BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126015.12 - phase: 0
(1620 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV777425 116 2e-26
AI967347 114 9e-26
TC11967 homologue to UP|AAS09978 (AAS09978) MYB transcription fa... 37 0.025
TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%) 35 0.094
TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroq... 33 0.36
TC8979 weakly similar to UP|Q8RY59 (Q8RY59) At1g32230/F3C3_1, pa... 32 0.79
AV780431 32 1.0
TC8329 similar to UP|BAD06717 (BAD06717) WRKY transcription fact... 31 1.4
TC16741 weakly similar to UP|Q9FNS9 (Q9FNS9) Fructan 1-exohydrol... 31 1.4
BP067278 31 1.4
TC15397 similar to UP|CALX_SOYBN (Q39817) Calnexin homolog precu... 31 1.4
TC12162 similar to AAS09999 (AAS09999) MYB transcription factor,... 30 3.0
TC16449 similar to UP|Q940R4 (Q940R4) AT4g16560/dl4305c, partial... 30 3.9
TC11299 29 5.2
AW720001 29 5.2
BI419295 29 5.2
TC15865 29 6.7
TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precurso... 29 6.7
TC17360 similar to UP|AAR92257 (AAR92257) At5g19340, partial (34%) 29 6.7
AV409036 29 6.7
>AV777425
Length = 575
Score = 116 bits (291), Expect = 2e-26
Identities = 60/95 (63%), Positives = 71/95 (74%)
Frame = -1
Query: 1517 FRGRDGPQVQPFMVDVQHRQDLFSEMQRRHSFEAISSLQQQGRGMMGMNSVGRPGILVGG 1576
FR RDG ++QP MVDV+H QD+ SEMQRR+ FE I SL +QG GM+ MN V RPGI VGG
Sbjct: 575 FRNRDGLKLQPSMVDVKHCQDVSSEMQRRNGFETIPSLLKQGEGMVAMNGVRRPGIPVGG 396
Query: 1577 SCSGVSDPVAAIKMHYSNSEKYGGQNGSVVRDDES 1611
SGVSDPVAAIKMHYSN+ + G Q G+ D+S
Sbjct: 395 LGSGVSDPVAAIKMHYSNAAQTGVQTGNNTSKDKS 291
>AI967347
Length = 321
Score = 114 bits (286), Expect = 9e-26
Identities = 65/105 (61%), Positives = 77/105 (72%), Gaps = 1/105 (0%)
Frame = +1
Query: 1019 GESDTDDACVVEAGSVVDADKSGNKTDEDLPSDALNTFHDESNPLEATSLSAKLNESREI 1078
G TDDACVVE GS V D SG KTDEDLPS +N FHDESNP+E +LSA+LNES+E
Sbjct: 7 GTRHTDDACVVETGSAVGTDTSGTKTDEDLPS--MNAFHDESNPVEPRNLSAELNESKEN 180
Query: 1079 SGTEVCLENVDVASVACAINVESKLGS-DVSGVGLCTTDKSGSVN 1122
+ T V LE++++ S ACAI VESKLGS D S V L + DKS SV+
Sbjct: 181 NLTAVDLEDINLISDACAIKVESKLGSDDDSEVVLASPDKSASVS 315
>TC11967 homologue to UP|AAS09978 (AAS09978) MYB transcription factor,
partial (32%)
Length = 664
Score = 37.0 bits (84), Expect = 0.025
Identities = 20/69 (28%), Positives = 34/69 (48%)
Frame = +3
Query: 722 VEDPLAIEKERSMINPWTSEEKELFLEKFAAFGKDFRKIASFLDHKTTADCIEFYYKNHK 781
+ P I K R WT +E + FLE F +D++KI +F+ KT ++H
Sbjct: 210 IRKPYTITKSRES---WTEQEHDKFLEALQLFDRDWKKIEAFIGSKTV-----IQIRSHA 365
Query: 782 SECFEKLKR 790
+ F K+++
Sbjct: 366 QKYFLKVQK 392
