BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126782.17 - phase: 0 /pseudo
(346 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV420464 34 0.041
TC14304 similar to UP|Q94FU3 (Q94FU3) Ubiquitin conjugating enzy... 30 0.78
TC10210 29 1.3
TC19329 similar to PIR|T52134|T52134 Zwille protein [imported] -... 29 1.3
TC7807 homologue to UP|Q946J9 (Q946J9) Aquaporin protein PIP1,1,... 28 3.0
AV424640 27 3.9
TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%) 27 3.9
BP032005 27 3.9
TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,... 27 5.0
TC13745 similar to UP|COQ3_ARATH (O49354) Hexaprenyldihydroxyben... 27 6.6
CN825745 27 6.6
BP050923 26 8.6
TC10052 26 8.6
TC9493 homologue to UP|Q940S0 (Q940S0) T5E21.14/T5E21.14 (At1g14... 26 8.6
BP060250 26 8.6
BP035672 26 8.6
>AV420464
Length = 228
Score = 33.9 bits (76), Expect = 0.041
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 23 VSSKESIEFILQALWRTRKTGLQSDDRCIIQDML 56
+ S+++++ IL LW TRKTGL+ ++ Q +L
Sbjct: 126 IESEQTLDHILNTLWTTRKTGLRPPEKSRFQSLL 227
>TC14304 similar to UP|Q94FU3 (Q94FU3) Ubiquitin conjugating enzyme 2
(Ubiquitin-conjugating enzyme E2) (Ubiquitin-protein
ligase) (Ubiquitin carrier protein) , partial (83%)
Length = 1428
Score = 29.6 bits (65), Expect = 0.78
Identities = 20/60 (33%), Positives = 30/60 (49%), Gaps = 4/60 (6%)
Frame = +3
Query: 183 LCYRNSLYKCLPYDSVYTMN----CTLSCLSTCAKSSFFSKVHLHL*TLHCLVSHLNILF 238
L R+S+ + LP+ S+ M C+ S + S F SK+HL CL+S + LF
Sbjct: 690 LLLRSSVSQNLPFLSIVRMQHSGKCSPSMWRSTTSSCFLSKLHLSRCHQKCLMSKVQDLF 869
>TC10210
Length = 765
Score = 28.9 bits (63), Expect = 1.3
Identities = 12/40 (30%), Positives = 25/40 (62%)
Frame = +2
Query: 17 LPVLLNVSSKESIEFILQALWRTRKTGLQSDDRCIIQDML 56
LP+ +S+ +S + ++ LW+T++ S+ CI++ ML
Sbjct: 89 LPLHFGISNLQSAKVLILLLWQTQRAHPVSEI*CILESML 208
>TC19329 similar to PIR|T52134|T52134 Zwille protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(7%)
Length = 623
Score = 28.9 bits (63), Expect = 1.3
Identities = 11/29 (37%), Positives = 15/29 (50%)
Frame = -3
Query: 2 LVIVFASMEQTLWGHLPVLLNVSSKESIE 30
L + F +M TLW H P L V + +E
Sbjct: 201 LFVTFGTMSSTLWSHSPAALPVPHRNELE 115
>TC7807 homologue to UP|Q946J9 (Q946J9) Aquaporin protein PIP1,1, partial
(27%)
Length = 1289
Score = 27.7 bits (60), Expect = 3.0
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 179 LYFILCYRNSLYKCLPYDSVYTMNCTLSCLSTCAKSSFFSKVHLHL*TLHCLVSHLNI 236
L+ I+ R L L +D V ++ L+ S F HLH+ +L C V N+
Sbjct: 1047 LWLIMWCRRRLLSLLAFDKV------IASLAIVTVQSLFLLYHLHVLSLQCFVVMCNV 1202
>AV424640
Length = 342
Score = 27.3 bits (59), Expect = 3.9
Identities = 18/42 (42%), Positives = 24/42 (56%)
Frame = +1
Query: 274 VVVVVLLR*DYRCNSIYSFWFASEC*SGGVFMKIPARMIIQS 315
VV+V LLR SI S WF S +G VFM++ R+ + S
Sbjct: 22 VVLVTLLR---IITSIGSVWFPSIVVTGMVFMRLIPRLCLMS 138
>TC17355 similar to UP|Q9FF77 (Q9FF77) Pectinesterase, partial (34%)
Length = 848
Score = 27.3 bits (59), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -3
Query: 312 IIQSCFPVKFCLNC---KSY*HFCCRSFSNSGK 341
++ C+ + FC C + Y H CC+SFS + K
Sbjct: 501 VVPHCYCLVFCRTCCVSECYIH-CCKSFSRNSK 406
>BP032005
Length = 449
Score = 27.3 bits (59), Expect = 3.9
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +2
Query: 148 YDMFISCFQLIFISSLR*LM 167
YD+ I CF+LIF S L *LM
Sbjct: 77 YDLPIRCFELIFTSRLD*LM 136
>TC8093 homologue to UP|EFTU_TOBAC (P41342) Elongation factor Tu,
chloroplast precursor (EF-Tu), partial (58%)
