BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.9 + phase: 1 /pseudo
(871 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AW720152 308 2e-84
TC9172 89 4e-18
TC16599 similar to UP|Q8W239 (Q8W239) GT-2 factor (Fragment), pa... 40 0.002
BP057299 40 0.002
TC16994 similar to UP|O22805 (O22805) At2g33550 protein, partial... 39 0.003
AU251968 35 0.067
TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like prot... 32 0.57
TC17121 31 0.97
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 30 1.7
BP078252 29 2.8
BP064838 29 2.8
BP073359 28 4.8
TC17807 weakly similar to UP|Q9FHE4 (Q9FHE4) Genomic DNA, chromo... 28 4.8
BP077099 28 4.8
TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1 (AT3g1... 28 4.8
TC8858 homologue to UP|Q84N37 (Q84N37) Potyvirus VPg interacting... 28 4.8
BG662093 28 6.3
TC16857 similar to PIR|T51729|T51729 arginine-tRNA-protein trans... 28 8.2
TC8939 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 28 8.2
>AW720152
Length = 503
Score = 308 bits (790), Expect = 2e-84
Identities = 152/166 (91%), Positives = 159/166 (95%)
Frame = +2
Query: 472 HAYRGELEEVLRIVKPQHFLPVHGEYLFLKEHESLGKSTGIRHTAVIKNGEMLGVSHLRN 531
HAYRGELEEVLRIVKPQHFLP+HGE LFLKEHE LGKSTGIRHTAVIKNGEMLGVSHLRN
Sbjct: 2 HAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTAVIKNGEMLGVSHLRN 181
Query: 532 RRVLSNGFISLGKENLQLKYSDGDKAFGTSGELFLDERMRIALDGIIVVSMEIFRPKNLE 591
RRVLSNGFISLGKENLQLKYSDGDKAFGTS ELFLDER+RIALDGIIV+SMEIFRPKNL+
Sbjct: 182 RRVLSNGFISLGKENLQLKYSDGDKAFGTSSELFLDERLRIALDGIIVISMEIFRPKNLD 361
Query: 592 SLAGNTLKGKIRITTRCLWLDKGKLLDALYKAAHAALSSCPVKSPL 637
+ A NTLKGKIRITTRCLWLDKGKL+DA+YKAA AALSSCPV SPL
Sbjct: 362 NFAENTLKGKIRITTRCLWLDKGKLIDAIYKAARAALSSCPVNSPL 499
>TC9172
Length = 605
Score = 88.6 bits (218), Expect = 4e-18
Identities = 41/45 (91%), Positives = 44/45 (97%)
Frame = +3
Query: 824 RDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSLALKYE 868
RDRF+VVKGRMALWEEISQ+LL+DGISRSPGQCKSLWTSL LKYE
Sbjct: 3 RDRFQVVKGRMALWEEISQNLLSDGISRSPGQCKSLWTSLVLKYE 137
>TC16599 similar to UP|Q8W239 (Q8W239) GT-2 factor (Fragment), partial (37%)
Length = 693
Score = 39.7 bits (91), Expect = 0.002
Identities = 27/97 (27%), Positives = 45/97 (45%), Gaps = 4/97 (4%)
Frame = +1
Query: 778 QDDSEDIDEAKSEEMSDSEPESSKSEK----KNKWKTEEVKKLIDLRSDLRDRFKVVKGR 833
QD + +E E E + +K ++W +E L+ +RSD+ F+ +
Sbjct: 100 QDGANGGEEKGREGSGGGELDEDGGDKIGSGGSRWPRQETLALLKIRSDMDAVFRDSSLK 279
Query: 834 MALWEEISQSLLADGISRSPGQCKSLWTSLALKYEVR 870
LWEE+S+ L G RS +CK + ++ KY R
Sbjct: 280 GPLWEEVSRKLAGLGYHRSAKKCKEKFENV-YKYHKR 387
>BP057299
Length = 551
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 793 SDSEPESSKSEKKNKWKTEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQSLLADGISRS 852
S + +S N+W +E L+ +RSD+ F+ + LW+E+S+ L G R+
Sbjct: 324 SGDDERGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLADLGYHRN 503
Query: 853 PGQCK 857
+CK
Sbjct: 504 AKKCK 518
