BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.8 + phase: 0 /pseudo
(250 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV421600 72 1e-13
TC18237 30 0.39
TC19013 29 0.67
AV408533 29 0.67
TC10124 28 1.9
TC14101 homologue to UP|Q39640 (Q39640) Glycolate oxidase , com... 27 2.5
BP047228 27 2.5
TC13896 similar to UP|Q9FFT6 (Q9FFT6) Translation initiation fac... 27 2.5
TC14643 similar to UP|Q9T0K7 (Q9T0K7) 3-hydroxyisobutyryl-coenzy... 27 4.3
TC9192 similar to UP|Q9AIT5 (Q9AIT5) IcmF-like protein (Fragment... 27 4.3
AV415951 26 7.4
TC10404 similar to UP|Q9LFU2 (Q9LFU2) Carboxylesterase-like prot... 26 7.4
BP039184 26 7.4
BP075277 26 7.4
AV767426 25 9.7
BP079310 25 9.7
BP071218 25 9.7
TC16871 25 9.7
TC17192 similar to UP|Q9LT32 (Q9LT32) Genomic DNA, chromosome 3,... 25 9.7
>AV421600
Length = 318
Score = 71.6 bits (174), Expect = 1e-13
Identities = 32/35 (91%), Positives = 35/35 (99%)
Frame = +2
Query: 146 SYLETLAISNFPYYEFVDRESMYKVGSLFYAIYFI 180
+YLET+AISNFPYY+FVDRESMYKVGSLFYAIYFI
Sbjct: 212 AYLETIAISNFPYYQFVDRESMYKVGSLFYAIYFI 316
Score = 32.3 bits (72), Expect = 0.079
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1
Query: 130 HSSGCILYLSFMENEQ 145
HSS CILYLS MENEQ
Sbjct: 1 HSSWCILYLSIMENEQ 48
>TC18237
Length = 482
Score = 30.0 bits (66), Expect = 0.39
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +1
Query: 236 CSPTGLPWFSTHANL 250
C GLPWFS HANL
Sbjct: 1 CPQVGLPWFSRHANL 45
>TC19013
Length = 378
Score = 29.3 bits (64), Expect = 0.67
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -3
Query: 19 ISSSSSASPTPSLWFAPNL 37
+S SSS SP P+LWF P+L
Sbjct: 370 LSFSSSFSPPPTLWFPPSL 314
>AV408533
Length = 416
Score = 29.3 bits (64), Expect = 0.67
Identities = 18/48 (37%), Positives = 25/48 (51%)
Frame = +1
Query: 11 LFCVSVLEISSSSSASPTPSLWFAPNLSKRWGELFFLLYTPFWLSLSL 58
LF L + SSSASP+P WF + W +L+ PF ++ SL
Sbjct: 124 LFTNHSLTST*SSSASPSPIRWFGFGFRRLW---IRVLHPPFLIASSL 258
>TC10124
Length = 805
Score = 27.7 bits (60), Expect = 1.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 116 LQLCWELFLDSLLFHSSGCILYLSFM 141
L LCW L+ ++ H GC+ YL+ +
Sbjct: 560 LCLCWLLYYIRIVHHFVGCLCYLALL 637
>TC14101 homologue to UP|Q39640 (Q39640) Glycolate oxidase , complete
Length = 1680
Score = 27.3 bits (59), Expect = 2.5
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 63 PYKLYENFTELEYLLLGLISAVPAFLIPMLFVGKADKGISWQDRYWVKSM 112
PY +NF E L LG + + G+ D+ +SWQD W++++
Sbjct: 825 PYLTLKNF---EGLNLGSMDKADDSGLASYVAGQIDRTLSWQDVKWLQTI 965
>BP047228
Length = 467
Score = 27.3 bits (59), Expect = 2.5
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = -2
Query: 120 WELFLDSLLFHSS-GCILYLSFMEN----EQSYLETLAISNFPYYEFVDRESMYKVGSLF 174
W + +LF GC+ + F+ + E+S++ L + + + R +Y + +
Sbjct: 238 WSFWFSLVLFLGYFGCL*AVFFLGSFACLERSFVGVLLL*ALWLFFLLARPFLYPLRRVV 59
Query: 175 YAIYFIVSFPMFLRIDEKP 193
Y YF++ + +F +KP
Sbjct: 58 YLAYFLILY*IFFNFQKKP 2
>TC13896 similar to UP|Q9FFT6 (Q9FFT6) Translation initiation factor-like
protein (AT5g54940/MBG8_21), complete
Length = 570
Score = 27.3 bits (59), Expect = 2.5
Identities = 13/21 (61%), Positives = 15/21 (70%)
Frame = +1
Query: 119 CWELFLDSLLFHSSGCILYLS 139
CW L LD LL+ SSG IL L+
Sbjct: 415 CWFLSLDFLLYDSSG*ILLLN 477
>TC14643 similar to UP|Q9T0K7 (Q9T0K7) 3-hydroxyisobutyryl-coenzyme A
hydrolase-like protein (AT4G13360/T9E8_100), complete
Length = 1568
Score = 26.6 bits (57), Expect = 4.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 145 QSYLETLAISNFPYYEFVDRESMYKVGSLFYAIYF 179