>TC9596 similar to UP|AAR24722 (AAR24722) At5g49400, partial (66%)
Length = 1196
Score = 35.0 bits (79), Expect = 0.094
Identities = 48/175 (27%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Frame = +2
Query: 49 QRDWRGHSW--EASNGSPNLSR--RPQDMNNEQRSVDDSPTYSSHPHSDFVNTWEQHNLK 104
Q+ ++G W E N +SR R Q + N + V+ S +Y ++D + E+
Sbjct: 437 QKCYQGGHWTYECKNERVYISRPSRTQQLKNPKLRVNVSVSYDLE-NNDVDDKEEKAKSS 613
Query: 105 DQHAKTGGVNGLGTGPRCDRENSLSSIDWKPLKWTRSGSLSSRGSGFSHSSSSRSMAGTD 164
+ AK + +G D E+S+ T SGS S GS +S SSS S + +D
Sbjct: 614 SKKAKRKHRSDSDSGS--DSEDSVFE--------TESGSSSVTGSDYSSGSSSDS-SSSD 760
Query: 165 SYE------------GKPNLKHKNVTAVESNSGEATACVTSSMPSEDATSRKKPR 207
S E K +HK ++ +S +A S S+D +SR+K R
Sbjct: 761 SEEERRRRRKKKTQKKKKGRRHKKYSSSSESSDSESA---SDSDSDDKSSRRKRR 916
>TC16353 weakly similar to UP|HQGT_ARATH (Q9M156) Probable hydroquinone
glucosyltransferase (Arbutin synthase) , partial (52%)
Length = 885
Score = 33.1 bits (74), Expect = 0.36
Identities = 39/154 (25%), Positives = 59/154 (37%)
Frame = +2
Query: 152 SHSSSSRSMAGTDSYEGKPNLKHKNVTAVESNSGEATACVTSSMPSEDATSRKKPRLNWG 211
S S SS + P L + + + SN S +PS TSRK P L +
Sbjct: 125 SPSDSSSTTTSKSPSSSPPKLHRQKLKSPSSNRFRIPFHTFSFLPSTSPTSRKTP*LKY- 301
Query: 212 EGLAKYEKKKVDVPDPGSNKDGSVSSAGNMEPCSSISPNLVDKSPKVTGFSDCASPATPS 271
E + Y P + SS+ + S SP + +P +T S P P
Sbjct: 302 ESPSPYSAPFRPSATPSAPSPPPHSSSTSSALTPSTSPE--NSAPPLTSSS---LPPPPR 466
Query: 272 SVACSSSPGVDDKLLGKVGNADNDVSNLTDSPAP 305
S++ S+S + + N+ N + SPAP
Sbjct: 467 SLSSSTSLAWTGRFIASSENS----PNRSKSPAP 556
>TC8979 weakly similar to UP|Q8RY59 (Q8RY59) At1g32230/F3C3_1, partial
(12%)
Length = 833
Score = 32.0 bits (71), Expect = 0.79
Identities = 18/42 (42%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
Frame = +1
Query: 175 KNVTAVESNSGEATACVTSSMPSED------ATSRKKPRLNW 210
KNV+AV SNS + + + S P+ED A+S K PR W
Sbjct: 4 KNVSAVNSNSQGSKSLLQSQSPTEDTGITTVASSHKAPRSPW 129
>AV780431
Length = 473
Score = 31.6 bits (70), Expect = 1.0
Identities = 12/12 (100%), Positives = 12/12 (100%)
Frame = -1
Query: 1609 DESWGGKGDLGR 1620
DESWGGKGDLGR
Sbjct: 473 DESWGGKGDLGR 438
>TC8329 similar to UP|BAD06717 (BAD06717) WRKY transcription factor 1,
partial (41%)
Length = 1717
Score = 31.2 bits (69), Expect = 1.4
Identities = 22/73 (30%), Positives = 36/73 (49%)
Frame = -3
Query: 1071 KLNESREISGTEVCLENVDVASVACAINVESKLGSDVSGVGLCTTDKSGSVNGVGLGGTV 1130
KL + +IS C ++A+ + A+ KLGS V V +C+T G++ LG
Sbjct: 1073 KLAKLNQISIQFWCKSLPEMAATSAAL----KLGSVVKEVAICSTKTCGNLAESFLGSAF 906
Query: 1131 RESISASEIIKPR 1143
ES+ + +K R
Sbjct: 905 LESLLHRDFVKSR 867
