TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126782.6 - phase: 1 
         (422 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC15242 similar to UP|ASSY_ARATH (Q9SZX3) Argininosuccinate synt...   566  e-162
TC12099 similar to PIR|T06667|T06667 argininosuccinate synthase ...   155  2e-38
TC17934 similar to PIR|T06667|T06667 argininosuccinate synthase ...   100  8e-22
TC8880 similar to UP|ST35_ARATH (Q94LW6) Probable sulfate transp...    35  0.030
CB828155                                                               30  0.75
BP053360                                                               29  1.7
AV406876                                                               28  3.7
TC8324 UP|Q8VWY1 (Q8VWY1) Mitochondrial phosphate transporter, c...    27  4.9
TC7840 similar to UP|AAQ72788 (AAQ72788) Hypersensitive-induced ...    27  6.3
TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%)                 27  6.3

>TC15242 similar to UP|ASSY_ARATH (Q9SZX3) Argininosuccinate synthase,
           chloroplast precursor  (Citrulline--aspartate ligase) ,
           partial (57%)
          Length = 1296

 Score =  566 bits (1460), Expect = e-162
 Identities = 272/316 (86%), Positives = 302/316 (95%), Gaps = 2/316 (0%)
 Frame = +2

Query: 1   IKAVLYKD--VEISETKKVAGLKGKLNKVVLAYSGGLDTSVVVPWLRENYGCDVVCFTAD 58
           IKAVL  D  VEISETKK +GL+GKLNKVVLAYSGGLDTSV+VPWLRENYGC+VVCFTAD
Sbjct: 347 IKAVLRNDTDVEISETKKGSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTAD 526

Query: 59  LGQGASELEGLEEKAKASGASQLVVKDLKEEFVRDYVFPCLRAGAIYERKYLLGTAIARP 118
           +GQG  ELEGLEEKAKASGASQLVVKDL+EEFV+DY+FPCLRAGA YERKYLLGTA+ARP
Sbjct: 527 VGQGLKELEGLEEKAKASGASQLVVKDLQEEFVKDYIFPCLRAGATYERKYLLGTAMARP 706

Query: 119 VIAKAMVDIANEVGADAVSHGCTGKGNDQVRFELSFFALNPKLNVVAPWREWDITGREDA 178
           VIAKAMVD+A EVGADAVSHGCTGKGNDQVRFEL+FFALNPKLNVVAPWREWDITGREDA
Sbjct: 707 VIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDITGREDA 886

Query: 179 IEYAKKHDVPVPVTKKSIYSRDRNLWHITHEGDVLEDPANEPKKDMYMLTVDPEDAPNEP 238
           IEYAKKH++PVPVTKKSIYSRDRNLWH++HEGD+LEDPANEP+KDMYM++VDPEDAP++P
Sbjct: 887 IEYAKKHNIPVPVTKKSIYSRDRNLWHLSHEGDILEDPANEPQKDMYMMSVDPEDAPDKP 1066

Query: 239 EYVEIGFELGIPVSLNGKRLSPGNLVAELNEIGGRHGIGRVDLVEDRIVGMKSRGVYETP 298
           EYVEIG E G+PVS+NGKRLSP +L+AELNEIGGRHGIGR+D+VE+R+VGMKSRGVYETP
Sbjct: 1067EYVEIGIEAGLPVSVNGKRLSPASLLAELNEIGGRHGIGRIDMVENRLVGMKSRGVYETP 1246

Query: 299 GGTILFTAARDLETLT 314
           GGTILF AAR+LE LT
Sbjct: 1247GGTILFAAARELELLT 1294


>TC12099 similar to PIR|T06667|T06667 argininosuccinate synthase  -
           Arabidopsis                thaliana {Arabidopsis
           thaliana;} , partial (16%)
          Length = 477

 Score =  155 bits (391), Expect = 2e-38
 Identities = 71/84 (84%), Positives = 83/84 (98%)
 Frame = +3

Query: 339 WFDPLRESMDSFMEKISQTTTGSVSLKLYKGSASVTGRKSPYSLYREDISSFESGEIYNH 398
           WFDPLRES+D+FM KI++TTTGSV+LKLYKGSA+VTGRKSPYSLYREDISSF++G++YNH
Sbjct: 3   WFDPLRESLDAFMHKITETTTGSVTLKLYKGSAAVTGRKSPYSLYREDISSFDTGDLYNH 182

Query: 399 ADAVGFIKLYGLPMRIRAMMEQGI 422
           ADAVGFIKLYGLPMRIRAMM+QG+
Sbjct: 183 ADAVGFIKLYGLPMRIRAMMQQGL 254


>TC17934 similar to PIR|T06667|T06667 argininosuccinate synthase  -
           Arabidopsis                thaliana {Arabidopsis
           thaliana;} , partial (11%)
          Length = 564