>TC16994 similar to UP|O22805 (O22805) At2g33550 protein, partial (36%)
Length = 680
Score = 39.3 bits (90), Expect = 0.003
Identities = 33/115 (28%), Positives = 53/115 (45%), Gaps = 14/115 (12%)
Frame = +2
Query: 768 SRKEHKSNTKQDDSEDIDEAKSEEMSDSEPESSKSEKKN-----KWKTEEVKKLIDLRSD 822
S + K N D E ID A ++ S P ++ S+++ +W +E+ LI ++D
Sbjct: 137 SEQPSKPNITTVDGE-IDGA----VNGSPPFAAASDERPTARLPRWTRQEILVLIQGKAD 301
Query: 823 LRDRFKVVKGRMA---------LWEEISQSLLADGISRSPGQCKSLWTSLALKYE 868
RFK GR A W +S G++R P QC+ W++LA Y+
Sbjct: 302 AESRFK--PGRAAGSAFGSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYK 460
>AU251968
Length = 261
Score = 34.7 bits (78), Expect = 0.067
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 812 EVKKLIDLR-SDLRDRFKVVKGRMALWEEISQSLLADGISRSPGQCKSLWTSL 863
EV LI+LR + + K + LWE ISQ +L G RS +CK W ++
Sbjct: 63 EVWALINLRCTSNNNEDKEGNNKAPLWERISQGMLELGYKRSAKRCKEKWENI 221
>TC17487 UP|CAE45597 (CAE45597) SAR DNA-binding protein-like protein, complete
Length = 1794
Score = 31.6 bits (70), Expect = 0.57
Identities = 19/59 (32%), Positives = 26/59 (43%), Gaps = 3/59 (5%)
Frame = +1
Query: 757 EKSIKANNGYVSRKEHKSNTKQDDSEDIDEAKSEEMSDSEPESS---KSEKKNKWKTEE 812
EK + RKE N + + +D E K + +EPE S S+KK K K E
Sbjct: 1612 EKEVVKKEKKKKRKESTENVELQNGDDAGEKKKKRKKHAEPEESAEMPSKKKGKKKKSE 1788
>TC17121
Length = 641
Score = 30.8 bits (68), Expect = 0.97
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +2
Query: 426 TKEDIVLYSAKVIPGNESRVMEMMNRISEIGSTIVMGRNENLHTSGHAYRGELEEV 481
TKE+I S+K+ NESR E++ RI + + G L T YR EL E+
Sbjct: 80 TKENITPISSKIAELNESR-SELLGRIQGLKQDL-QGWRSKLDTQVKVYRDELSEL 241
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 30.0 bits (66), Expect = 1.7
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 779 DDSEDIDEAKSEEMSDSEPESSKSEKKNKWKTEEVKK 815
DD +D D+ EEM D++ +S +S+ + + VKK
Sbjct: 21 DDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKK 131
>BP078252
Length = 396
Score = 29.3 bits (64), Expect = 2.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 277 GKVFDREGLEELSKEGVTLMMSDSTNVLSP 306
GKV R G+E L +E + LMM + T V SP
Sbjct: 171 GKVRSRRGVECLCQENIDLMMHNCTYVHSP 82
>BP064838
Length = 341
Score = 29.3 bits (64), Expect = 2.8
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 183 ALPWVIPALDSNTPIFASSFTMELIKKRLKEHGIFLPSRLKIFRTKNKFVAGPF 236
+L W++ SN I SSF E + HGI + S F K +A F
Sbjct: 94 SLNWLVSCCSSNMVILFSSFNNERVNNLDSMHGILVGSGCPPFARKASHIAQMF 255
>BP073359
Length = 388
Score = 28.5 bits (62), Expect = 4.8
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 781 SEDIDEAKSEEMSDSEPESSKSEKKNKWKTEEVKKLIDLRSDL 823
S + + S +S S SS S W T +K+++ LRS L
Sbjct: 157 SSTVSSSSSSSVSSSSSSSSVSTSSG-WSTRPIKRIVPLRSSL 282
>TC17807 weakly similar to UP|Q9FHE4 (Q9FHE4) Genomic DNA, chromosome 5, TAC
clone:K17O22 (AT5g45100/K17O22_9), partial (26%)
Length = 844
Score = 28.5 bits (62), Expect = 4.8
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 804 KKNKWKTEEVKKLIDLRSDLRDRFKVVKGRMALWEEISQS 843
