BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126019.10 + phase: 0
(435 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14232 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferase... 426 0.0
TC11551 homologue to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiol... 305 1e-83
TC17381 similar to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolas... 281 1e-76
TC13543 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase ... 67 4e-15
TC14456 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase ... 73 8e-14
TC18226 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfer... 65 3e-11
AI967848 65 3e-11
TC15691 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransfer... 59 2e-09
AU251442 30 1.0
TC19351 similar to UP|H2A_CICAR (O65759) Histone H2A, partial (98%) 29 1.3
AV768738 29 1.3
TC12676 27 5.1
BP037373 27 5.1
AV422170 27 6.6
TC14582 27 6.6
TC16882 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial ... 27 8.6
>TC14232 similar to UP|Q08375 (Q08375) Acetyl-CoA acyltransferase , partial
(96%)
Length = 1703
Score = 426 bits (1095), Expect(2) = 0.0
Identities = 222/300 (74%), Positives = 249/300 (83%), Gaps = 12/300 (4%)
Frame = +1
Query: 1 MEKAVERQRVLLQHLNPNSVT------SSHHSTHLSASLCSAGQTG------GSENDVVI 48
MEKA+ RQ VLLQHLNP+SV+ S T L AS C+AG + G +DVVI
Sbjct: 55 MEKAINRQNVLLQHLNPSSVSIYSTNPDSSSPTSLYASACAAGDSAAYLRPSGFGDDVVI 234
Query: 49 VAAYRTAICKAKRGGFKDTLPDDLLASVLKAVIEKTNVEPSEVGDIVVGTVLGPGSERAI 108
VAAYRTA+CKAKRGGFKDT DDLLA VLKAV+EKTNV PSEVGDI+VG+VL PGS+RA
Sbjct: 235 VAAYRTALCKAKRGGFKDTHADDLLAPVLKAVVEKTNVNPSEVGDIIVGSVLAPGSQRAS 414
Query: 109 ECRMAAFYAGFPDTVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQDTIS 168
ECRMAAFYAGFP+TVP+RTVNRQCSSGLQAVADVAA IKAGFYDIGIGAGLE MT + +
Sbjct: 415 ECRMAAFYAGFPETVPIRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTSNPMG 594
Query: 169 GVRKTNPKVEIFAQARDCLLSMGITSENVAQRYGVTRQEQDQAAVESHRRAAAATASGKF 228
NPKV+ F QA++CLL MGITSENVA R+GV+R+EQDQAAVESHRRAAAATA+GKF
Sbjct: 595 WEGSVNPKVKEFEQAQNCLLPMGITSENVAHRFGVSRKEQDQAAVESHRRAAAATAAGKF 774
Query: 229 KDEIIPVSTKFVDPKTGEEKQIIVSVDDGIRPNANLVDLAKLKPAFKKDGTTTAGNASQV 288
KDEIIPV+TK VDPKTGEEK + +SVDDGIRPNA + DLAKLKP FKKDGTTTAGN+SQV
Sbjct: 775 KDEIIPVTTKIVDPKTGEEKSVTISVDDGIRPNATVSDLAKLKPVFKKDGTTTAGNSSQV 954
Score = 239 bits (609), Expect(2) = 0.0
Identities = 118/138 (85%), Positives = 129/138 (92%)
Frame = +3
Query: 297 LMKRSVAVQKGLPILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSNIDLYEINE 356
LMKRSVA+QKGLPILG+FR+F+AVGVDPAVMGVGPA AIP AVK+AGLEL +IDL+EINE
Sbjct: 981 LMKRSVAMQKGLPILGVFRTFAAVGVDPAVMGVGPAAAIPVAVKAAGLELDDIDLFEINE 1160