++Y+ L +SNF Y + RE + F +YF
Sbjct: 445 EAYIWLLVLSNFAYQRILSREDLLH*RCAFVLLYF 341
>TC9192 similar to UP|Q9AIT5 (Q9AIT5) IcmF-like protein (Fragment), partial
(5%)
Length = 1183
Score = 26.6 bits (57), Expect = 4.3
Identities = 21/74 (28%), Positives = 32/74 (42%), Gaps = 5/74 (6%)
Frame = +3
Query: 2 VSSILFSKSLF-CVSVLEISSSSSASPTPSLWFAPNLSKRWGELFFLLYTP----FWLSL 56
+SS F+ L C+ +++I+ A PS+ L F +Y FWL+
Sbjct: 294 ISSSCFNNPLLSCILLIDINMGHVAKIPPSICL----------LMFYIYKMISYIFWLNF 443
Query: 57 SLGIVVPYKLYENF 70
L I YK+ NF
Sbjct: 444 KLMIYYFYKILPNF 485
>AV415951
Length = 366
Score = 25.8 bits (55), Expect = 7.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 174 FYAIYFIVSFPMFLRIDEKPGDKWDLPR 201
F+ I+F + PMFL+ W LPR
Sbjct: 298 FFIIFFFIGIPMFLQ-----NSSWVLPR 230
>TC10404 similar to UP|Q9LFU2 (Q9LFU2) Carboxylesterase-like protein,
partial (29%)
Length = 665
Score = 25.8 bits (55), Expect = 7.4
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +3
Query: 64 YKLYENFTELEYLLLGLISAVPAFLIPM 91
YK++ ++ YL++ L+S +P ++P+
Sbjct: 240 YKIHSEVVKMIYLIMWLLSYMPMIMMPL 323
>BP039184
Length = 538
Score = 25.8 bits (55), Expect = 7.4
Identities = 21/68 (30%), Positives = 32/68 (46%), Gaps = 7/68 (10%)
Frame = -2
Query: 119 CWELFLDSLLFHSSGCILYLSF-MENEQSYLETLAISNFPYYEF------VDRESMYKVG 171
C EL LF I+++SF M+ Y+ ++ P F + RES++K
Sbjct: 195 CTELVAFPFLF-----IIFISFFMKCIMFYIPQCIVTRRPNVTF*LMFIMLVRESLFKSS 31
Query: 172 SLFYAIYF 179
SL+Y I F
Sbjct: 30 SLYYTIRF 7
>BP075277
Length = 444
Score = 25.8 bits (55), Expect = 7.4
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 227 IVPVSEAKQCSPTGLPWFSTHANL 250
IV V E ++C P +P+F +H+ +
Sbjct: 303 IVYVVEVRKCQPFTIPYFHSHSRM 374
>AV767426
Length = 337
Score = 25.4 bits (54), Expect = 9.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 24 SASPTPSLWFAPNLSKRWGELFFLLYT 50
S +P LWF +L + W L + Y+
Sbjct: 129 SRAPKNQLWFGFSLKRNWNTLLLVYYS 209
>BP079310
Length = 505
Score = 25.4 bits (54), Expect = 9.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -1
Query: 71 TELEYLLLGLISAVPAFLIPMLFVGKA 97
T + + +LGLI A F++ ++F+GK+
Sbjct: 499 TSISFSVLGLILAFLCFIMMIMFMGKS 419
>BP071218
Length = 407
Score = 25.4 bits (54), Expect = 9.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 46 FLLYTPFWLSLSLGIVVPYKLY 67
FL Y ++LSL LG++VP Y
Sbjct: 247 FL*YYSYYLSLVLGLIVPSSSY 312
>TC16871
Length = 598
Score = 25.4 bits (54), Expect = 9.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 88 LIPMLFVGKADKGISWQDRYWVKSMDNNLQLCWEL 122
LI ++ K K ISW+D W+K +Q+ E+
Sbjct: 424 LIHVMHNCKVHKLISWRDHNWLKMDARGMQVAAEI 320
>TC17192 similar to UP|Q9LT32 (Q9LT32) Genomic DNA, chromosome 3, P1 clone:
MOE17, partial (31%)
Length = 555
Score = 25.4 bits (54), Expect = 9.7
Identities = 10/22 (45%), Positives = 13/22 (58%)
Frame = -1
Query: 16 VLEISSSSSASPTPSLWFAPNL 37
V+E SPT ++WFAP L
Sbjct: 114 VIEREQGFVVSPTTTMWFAPKL 49
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.326 0.141 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,657,042
Number of Sequences: 28460
Number of extensions: 92791
Number of successful extensions: 816
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of query: 250
length of database: 4,897,600
effective HSP length: 88
effective length of query: 162
effective length of database: 2,393,120
effective search space: 387685440
effective search space used: 387685440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)
Medicago: description of AC126782.8