>TC16741 weakly similar to UP|Q9FNS9 (Q9FNS9) Fructan 1-exohydrolase I
precursor, partial (25%)
Length = 680
Score = 31.2 bits (69), Expect = 1.4
Identities = 23/72 (31%), Positives = 39/72 (53%), Gaps = 4/72 (5%)
Frame = -3
Query: 674 PTTEIINFTSKLLSESQAQLQRNTLKMPALILD----EKEKMVTKFISSNGLVEDPLAIE 729
P II + KLLSE +L N+ K+P ++L ++ + + I L+ED L I
Sbjct: 312 PKLSIIE*SIKLLSEILLRLGSNSKKLPYVVLSRSFRSEDLLWSLHIRPKYLLED-LYIR 136
Query: 730 KERSMINPWTSE 741
K+ ++ + W+SE
Sbjct: 135 KKTAVCSLWSSE 100
>BP067278
Length = 562
Score = 31.2 bits (69), Expect = 1.4
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Frame = +1
Query: 123 DRENSLS-SIDWKPLKWTRSGSLSSRGSGFSHSSSSRSMAGTDSYEGKPNLKHKNVTAVE 181
+R+ S S S+D KP + +RS SG H SRS + D + L+ + +
Sbjct: 52 ERKRSRSVSVDEKPQRRSRSSPRKVDESGSRHKKRSRSKSVEDKHNFPEKLEENRIR--K 225
Query: 182 SNSGEATACVTSSMPSEDATSRKKPRLNWGEGLAKYEK----KKVDVPDPGSNKDGSV 235
S + + S S D T ++ +G+ + K K V+ +K G V
Sbjct: 226 SRHNDKRHSRSRSTESRDQTDAREDERKYGKSKHRDSKRTRSKSVEGKHRSKDKSGEV 399
>TC15397 similar to UP|CALX_SOYBN (Q39817) Calnexin homolog precursor,
partial (58%)
Length = 1103
Score = 31.2 bits (69), Expect = 1.4
Identities = 19/46 (41%), Positives = 23/46 (49%)
Frame = -3
Query: 139 TRSGSLSSRGSGFSHSSSSRSMAGTDSYEGKPNLKHKNVTAVESNS 184
T SGS S+ SGFS SSSS SM + S + A+ S S
Sbjct: 957 TSSGSSSNHPSGFSASSSSISMGASSSQSSGFTASGSGILALSSQS 820
>TC12162 similar to AAS09999 (AAS09999) MYB transcription factor, partial
(56%)
Length = 751
Score = 30.0 bits (66), Expect = 3.0
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 729 EKERSMINPWTSEEKELFLEKFAAFGK-DFRKIA 761
E+ER PWT EE LFL +GK D+R I+
Sbjct: 553 EQERKKGVPWTEEEHRLFLLGLKKYGKGDWRNIS 654
>TC16449 similar to UP|Q940R4 (Q940R4) AT4g16560/dl4305c, partial (18%)
Length = 613
Score = 29.6 bits (65), Expect = 3.9
Identities = 18/52 (34%), Positives = 25/52 (47%)
Frame = +2
Query: 1448 SGLSSLPDSSFLLAKYPAAFSNYPTSSSNLEQQPPLQAFAKNSQRHLTGAST 1499
+G S P S+ L A + SN PT + L Q P+Q + Q HL S+
Sbjct: 65 NGFSFSPVSALLHALHFTLISNGPTPLNTLNFQIPIQQYPPPPQNHLNPFSS 220
>TC11299
Length = 498
Score = 29.3 bits (64), Expect = 5.2
Identities = 18/63 (28%), Positives = 29/63 (45%)
Frame = +2
Query: 216 KYEKKKVDVPDPGSNKDGSVSSAGNMEPCSSISPNLVDKSPKVTGFSDCASPATPSSVAC 275
++ ++K P P S +DG +S G P S+ P S+C +P T S +
Sbjct: 131 RFSRRKTPSPPPSSQRDGPIS--GAQFPLSTSPP------------SECTNPMTTVSSSA 268
Query: 276 SSS 278
+SS
Sbjct: 269 TSS 277
>AW720001
Length = 542
Score = 29.3 bits (64), Expect = 5.2
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 195 MPSEDATSRKKPRLNWGEGLAKYEKKKVDVPDP 227
