TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126015.11 + phase: 0 
         (371 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP035561                                                               94  4e-20
TC17944                                                                38  0.002
TC20248 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (8%)    36  0.012
AV423237                                                               28  2.4
TC13179 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (5%)    28  3.2
BP077142                                                               26  9.3
TC11169 similar to UP|Q9SL72 (Q9SL72) At2g20090 protein, partial...    26  9.3

>BP035561 
          Length = 495

 Score = 94.0 bits (232), Expect = 4e-20
 Identities = 46/57 (80%), Positives = 51/57 (88%), Gaps = 2/57 (3%)
 Frame = -3

Query: 317 RPSKPVPGDCGYHLHAHRLFLSHPITNEIIEMIAPLPSILQTHEEA--IAQAQQTTA 371
           RP+KPVPGDCGY+LHAH+L LSHPITNEII++IAPLPSIL T EEA  IA AQQTTA
Sbjct: 490 RPTKPVPGDCGYYLHAHKLILSHPITNEIIDIIAPLPSILMTAEEAKEIAVAQQTTA 320


>TC17944 
          Length = 537

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 22/29 (75%), Positives = 24/29 (81%), Gaps = 2/29 (6%)
 Frame = +3

Query: 345 IIEMIAPLPSILQTHEEA--IAQAQQTTA 371
           II++IAPLPSIL T EEA  IA AQQTTA
Sbjct: 120 IIDIIAPLPSILMTAEEAKEIAVAQQTTA 206


>TC20248 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (8%)
          Length = 496

 Score = 35.8 bits (81), Expect = 0.012
 Identities = 34/117 (29%), Positives = 52/117 (44%)
 Frame = +3

Query: 109 KPSGLQVLPGGLFQQRTVLTQLQWETNNKSTIEAHQKPHPVPVHRLGRGTSGILLCAKTK 168
           KP G+ V  GG+  +R++      +    S ++      P  VHRL R  SGIL+  +T+
Sbjct: 3   KPPGMPV-QGGIDIKRSL------DVVAASCLKYEYSEPPRLVHRLDRDCSGILVMGRTQ 161

Query: 169 LARARLASYFADGTSRIEGKGRHTNQELGKIAKIYRALVSGIINNDQVTINQPIGMV 225
            +   L S F + TS         N+ L    + YRALV G     +  +   +G V
Sbjct: 162 TSATVLHSIFREKTSSASDDLGTENRVL---QRKYRALVIGCPRRPRGLVTASLGKV 323


>AV423237 
          Length = 310

 Score = 28.1 bits (61), Expect = 2.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 275 RIHLSFIGHPLLGDPLYAVGGQPKCLDCD 303
           R+HL F+G  ++G+  Y VG    C+DC+
Sbjct: 91  RVHLLFMGLIIMGNLCYLVG----CIDCE 165


>TC13179 similar to UP|Q9ZVA9 (Q9ZVA9) F9K20.4 protein, partial (5%)
          Length = 533

 Score = 27.7 bits (60), Expect = 3.2
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 268 SGRPHQIRIHLS-FIGHPLLGDPLYAVGGQPKCLDCDFLD 306
           +GR HQ+R+H +  +G P++GD  Y      K    D  D
Sbjct: 11  TGRKHQLRVHCAEVLGTPIVGDYKYVWQAHRKWSHFDLSD 130


>BP077142 
          Length = 385

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 301 DCDFLDESFAEDGGYTRP 318
           DC+  +E  AE+GG T+P
Sbjct: 144 DCNLFEEKHAENGGKTKP 197


>TC11169 similar to UP|Q9SL72 (Q9SL72) At2g20090 protein, partial (14%)
          Length = 650

 Score = 26.2 bits (56), Expect = 9.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 327 GYHLHAHRLFLSHPI 341
           G+HLH H+L LS P+
Sbjct: 118 GHHLHNHKLLLSFPL 162


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,270,484
Number of Sequences: 28460
Number of extensions: 87480
Number of successful extensions: 439
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of query: 371
length of database: 4,897,600
effective HSP length: 92
effective length of query: 279
effective length of database: 2,279,280
effective search space: 635919120
effective search space used: 635919120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)