRMAADVSKCLDKTLSLVRKCRK 199
Query: 95 R-SILHRVVTIVTAADFRKVLVYLDASVGDMKWLLSILDVDGSGGGGGINLSLPPIASND 153
+ +L V ++ T D RKV L++S GDM WLLSI + G+ NLSLPPIASND
Sbjct: 198 QPGVLRHVWSMRTTGDLRKVWSLLESSNGDMMWLLSIFESKGT------NLSLPPIASND 37
Query: 154 PILSWVWSF 162
PIL+WVW++
Sbjct: 36 PILAWVWTY 10
Score = 35.4 bits (80), Expect(2) = 3e-30
Identities = 18/30 (60%), Positives = 21/30 (70%)
Frame = -2
Query: 6 EAKRLEEELSYPILVAERIRSATEETDSFK 35
E KRL+EEL PILVAER+ EE +S K
Sbjct: 463 EEKRLQEELLGPILVAERVIKLAEEAESSK 374
>TC18568
Length = 719
Score = 110 bits (275), Expect = 7e-25
Identities = 66/163 (40%), Positives = 91/163 (55%)
Frame = +3
Query: 298 VDEQTSIHSIFQVNKELGKKTTDRSGTGSGSRQFANSYSSTYYYTEGSSRGGNYRKEREN 357
V ++H+ N G +TT T S Q S +Y G K RE
Sbjct: 264 VTSTMAMHASSNKNSNQGNETTQ---TSQNSSQTPAKQSYSY--------SGINMKGREL 410
Query: 358 EDPAVKLQLKISCAEALWMLAAGSVSNSRKITETKGMLCLAKIVEKEQGELQRNCLMTIM 417
EDP VK ++K A ALW LA G+ S R ITE++ +LCLA ++EK +++ N M +M
Sbjct: 411 EDPEVKAKMKAMAARALWCLAKGNSSICRSITESRALLCLAILLEKGSRDVKYNSAMAVM 590
Query: 418 EITAAAESNADLRRGAFKTNSPPAKAVVEQLLRILKEVDSPLM 460
EIT AE + +LRR AFK NSP KAVV+Q+L+I+ E D+ L+
Sbjct: 591 EITEVAEKDPELRRSAFKPNSPACKAVVDQVLKIIDEEDTDLL 719
>AV426345
Length = 407
Score = 107 bits (267), Expect = 6e-24
Identities = 55/106 (51%), Positives = 71/106 (66%)
Frame = +1
Query: 346 SRGGNYRKERENEDPAVKLQLKISCAEALWMLAAGSVSNSRKITETKGMLCLAKIVEKEQ 405
S G K R+NEDP K +K A ALW LA G+V R ITE++ +LC A ++EK +
Sbjct: 88 SHSGINMKGRDNEDPETKASMKEMAARALWHLAKGNVPICRSITESRALLCFAVLLEKGE 267
Query: 406 GELQRNCLMTIMEITAAAESNADLRRGAFKTNSPPAKAVVEQLLRI 451
++Q N M +MEITA AE +ADLR+ AFK NSP KAVV+QLL+I
Sbjct: 268 EKVQYNSAMAVMEITAVAEKDADLRKSAFKPNSPACKAVVDQLLKI 405
>TC10789
Length = 584
Score = 67.8 bits (164), Expect = 5e-12
Identities = 41/114 (35%), Positives = 62/114 (53%)
Frame = +2
Query: 482 VIEPLVAQLSNRDINVADEAAVALTKFASPDNFLYVEHSKKIIEFDAVPAVMKLLRSNEV 541
+I PL+ L R+ + EA ++L KFA +N+L+++HSK II +++L+ E
Sbjct: 2 IIGPLLRLLDEREPELTREATISLMKFACTENYLHLDHSKAIITAGGAKHLVQLVYLGEH 181
Query: 542 NQMHHALTLLCYLALHAGSSESLEQARVLLALEGADRTILPQHIRDLVSKAIGH 595
AL LL Y+ALH SE L +A VL LE A + P +D +A+ H
Sbjct: 182 TVQVPALFLLSYIALHVADSEELARAEVLAVLEWASKR--PNMTQDETLEALLH 337
>TC19714
Length = 476
Score = 53.5 bits (127), Expect = 1e-07
Identities = 25/41 (60%), Positives = 32/41 (77%), Gaps = 1/41 (2%)
Frame = +1
Query: 573 LEGADRTILPQHIRDLVSKAIGHLNLYHAGSHSQPL-VYMP 612
LEGADRT +P H+R+LVS+ I HLNLYH G +SQ + Y+P
Sbjct: 1 LEGADRTAVPPHLRELVSRTIYHLNLYHTGMNSQRISSYLP 123
>TC8424 weakly similar to GB|BAC22265.1|24414015|AP003803 arm repeat
containing protein homolog-like {Oryza sativa (japonica
cultivar-group);} , partial (49%)
Length = 1586
Score = 43.5 bits (101), Expect = 1e-04
Identities = 24/67 (35%), Positives = 39/67 (57%)
Frame = +3
Query: 161 SFIASIQMGQLNDKIEATNELASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAA 220