 Score = 99.8 bits (247), Expect = 8e-22
 Identities = 46/59 (77%), Positives = 54/59 (90%)
 Frame = +2

Query: 364 LKLYKGSASVTGRKSPYSLYREDISSFESGEIYNHADAVGFIKLYGLPMRIRAMMEQGI 422
           LKL+KGS  VT R+SP+SLYR+DISSFESGEIY+ ADA GFI+LYGLPMR+RAM+EQGI
Sbjct: 2   LKLFKGSVGVTSRQSPFSLYRQDISSFESGEIYDQADAAGFIRLYGLPMRVRAMLEQGI 178


>TC8880 similar to UP|ST35_ARATH (Q94LW6) Probable sulfate transporter 3.5,
           partial (30%)
          Length = 794

 Score = 34.7 bits (78), Expect = 0.030
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 203 LWHITHEGDVLEDPANEPKKDMYMLTVDPEDAPNEPEYVEIGFELGIPVSL 253
           +W    +GDV+ DP N P + + +L   PE    E   ++ GFE  +  SL
Sbjct: 296 IWEPLEDGDVVLDPFNNPPRPVLLLLDLPERIIREERLLQPGFEFCVKPSL 144


>CB828155 
          Length = 542

 Score = 30.0 bits (66), Expect = 0.75
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +3

Query: 1   IKAVLYKDVEISETKKVAGLKGK 23
           IKAVL +D++I ETK V GL+GK
Sbjct: 477 IKAVL-QDIQIPETKNVTGLRGK 542


>BP053360 
          Length = 530

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 16/70 (22%), Positives = 29/70 (40%)
 Frame = +3

Query: 85  DLKEEFVRDYVFPCLRAGAIYERKYLLGTAIARPVIAKAMVDIANEVGADAVSHGCTGKG 144
           D  E+ +RD   P      +++ K  LG ++    +A A         + + S  CT +G
Sbjct: 111 DDHEDVLRDDSLPVCSTDRVHDVK--LGDSVEESTVASATRSSQTNAASGSSSKACTARG 284

Query: 145 NDQVRFELSF 154
           +D   F   +
Sbjct: 285 SDSADFRSGY 314


>AV406876 
          Length = 234

 Score = 27.7 bits (60), Expect = 3.7
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +3

Query: 118 PVIAKAMVDIANEVGADAVSHGCTGKGNDQVRFELSFFALNPKLNVVAPW 167
           P +A    D+   VG D  S GC G G D VRF +   A   K++    W
Sbjct: 27  PGVAVNFGDLKGFVGGD--SDGCGGSGEDAVRFVVGELAKLLKVHCDRFW 170


>TC8324 UP|Q8VWY1 (Q8VWY1) Mitochondrial phosphate transporter, complete
          Length = 1605

 Score = 27.3 bits (59), Expect = 4.9
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 363 SLKLYKGSASVTGRKSPYSLYREDISSFES--GEIYNHA 399
           +L LYKG   + GR+ PY++ +   +SFE+    IY HA
Sbjct: 771 TLGLYKGLVPLWGRQIPYTMMK--FASFETIVEMIYKHA 881


>TC7840 similar to UP|AAQ72788 (AAQ72788) Hypersensitive-induced response
            protein, complete
          Length = 1585

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 13/32 (40%), Positives = 18/32 (55%)
 Frame = -3

Query: 26   KVVLAYSGGLDTSVVVPWLRENYGCDVVCFTA 57
            K+V+     L  SV  PW R +  C+V+ FTA
Sbjct: 1133 KLVVVSYVSL*DSVAFPWRRPSLICEVISFTA 1038


>TC12851 UP|Q84TG9 (Q84TG9) Beta-tubulin, partial (34%)
          Length = 591

 Score = 26.9 bits (58), Expect = 6.3
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
 Frame = +3

Query: 123 AMVDIANEVGAD--------AVSHGCTGKGNDQVRFELSFFALNPKLNVVAPWREWDITG 174
           A+ DI   VG+         A  H  TG+G D++ F  +   +N  ++ +  +    + G
Sbjct: 216 AIQDIFKRVGSHFSAMFKRKAFLHWYTGEGMDEMEFTEAESNMNDLVSELQQYEAASVEG 395

Query: 175 REDAIEYAK 183
            E+  EYA+
Sbjct: 396 EEEEDEYAE 422


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,966,266
Number of Sequences: 28460
Number of extensions: 69208
Number of successful extensions: 290
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of query: 422
length of database: 4,897,600
effective HSP length: 93
effective length of query: 329
effective length of database: 2,250,820
effective search space: 740519780
effective search space used: 740519780
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)