TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126018.13 - phase: 0 
         (320 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

NP459535 cytochrome f [Lotus japonicus]                               607  e-175
AV776064                                                               29  1.2
TC8138 weakly similar to UP|Q84630 (Q84630) A316R protein, parti...    27  4.6
TC18842 similar to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (31%)              27  6.0
AV772859                                                               27  6.0

>NP459535 cytochrome f [Lotus japonicus]
          Length = 963

 Score =  607 bits (1566), Expect = e-175
 Identities = 304/320 (95%), Positives = 314/320 (98%)
 Frame = +1

Query: 1   MQTRNAFSWIKEEITRSISVLLMIYIITRAPISNAYPIFAQQGYENPREATGRIVCANCH 60
           MQTRNAFS+IKEEITRSISVLL+IYII RAPISNAYPIFAQQGYENPREATGRIVCANCH
Sbjct: 1   MQTRNAFSYIKEEITRSISVLLVIYIIIRAPISNAYPIFAQQGYENPREATGRIVCANCH 180

Query: 61  LANKPVDIEVPQAVLPDTVFEAVVRIPYDMQVKQVLANGKKGALNVGAVLILPEGFELAP 120
           LANKPVDIEVPQ VLPDTVFEAVVRIPYDMQVKQVLANGK+GALNVGAVLILPEGFELAP
Sbjct: 181 LANKPVDIEVPQTVLPDTVFEAVVRIPYDMQVKQVLANGKRGALNVGAVLILPEGFELAP 360

Query: 121 PDRISPEIKEKIGNLSFQSYRPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLK 180
            DRISPEIKEK+GNLSFQSYRPTKKNILVVGPVPG+KYSEITFPILSPDPAT RDV+FLK
Sbjct: 361 TDRISPEIKEKMGNLSFQSYRPTKKNILVVGPVPGQKYSEITFPILSPDPATNRDVNFLK 540

Query: 181 YPIYVGGNRGRGQIYPDGSKSNNNVYNATATGIVNKIIRKEKGGYEITIVDASDGREVID 240
           YPIYVGGNRGRGQIYPDGSKSNNNVYNAT +GI+NKIIRK+KGGYEITIVDASDGREVID
Sbjct: 541 YPIYVGGNRGRGQIYPDGSKSNNNVYNATTSGIINKIIRKDKGGYEITIVDASDGREVID 720

Query: 241 IIPPGPELLVSEGESMKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIILAQ 300
           IIPPGPELLVSEGES+KLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASII AQ
Sbjct: 721 IIPPGPELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASIIFAQ 900

Query: 301 IFLVLKKKQFEKVQLSEMNF 320
           IFLVLKKKQFEKVQLSEMNF
Sbjct: 901 IFLVLKKKQFEKVQLSEMNF 960


>AV776064 
          Length = 418

 Score = 28.9 bits (63), Expect = 1.2
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
 Frame = -2

Query: 93  KQVLANGKKGALNVGAVLILPEGFELAPPDR-ISPEIKEKIGNLSFQSYRPTKK----NI 147
           +++L  G+KG   +G +L +PE     P +R    E++ K+  L  ++ RP K+     +
Sbjct: 366 RRLLRGGRKG*SRIGNLLPVPE-----PGNRHTHNELENKVSRLEEENERPRKRKELEQM 202

Query: 148 LVVGPVPGKKY 158
           L   P P  KY
Sbjct: 201 LPCTPPPEPKY 169


>TC8138 weakly similar to UP|Q84630 (Q84630) A316R protein, partial (36%)
          Length = 928

 Score = 26.9 bits (58), Expect = 4.6
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +3

Query: 141 RPTKKNILVVGPVPGKKYSEITFPILSPDPATKRDVHFLKYPIY 184
           +P  K I V  P+P  K      P+L P P  K     +  PIY
Sbjct: 375 KPIPKPIFVKKPIPFYKPVPKVIPVLKPIPIYKPVPKVIPVPIY 506


>TC18842 similar to UP|Q8RVQ6 (Q8RVQ6) SEC6, partial (31%)
          Length = 711

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -3

Query: 158 YSEITFPI-LSPDPATKRDVHFLKYPIYV 185
           Y+  T+P  LSP+P+    ++FLK P+Y+
Sbjct: 226 YAHSTYPCSLSPEPSIFAVLNFLKRPLYL 140


>AV772859 
          Length = 329

 Score = 26.6 bits (57), Expect = 6.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 187 GNRGRGQIYPDGSKSNNNVYNA 208
           G+R  G+IYP  SKS +  YN+
Sbjct: 38  GSRATGKIYPHKSKSQSG*YNS 103


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.140    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,727,036
Number of Sequences: 28460
Number of extensions: 58743
Number of successful extensions: 252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of query: 320
length of database: 4,897,600
effective HSP length: 90
effective length of query: 230
effective length of database: 2,336,200
effective search space: 537326000
effective search space used: 537326000
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)