Query: 357 AFASQFVYSCKKLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKDCRFGVI 416
AFASQFVY KLGLD K+NVNGGAMA GHPLGATGARCVATLL+EMKRRG+DCRFGVI
Sbjct: 1161 AFASQFVYCRNKLGLDLEKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGRDCRFGVI 1340
Query: 417 SMCIGSGMGAAAVFERGD 434
SMCIG+GMGAAAVFERGD
Sbjct: 1341 SMCIGTGMGAAAVFERGD 1394
>TC11551 homologue to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolase ,
partial (37%)
Length = 915
Score = 305 bits (780), Expect = 1e-83
Identities = 153/164 (93%), Positives = 158/164 (96%)
Frame = +1
Query: 271 KPAFKKDGTTTAGNASQVSDGAAAVLLMKRSVAVQKGLPILGIFRSFSAVGVDPAVMGVG 330
KPAFKKDG+TTAGNASQVSDGAAAVLLMKR VAVQKGLPILGIFRSF+AVGVDP+VMGVG
Sbjct: 4 KPAFKKDGSTTAGNASQVSDGAAAVLLMKRRVAVQKGLPILGIFRSFAAVGVDPSVMGVG 183
Query: 331 PAFAIPAAVKSAGLELSNIDLYEINEAFASQFVYSCKKLGLDPTKVNVNGGAMAFGHPLG 390
PAFAIPAAVKSAGLEL NIDL+EINEAFASQFVYSCKKLGLD KVNVNGGA+A GHPLG
Sbjct: 184 PAFAIPAAVKSAGLELGNIDLFEINEAFASQFVYSCKKLGLDTKKVNVNGGAIALGHPLG 363
Query: 391 ATGARCVATLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFERGD 434
ATGARCVATLLNEMKRRGKDCRFG ISMCIGSGMGAAAVFERGD
Sbjct: 364 ATGARCVATLLNEMKRRGKDCRFGAISMCIGSGMGAAAVFERGD 495
>TC17381 similar to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolase ,
partial (39%)
Length = 547
Score = 281 bits (719), Expect = 1e-76
Identities = 146/174 (83%), Positives = 157/174 (89%), Gaps = 7/174 (4%)
Frame = +3
Query: 1 MEKAVERQRVLLQHLNPNSVTSSH--HSTHLSASLCSA-----GQTGGSENDVVIVAAYR 53
MEKA++RQRVLL+HL P+S SS ST L+AS+C+A G+T GSE+DVVIVAAYR
Sbjct: 24 MEKAIQRQRVLLEHLQPSSSISSFSPQSTDLTASVCAAENSLQGKTSGSEDDVVIVAAYR 203
Query: 54 TAICKAKRGGFKDTLPDDLLASVLKAVIEKTNVEPSEVGDIVVGTVLGPGSERAIECRMA 113
TAICKAKRGGFKDTLPDDLLASVLKAVIEKTNV PSEVGDI+VGTVL PGSERAIECRMA
Sbjct: 204 TAICKAKRGGFKDTLPDDLLASVLKAVIEKTNVNPSEVGDIIVGTVLAPGSERAIECRMA 383
Query: 114 AFYAGFPDTVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQDTI 167
AFYAGFP+TVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQD I
Sbjct: 384 AFYAGFPETVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQDNI 545
>TC13543 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase , partial
(46%)
Length = 559
Score = 67.4 bits (163), Expect(2) = 4e-15
Identities = 53/172 (30%), Positives = 83/172 (47%), Gaps = 12/172 (6%)
Frame = +1
Query: 117 AGFPDTVPLRTVNRQCSSGLQAVADVAAYIKAGFYDIGIGAGLECMTQ------DTISGV 170
AG P +V TVN+ C+SG++A A I+ G D+ + G+E M+ + G
Sbjct: 1 AGLPKSVVCTTVNKVCASGMKATMLAAQSIQLGINDVVVAGGMENMSSAPKYLAEARKGS 180
Query: 171 RKTNPKVEIFAQARDCL------LSMGITSENVAQRYGVTRQEQDQAAVESHRRAAAATA 224