KK K K EEV+K+ L L++R K + W +++Q+
Sbjct: 251 KKLKEKDEEVQKMGKLNWVLQERVKSLSAENQFWRDLAQT 132
>BP077099
Length = 378
Score = 28.5 bits (62), Expect = 4.8
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 589 NLESLAGNTLKGKIRITTRC--LWLDKGKLLDALYKAAHAALSSCPVKSPLP 638
+L+ L+GN LK + TT C LW + + LDA Y A +C + LP
Sbjct: 86 DLKGLSGNLLK--L*HTTACN*LWKNFNERLDATYGGNLVAAEACTIYELLP 235
>TC9854 weakly similar to UP|Q9LSN7 (Q9LSN7) Gb|AAC24081.1
(AT3g17100/K14A17_22_), partial (43%)
Length = 1108
Score = 28.5 bits (62), Expect = 4.8
Identities = 14/70 (20%), Positives = 37/70 (52%)
Frame = +3
Query: 748 WKPFIASSVEKSIKANNGYVSRKEHKSNTKQDDSEDIDEAKSEEMSDSEPESSKSEKKNK 807
+ PF+ASS+ + + G SR H++ K+ ++ ++ S S+P +S+ + +
Sbjct: 297 FSPFMASSLISNSPSTGGDRSRDPHRTTMKRKKKSRLNHQNQQDQS-SQPAKWRSQAQQQ 473
Query: 808 WKTEEVKKLI 817
+ ++++ +
Sbjct: 474 LYSSKLRQAL 503
>TC8858 homologue to UP|Q84N37 (Q84N37) Potyvirus VPg interacting protein
(Fragment), partial (65%)
Length = 1272
Score = 28.5 bits (62), Expect = 4.8
Identities = 14/46 (30%), Positives = 23/46 (49%)
Frame = -2
Query: 190 ALDSNTPIFASSFTMELIKKRLKEHGIFLPSRLKIFRTKNKFVAGP 235
ALDSN P+F+ S +K G LP ++ + ++ + A P
Sbjct: 371 ALDSNFPLFSFSLRSSQFQKSFLPRGSLLP*KILLTKSSSLIKASP 234
>BG662093
Length = 387
Score = 28.1 bits (61), Expect = 6.3
Identities = 17/61 (27%), Positives = 27/61 (43%), Gaps = 11/61 (18%)
Frame = +3
Query: 758 KSIKANNGYVSRKEHKSNTKQDDS-----------EDIDEAKSEEMSDSEPESSKSEKKN 806
K K + S+ +HK + +D D D+ + SDSE ESS+ E+K
Sbjct: 180 KKEKQKKHHSSKSKHKKPSDSEDDTGDRRKGKTGERDFDKKYHKTQSDSEYESSEGERKR 359
Query: 807 K 807
+
Sbjct: 360 R 362
>TC16857 similar to PIR|T51729|T51729 arginine-tRNA-protein transferase 1
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (3%)
Length = 802
Score = 27.7 bits (60), Expect = 8.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 778 QDDSEDIDEAKSEEMSDSEPESSKSE 803
Q+D+ D+ + EEM +SE ESS E
Sbjct: 148 QEDANDVPMYEDEEMDESEVESSDDE 225
>TC8939 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (27%)
Length = 593
Score = 27.7 bits (60), Expect = 8.2
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +3
Query: 734 AEGDLSDSGESDEFWKPFIASSVEKSIKANNGYVS---RKEHKSNTKQDDSEDIDEAKSE 790
+E D SDS ESDE P A + + IKA V+ + + KS + ID K E
Sbjct: 384 SEDDFSDSDESDED-IPLNAENGKPVIKAEELKVTGSKKADAKSGASAKQVKVIDPKKDE 560
Query: 791 EMSDSEPESSK 801
E DS+ E +
Sbjct: 561 E-DDSDDEDDE 590
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.135 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,016,049
Number of Sequences: 28460
Number of extensions: 164337
Number of successful extensions: 958
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of query: 871
length of database: 4,897,600
effective HSP length: 98
effective length of query: 773
effective length of database: 2,108,520
effective search space: 1629885960
effective search space used: 1629885960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC126782.9