Length = 1146
Score = 26.9 bits (58), Expect = 5.0
Identities = 25/89 (28%), Positives = 41/89 (45%)
Frame = +2
Query: 234 LNILFISYYLINTYILFLIS*WLVLIFHE*DL*SLQLFNVVVVVVLLR*DYRCNSIYSFW 293
LN F S+Y + + + + +LVL F L* L + VV + R S++ W
Sbjct: 767 LNWRFGSFYRLTSSLGMMFPLFLVLPFWLLKL*WRTLLSNVVRISGW---IRFMSLWIMW 937
Query: 294 FASEC*SGGVFMKIPARMIIQSCFPVKFC 322
A+ F+ + A+ I + C P+K C
Sbjct: 938 IAT-------FLSLSAKPIFRFCVPLKMC 1003
>TC13745 similar to UP|COQ3_ARATH (O49354) Hexaprenyldihydroxybenzoate
methyltransferase, mitochondrial precursor
(Dihydroxyhexaprenylbenzoate methyltransferase)
(3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
(DHHB methyltransferase) (DHHB-MT) (DHHB-MTas , partial
(6%)
Length = 687
Score = 26.6 bits (57), Expect = 6.6
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 13/82 (15%)
Frame = +3
Query: 148 YDMFISCFQLIFISSLR*LM*TTYSSYKKL*LY--------FILC-----YRNSLYKCLP 194
+D+ I CF+LIFI+ L *+M +Y L Y FI+ R + CL
Sbjct: 336 HDILICCFELIFINYLD*VMNQFLLTYNLLSSYD*ALM**AFIISASPQDTRTLVSFCLF 515
Query: 195 YDSVYTMNCTLSCLSTCAKSSF 216
+ + YT CL TC F
Sbjct: 516 FWNNYT------CLFTCFNRPF 563
>CN825745
Length = 664
Score = 26.6 bits (57), Expect = 6.6
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 19 VLLNVSSKESIEFILQALWRTRKTGLQSDDRCII 52
+LLN+SS I IL ++WRT +Q+ ++C+I
Sbjct: 341 LLLNMSS---ITLILISMWRTYP*DVQACEQCVI 433
>BP050923
Length = 519
Score = 26.2 bits (56), Expect = 8.6
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 199 YTMN-CTLSCLSTCAKSSFFSKVHLHL*TLHCL-VSHLNILFISYYLINTYILFLIS 253
YT N C L TC ++ FSK+H L +CL V H + +I +IL ++S
Sbjct: 161 YTKNDCLCHSLYTCTMTTSFSKLHKVL-VYNCLRVLH------DFEMIENFILIILS 12
>TC10052
Length = 554
Score = 26.2 bits (56), Expect = 8.6
Identities = 9/17 (52%), Positives = 14/17 (81%)
Frame = +3
Query: 233 HLNILFISYYLINTYIL 249
HLN++F+ YY I++ IL
Sbjct: 138 HLNLIFLCYYFISSVIL 188
>TC9493 homologue to UP|Q940S0 (Q940S0) T5E21.14/T5E21.14
(At1g14670/T5E21.14), partial (19%)
Length = 680
Score = 26.2 bits (56), Expect = 8.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = +3
Query: 81 AKCSSPCSLLNQFHGKPIS----FSLMLCLIRE 109
++ SSP LL+ FH + F+++LC +RE
Sbjct: 363 SQVSSPLELLSSFHRHSVENYSYFAVLLCTLRE 461
>BP060250
Length = 487
Score = 26.2 bits (56), Expect = 8.6
Identities = 11/23 (47%), Positives = 15/23 (64%)
Frame = +2
Query: 215 SFFSKVHLHL*TLHCLVSHLNIL 237
S+ +K+HL T HCL+ LN L
Sbjct: 269 SWHTKIHLPFCTFHCLLMQLNQL 337
>BP035672
Length = 485
Score = 26.2 bits (56), Expect = 8.6
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = -1
Query: 227 LHCLVSHLNILFISYYLINTYILFLIS*WLVLIFHE*DL*SLQLFNVVVVVVLLR*DYRC 286
L C S N+L + + ++ +S +L+L F VVVVVL+ YRC
Sbjct: 362 LCCN*ST*NVLRKFLFFFSFFLFMHVSKFLILFF----------LCYVVVVVLIIAAYRC 213
Query: 287 NSIYSFW 293
+ +W
Sbjct: 212 RILLGYW 192
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.357 0.157 0.562
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,766,577
Number of Sequences: 28460
Number of extensions: 133404
Number of successful extensions: 1854
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1853
length of query: 346
length of database: 4,897,600
effective HSP length: 91
effective length of query: 255
effective length of database: 2,307,740
effective search space: 588473700
effective search space used: 588473700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 56 (26.2 bits)
Medicago: description of AC126782.17