R + + + +D L + MG+ +E A + +TR++QD A++S R AA
Sbjct: 181 RLGHDSL-VDGMLKDGLWDAYKDVGMGVCAELCADNHSITREQQDDHAIQSFERGIAAQD 357
Query: 225 SGKFKDEIIPVSTKFVDPKTGEEKQIIVSVDDGIRPNANLVDLAKLKPAFKK 276
S F EI PV V G IV D+G+ + L KL+P+FK+
Sbjct: 358 SSAFTWEIAPVE---VSGGRG-RPSTIVDKDEGL-GKFDAAKLRKLRPSFKE 498
Score = 30.4 bits (67), Expect(2) = 4e-15
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = +3
Query: 278 GTTTAGNASQVSDGAAA 294
G+ TAGNAS +SDGAAA
Sbjct: 507 GSVTAGNASSISDGAAA 557
>TC14456 similar to UP|Q8S4Y1 (Q8S4Y1) Acetoacetyl-CoA thiolase , partial
(20%)
Length = 729
Score = 73.2 bits (178), Expect = 8e-14
Identities = 39/80 (48%), Positives = 55/80 (68%)
Frame = +3
Query: 352 YEINEAFASQFVYSCKKLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKDC 411
YEINEAF+ + + K LGL+ KVNV+GGA++ GHPLG +GAR + TLL +K+ K+
Sbjct: 3 YEINEAFSVVALANQKLLGLNSEKVNVHGGAVSLGHPLGCSGARILVTLLGVLKQ--KNG 176
Query: 412 RFGVISMCIGSGMGAAAVFE 431
++GV +C G G +A V E
Sbjct: 177 KYGVGGVCNGGGGASALVVE 236
>TC18226 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (19%)
Length = 426
Score = 64.7 bits (156), Expect = 3e-11
Identities = 34/79 (43%), Positives = 51/79 (64%)
Frame = +2
Query: 353 EINEAFASQFVYSCKKLGLDPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKDCR 412
EINEAF+ + + LG++ K+N++GGA++ GHPLG +GAR + TLL +KR +
Sbjct: 2 EINEAFSVVTLCHQQLLGINSEKLNLHGGAVSLGHPLGCSGARILVTLLGVLKR--NHGK 175
Query: 413 FGVISMCIGSGMGAAAVFE 431
+GV + C G G +A V E
Sbjct: 176 YGVGASCYGGGGASALVLE 232
>AI967848
Length = 436
Score = 64.7 bits (156), Expect = 3e-11
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Frame = +2
Query: 205 RQEQDQAAVESHRRAAAATASGKFKDEIIPVSTKFVDPKTGEEK-QIIVSVDDGIRPNAN 263
R EQD A++S R +A +G F EI+PV G K +V D+G+ +
Sbjct: 17 RDEQDSHAIQSFERGISAQKAGHFAWEIVPVEVS-----NGRGKPSTLVDKDEGLG-KFD 178
Query: 264 LVDLAKLKPAFKK-DGTTTAGNASQVSDGAAAVLLMKRSVAVQKGLPIL 311
L KL+P+FKK G+ TAGNAS +SDGAAA++L+ A + GL ++
Sbjct: 179 PARLRKLRPSFKKVGGSVTAGNASIISDGAAALVLVSEEKARELGLHVI 325
>TC15691 similar to UP|Q944G3 (Q944G3) Acetyl Co-A acetyltransferase,
partial (15%)
Length = 459
Score = 58.5 bits (140), Expect = 2e-09
Identities = 30/60 (50%), Positives = 41/60 (68%)
Frame = +2
Query: 372 DPTKVNVNGGAMAFGHPLGATGARCVATLLNEMKRRGKDCRFGVISMCIGSGMGAAAVFE 431
+P KVNV+GGA++ GHPLG +GAR + TLL + R K R+GV ++C G G +A V E
Sbjct: 2 NPEKVNVHGGAVSLGHPLGCSGARILVTLLGVL--RQKSGRYGVGAICNGGGGASALVVE 175
>AU251442
Length = 381
Score = 29.6 bits (65), Expect = 1.0
Identities = 14/47 (29%), Positives = 25/47 (52%)
Frame = +3
Query: 9 RVLLQHLNPNSVTSSHHSTHLSASLCSAGQTGGSENDVVIVAAYRTA 55
R+L H N + +T+SH+ H +A+ S G +V+V ++A