+PS+ +TS+KKPR +G K +KKK D P
Sbjct: 81 LPSKASTSKKKPRDADEDGKKKKQKKKKDPNAP 179
>BI419295
Length = 578
Score = 29.3 bits (64), Expect = 5.2
Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 4/80 (5%)
Frame = +2
Query: 505 VRCNRKNTSVSACNNVNTPTEVKDSLGDVTFGANLCSSYGDTYKSIIASN----KESANR 560
+R RKN+ +A NV EV+ LG + + + N E ++
Sbjct: 329 IRSFRKNSLTTASKNVE---EVEGKLGSGAMFVKVSMDGAPYLRKVDLKNYSTYAELSSA 499
Query: 561 AHKLFTKLVPKECKKHGNMG 580
K+F+ +C HGNMG
Sbjct: 500 LEKMFSCFTIGQCGSHGNMG 559
>TC15865
Length = 528
Score = 28.9 bits (63), Expect = 6.7
Identities = 20/51 (39%), Positives = 25/51 (48%)
Frame = -1
Query: 402 SQQADSSSKFYEERVEVSQKVIRPVPLKIISSDEPNTVKMPQSTNLCSIHE 452
S S K E +VE+ QKV P PLK + NT +TN+ SI E
Sbjct: 276 SNSCTSEGK*QENKVEI-QKVGSPTPLKGAVLKQKNTDNEVDNTNIESISE 127
>TC15784 similar to UP|PE31_ARATH (Q9LHA7) Peroxidase 31 precursor (Atperox
P31) (ATP41) , partial (38%)
Length = 475
Score = 28.9 bits (63), Expect = 6.7
Identities = 24/106 (22%), Positives = 39/106 (36%)
Frame = +1
Query: 174 HKNVTAVESNSGEATACVTSSMPSEDATSRKKPRLNWGEGLAKYEKKKVDVPDPGSNKDG 233
H + ++ S+S + S S + + P+ + P ++
Sbjct: 52 HSSSSSQHSHSSPPSHTRDSHSTSTNTRAHNSPKSSATPSPTNKSPPPPPAPPRSASSST 231
Query: 234 SVSSAGNMEPCSSISPNLVDKSPKVTGFSDCASPATPSSVACSSSP 279
+ S+ P SS SP L P T S SPATPS+ + P
Sbjct: 232 TASTPTAATPPSS-SPQLPSTKPNATPTSTSPSPATPSTSSSELKP 366
>TC17360 similar to UP|AAR92257 (AAR92257) At5g19340, partial (34%)
Length = 574
Score = 28.9 bits (63), Expect = 6.7
Identities = 18/47 (38%), Positives = 24/47 (50%), Gaps = 3/47 (6%)
Frame = +2
Query: 133 WKPL---KWTRSGSLSSRGSGFSHSSSSRSMAGTDSYEGKPNLKHKN 176
WK L K RS +LS S S SSS+ S+ + EGK + K+
Sbjct: 65 WKELLRLKKQRSSTLSPSSSSSSSSSSASSLGDVAAQEGKDGTRSKD 205
>AV409036
Length = 429
Score = 28.9 bits (63), Expect = 6.7
Identities = 16/46 (34%), Positives = 23/46 (49%)
Frame = +2
Query: 234 SVSSAGNMEPCSSISPNLVDKSPKVTGFSDCASPATPSSVACSSSP 279
S S+ +S+SP K+ VTG +S +PS+VA S P
Sbjct: 200 STPSSATTTTTTSLSPATSAKTAAVTGPKAASSATSPSAVAAGSPP 337
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.128 0.364
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,931,753
Number of Sequences: 28460
Number of extensions: 377023
Number of successful extensions: 1707
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of query: 1620
length of database: 4,897,600
effective HSP length: 103
effective length of query: 1517
effective length of database: 1,966,220
effective search space: 2982755740
effective search space used: 2982755740
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC126015.12