+ + +I+ G + K A L L D+ RN+ ++V EGG+PPL+ L ++ +P A+ A
Sbjct: 861 ALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGLLVREGGIPPLVS-LSQSGTPRAKHKA 1037
Query: 221 ATCLCYL 227
T L YL
Sbjct: 1038ETLLRYL 1058
Score = 37.7 bits (86), Expect = 0.005
Identities = 25/85 (29%), Positives = 41/85 (47%)
Frame = +3
Query: 181 LASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLCYLANDLERIRVIVNE 240
L SLA D K IVEEGG+ L++ +++ S + A T L + + ++V E
Sbjct: 798 LNSLAAVQD-GKDAIVEEGGIAALVEAIEDGSVKGKEFAVLTLLQLCVDSVRNRGLLVRE 974
Query: 241 VGVPAVVQVLADSPIRVQTLAANLV 265
G+P +V + R + A L+
Sbjct: 975 GGIPPLVSLSQSGTPRAKHKAETLL 1049
>AV420018
Length = 213
Score = 33.1 bits (74), Expect = 0.13
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 193 KIIVEEGGVPPLLKLLKEASSPAAQIAAATCLCYLANDLERIRVIVNEVGVPAVV 247
+ IV GGVPPL++L + S + AAA C + + +R ++ E GV V+
Sbjct: 25 RAIVGHGGVPPLIELCQSGESVSQ--AAAACALKNISSVPEVRQVLAEEGVVKVM 183
>TC14582
Length = 1793
Score = 32.7 bits (73), Expect = 0.17
Identities = 15/47 (31%), Positives = 26/47 (54%)
Frame = +2
Query: 103 TIVTAADFRKVLVYLDASVGDMKWLLSILDVDGSGGGGGINLSLPPI 149
++ A +F + +L S +++ S+ +GSGGGG N + PPI
Sbjct: 29 SLARAHNFISAISFLKVSSSSSRFVTSLTVANGSGGGGHGNANFPPI 169
>TC13012 similar to PIR|T50004|T50004 RNA binding protein-like - Arabidopsis
thaliana {Arabidopsis thaliana;}, partial (84%)
Length = 625
Score = 32.0 bits (71), Expect = 0.30
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 7/147 (4%)
Frame = +3
Query: 406 GELQRNCLMTIMEITAAAESNADLRRGAFKTNSPPAKAVVEQLLRILKEVDSPLMQIPAI 465
GE++ + M+ + AAA D + K A A+ E ++ KE+ + +Q PA
Sbjct: 102 GEMEADVDMSAADDDAAAVKELDEMKRRLKEMEEEAAALREMQAKVEKEIGT--VQDPAA 275
Query: 466 KSIGSLAR-------TFPARETRVIEPLVAQLSNRDINVADEAAVALTKFASPDNFLYVE 518
+ + F P Q + + + KF P F YV
Sbjct: 276 AAASQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV- 452
Query: 519 HSKKIIEFDAVPAVMKLLRSNEVNQMH 545
EF AV + LR NE +++H
Sbjct: 453 ------EFVEAEAVQEALRLNE-SELH 512
>BP057633
Length = 570
Score = 31.6 bits (70), Expect = 0.39
Identities = 19/67 (28%), Positives = 33/67 (48%)
Frame = -2
Query: 166 IQMGQLNDKIEATNELASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLC 225
I+ G K A + L L + + ++++EG VPPL+ L ++ +P A+ A L
Sbjct: 416 IESGSQRGKENAASILLQLCLHSSKFCTLVLQEGAVPPLV-ALSQSGTPRAKEKAQQLLS 240
Query: 226 YLANDLE 232
+ N E
Sbjct: 239 HFRNQRE 219
>AV417495
Length = 316
Score = 30.4 bits (67), Expect = 0.87
Identities = 20/72 (27%), Positives = 33/72 (45%)
Frame = +3
Query: 159 VWSFIASIQMGQLNDKIEATNELASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQI 218
V + ++ L+ + EAT E+ LA+ N N+ I G + L++LLK + +
Sbjct: 60 VRGLVEGLRSSDLDTQREATVEIRFLAKHNMDNRIAIANCGAISLLVELLKSTDTRIQEN 239
Query: 219 AAATCLCYLAND 230
A L ND
Sbjct: 240 AVTALLNLSIND 275
>AV422095
Length = 462
Score = 29.3 bits (64), Expect = 1.9
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +1
Query: 179 NELASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLCYLANDLE 232
