TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126781.3 + phase: 0 
         (77 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC17728 similar to UP|Q9M011 (Q9M011) Light-inducible protein AT...    96  2e-21
AV423118                                                               26  1.6
TC14779 similar to UP|O65833 (O65833) TCTR2 protein, partial (6%)      25  2.0
BP052610                                                               25  2.6
TC8450 similar to UP|PDA1_VIGUN (O04865) Phospholipase D alpha 1...    24  4.5
BF177549                                                               24  4.5
AV409227                                                               24  4.5
TC14580 weakly similar to UP|RK21_SPIOL (P24613) 50S ribosomal p...    24  5.9
BP048284                                                               23  7.7
TC14664 weakly similar to AAR24650 (AAR24650) At5g63160, partial...    23  7.7

>TC17728 similar to UP|Q9M011 (Q9M011) Light-inducible protein ATLS1,
           complete
          Length = 640

 Score = 95.5 bits (236), Expect = 2e-21
 Identities = 44/75 (58%), Positives = 59/75 (78%)
 Frame = +2

Query: 3   ILVNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
           I++ G V ++FGGTE+PAAYGEL+SIGGL+P VN KLS+ IA I++T L +  SRF++KF
Sbjct: 176 IVLKGSVPVSFGGTEQPAAYGELVSIGGLNPDVNKKLSAAIASILETKLSVPKSRFFLKF 355

Query: 63  SDVQPSFVGFNGSTF 77
            D + S  G+NGSTF
Sbjct: 356 YDTKGSNFGWNGSTF 400


>AV423118 
          Length = 472

 Score = 25.8 bits (55), Expect = 1.6
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 13/74 (17%)
 Frame = +2

Query: 2   CILVNGGVAIAF--GGTEEPAAYG-----------ELISIGGLDPTVNAKLSSTIAQIIQ 48
           C++  G  AIA   G  E   AYG           +L +  G      + +S  I+ ++ 
Sbjct: 143 CVIATGYDAIALKSGWDEYGIAYGRPTENVHIRRVDLQASSGSALAFGSDMSGGISNVLV 322

Query: 49  TNLHIHSSRFYIKF 62
            N H+H+S   I+F
Sbjct: 323 ENAHLHNSNGGIEF 364


>TC14779 similar to UP|O65833 (O65833) TCTR2 protein, partial (6%)
          Length = 572

 Score = 25.4 bits (54), Expect = 2.0
 Identities = 11/19 (57%), Positives = 14/19 (72%)
 Frame = +3

Query: 9  VAIAFGGTEEPAAYGELIS 27
          V  A+GG+E PAA+G  IS
Sbjct: 72 VCTAYGGSEAPAAFGYPIS 128


>BP052610 
          Length = 404

 Score = 25.0 bits (53), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 26  ISIGGLDPTVNAKLSSTIAQIIQTNLHIH 54
           I IGG DPT +  L+ + +Q+ Q   H H
Sbjct: 164 IKIGG-DPTFSFVLAFSFSQVHQAGFHFH 247


>TC8450 similar to UP|PDA1_VIGUN (O04865) Phospholipase D alpha 1  (PLD
           alpha 1) (Choline phosphatase 1)
           (Phosphatidylcholine-hydrolyzing phospholipase D 1) ,
           partial (73%)
          Length = 2062

 Score = 24.3 bits (51), Expect = 4.5
 Identities = 19/75 (25%), Positives = 30/75 (39%), Gaps = 8/75 (10%)
 Frame = +2

Query: 5   VNGGVAIAFGGTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQ--------TNLHIHSS 56
           ++GG A  F  + E AA   LIS  G D  ++  +       I+         N +   S
Sbjct: 761 IDGGAAFGFPESPEDAARAGLIS--GKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGS 934

Query: 57  RFYIKFSDVQPSFVG 71
            F     D++P  +G
Sbjct: 935 SFAWSAEDIKPEDIG 979


>BF177549 
          Length = 440

 Score = 24.3 bits (51), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (75%)
 Frame = +2

Query: 49  TNLHIHSSRFYIKFSDV 65
           +++HIHS  FYIK + V
Sbjct: 296 SSIHIHSPLFYIKMTTV 346


>AV409227 
          Length = 427

 Score = 24.3 bits (51), Expect = 4.5
 Identities = 11/28 (39%), Positives = 16/28 (56%)
 Frame = +1

Query: 14  GGTEEPAAYGELISIGGLDPTVNAKLSS 41
           GG++ P  YG + S  G  P+V +  SS
Sbjct: 184 GGSDPPPGYGNVGSFKGASPSVPSWSSS 267


>TC14580 weakly similar to UP|RK21_SPIOL (P24613) 50S ribosomal protein L21,
           chloroplast precursor (CL21) (CS-L7), partial (42%)
          Length = 938

 Score = 23.9 bits (50), Expect = 5.9
 Identities = 10/19 (52%), Positives = 13/19 (67%)
 Frame = +2

Query: 36  NAKLSSTIAQIIQTNLHIH 54
           N    STIA+++ TN HIH
Sbjct: 548 NINERSTIAELMGTNSHIH 604


>BP048284 
          Length = 168

 Score = 23.5 bits (49), Expect = 7.7
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 15  GTEEPAAYGELISIGGLDPTVNAKLSSTIAQIIQTNLHIHSSRFYIKF 62
           G ++   +  L S+ GLD            +++  +LH HS+  Y+KF
Sbjct: 146 GFDQVGLFIFLFSLDGLD------------KVVYMSLHDHSTYLYLKF 39


>TC14664 weakly similar to AAR24650 (AAR24650) At5g63160, partial (24%)
          Length = 589

 Score = 23.5 bits (49), Expect = 7.7
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -3

Query: 24 ELISIGGLDPTVNAKLSS 41
          ELIS GG DPT   +L S
Sbjct: 56 ELISAGGCDPTRKVQLLS 3


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.321    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,125,996
Number of Sequences: 28460
Number of extensions: 10499
Number of successful extensions: 61
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of query: 77
length of database: 4,897,600
effective HSP length: 53
effective length of query: 24
effective length of database: 3,389,220
effective search space: 81341280
effective search space used: 81341280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)