Sbjct: 171 RLLPHHTNKHLITASHNRFHFAATRISLSTPGFPSRRIVLVPPAKSA 311
>TC19351 similar to UP|H2A_CICAR (O65759) Histone H2A, partial (98%)
Length = 626
Score = 29.3 bits (64), Expect = 1.3
Identities = 18/42 (42%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +2
Query: 118 GFPDTVPLRTVNRQCSSGLQ-AVADVAAYIKAGFYDIGIGAG 158
G P T ++V+R +GLQ V VA Y+KAG Y +G+G
Sbjct: 86 GKPKTT--KSVSRSSKAGLQFPVGRVARYLKAGRYSQRVGSG 205
>AV768738
Length = 541
Score = 29.3 bits (64), Expect = 1.3
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -2
Query: 298 MKRSVAVQKGLPILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSNIDLYEIN 355
+K +V++ KG P + S AVG P + FAI A+++A E+ D + ++
Sbjct: 402 LKFNVSLLKGHPNVKAIHSSKAVGEPPFFLASSVFFAIKDAIRAARAEMGCDDWFPLD 229
>TC12676
Length = 482
Score = 27.3 bits (59), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -2
Query: 10 VLLQHLNPNSVTSSHHSTHLSASLCSAGQT 39
++L + SV+S HH +HL + C QT
Sbjct: 421 IILSTFSIKSVSSKHHRSHLYVTACQKCQT 332
>BP037373
Length = 488
Score = 27.3 bits (59), Expect = 5.1
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 304 VQKGLPILGIFRSFSAVGVDPAVMGVGPAFAIPAAVKSAGLELSN 348
V++ P L F S G P+ P PAAVKSA L +SN
Sbjct: 237 VRRPCPTLAPFTSSDPEG--PSARNPSPPPTEPAAVKSASLAISN 109
>AV422170
Length = 306
Score = 26.9 bits (58), Expect = 6.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 70 DDLLASVLKAVIEKTNVEPSEVGDIVVGTVLGPGSE 105
D L SV V+E+ + ++GD+ T+L PG+E
Sbjct: 275 DVRLPSVGVGVVERGGLGRLDIGDVARETILDPGTE 168
>TC14582
Length = 1793
Score = 26.9 bits (58), Expect = 6.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Frame = +3
Query: 199 QRYGVTRQEQDQAAVESHRRA------AAATASGKF---KDEIIPVS 236
QRY R ++ + +E H A A T GK KDEII +S
Sbjct: 1128 QRYATIRSKESVSIIEKHTEALFGRPDAVITPEGKINSSKDEIIKIS 1268
>TC16882 homologue to UP|H2A_CICAR (O65759) Histone H2A, partial (96%)
Length = 694
Score = 26.6 bits (57), Expect = 8.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 126 RTVNRQCSSGLQ-AVADVAAYIKAGFYDIGIGAG 158
++V+R +GLQ V +A ++KAG Y +GAG
Sbjct: 147 KSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAG 248
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,760,748
Number of Sequences: 28460
Number of extensions: 64689
Number of successful extensions: 348
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of query: 435
length of database: 4,897,600
effective HSP length: 93
effective length of query: 342
effective length of database: 2,250,820
effective search space: 769780440
effective search space used: 769780440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Medicago: description of AC126019.10