+ LA A D++R KI VE GGV LL +L A + A L L+ E
Sbjct: 295 SRLARFAADDERRMKI-VEMGGVQELLNVLSTAKDDRTRKEALNALAALSQSDE 453
>TC13352 homologue to GB|AAO64817.1|29028876|BT005882 At3g04570 {Arabidopsis
thaliana;}, partial (6%)
Length = 461
Score = 28.5 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 135 GSGGGGGINLSLPPIASNDPILS 157
GSGGGGG+N S P +S P +
Sbjct: 88 GSGGGGGVNNSFPDPSSGLPFFN 156
>TC9859 weakly similar to UP|Q8T4F9 (Q8T4F9) SD03848p, partial (3%)
Length = 472
Score = 28.5 bits (62), Expect = 3.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 135 GSGGGGGINLSLPPIASNDPILS 157
GSGGGGG+N S P +S P +
Sbjct: 47 GSGGGGGVNNSFPDPSSGLPFFN 115
>BI418540
Length = 518
Score = 28.5 bits (62), Expect = 3.3
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = -1
Query: 81 NLERALTLIRKCKRRSILHRVVTIVTAADFRKVLVYLDASVGDMKWLLSILDVDGSGGGG 140
+LE+ L LI +R +V+ + FR+ A GD G+GGGG
Sbjct: 452 SLEQILHLIPFLRRHVFTEQVLKLEGVVGFRQCGAAGVAEGGD-----------GAGGGG 306
Query: 141 GINLSLPPI 149
G + +PPI
Sbjct: 305 GAWIGVPPI 279
>AV766757
Length = 601
Score = 27.7 bits (60), Expect = 5.6
Identities = 23/81 (28%), Positives = 37/81 (45%)
Frame = +2
Query: 237 IVNEVGVPAVVQVLADSPIRVQTLAANLVARMAKHDPVAQEDFARENAIRPLVTLLSFDT 296
IV+ VP +V VL + + AA + ++ D + AI PLVTLLS T
Sbjct: 95 IVSSGAVPGIVHVLRKGSMEARENAAATLFSLSVVDE-NKVTIGSSGAIPPLVTLLSEGT 271
Query: 297 AVDEQTSIHSIFQVNKELGKK 317
++ + ++F + G K
Sbjct: 272 QRGKKDAATALFNLCIYQGNK 334
>TC17548
Length = 502
Score = 26.9 bits (58), Expect = 9.6
Identities = 18/49 (36%), Positives = 28/49 (56%)
Frame = +2
Query: 181 LASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLCYLAN 229
LA L +D+ ++I ++ G+ L+ LL +SS Q+ A LC LAN
Sbjct: 320 LAHLCSADDQ-RRIFIDNHGLELLIGLLGSSSSKQ-QLDGAVALCKLAN 460
>TC12869 weakly similar to UP|Q93XC9 (Q93XC9) Armadillo repeat-containing
protein (Fragment), partial (6%)
Length = 503
Score = 26.9 bits (58), Expect = 9.6
Identities = 24/101 (23%), Positives = 44/101 (42%)
Frame = +2
Query: 166 IQMGQLNDKIEATNELASLAQDNDRNKKIIVEEGGVPPLLKLLKEASSPAAQIAAATCLC 225
+ G N KI L+ + D+NK +V++G + PLL+LL +A L
Sbjct: 5 LSTGPENIKIVMAETLSEIPL-TDQNKLSLVKDGALQPLLQLLVNNDLEIKNVAVKALLQ 181
Query: 226 YLANDLERIRVIVNEVGVPAVVQVLADSPIRVQTLAANLVA 266
+ + ++ V P ++++L + TL +VA
Sbjct: 182 LSSLPENGLHMLKEGVAQP-LLELLYHHSFQSTTLLEQVVA 301
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.317 0.132 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,052,325
Number of Sequences: 28460
Number of extensions: 108504
Number of successful extensions: 700
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of query: 612
length of database: 4,897,600
effective HSP length: 96
effective length of query: 516
effective length of database: 2,165,440
effective search space: 1117367040
effective search space used: 1117367040
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Medicago: description of AC126783.5