TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126011.4 + phase: 0 /pseudo
         (133 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP069747                                                               27  1.6
TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-...    25  3.5
TC18277 weakly similar to UP|Q9FIV7 (Q9FIV7) Cationic amino acid...    25  3.5
BP054232                                                               25  4.5
TC8990 homologue to UP|SR52_LYCES (P49972) Signal recognition pa...    24  7.7

>BP069747 
          Length = 436

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 19/55 (34%), Positives = 26/55 (46%), Gaps = 6/55 (10%)
 Frame = -1

Query: 76  LHAIDRKIIETILEK-NTLKKIWASMRGKDKGYKSI*-----GKGLRT*TISDIF 124
           +H I R++ +       TLKK WAS   K K  K +*      K +   TI D+F
Sbjct: 202 VHIIGRRLSDNFEHNWTTLKKKWASEDRKQKRSKKV*SRELNAKAMSWTTIDDVF 38


>TC15020 homologue to UP|Q9QX99 (Q9QX99) Transcription factor (T-cell
           leukemia, homeobox 1), partial (5%)
          Length = 1304

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 17/37 (45%), Positives = 18/37 (47%)
 Frame = +1

Query: 15  FGNGKQHK*QNLDGNFLRSKEYWSLVDDGVARLGSGG 51
           +G  K  K   LDGNFL  K    LV  G A  GS G
Sbjct: 937 YGGIKSMKRLFLDGNFLDGKPPAGLVAAGAAVTGSLG 1047


>TC18277 weakly similar to UP|Q9FIV7 (Q9FIV7) Cationic amino acid
           transporter-like protein, partial (19%)
          Length = 557

 Score = 25.4 bits (54), Expect = 3.5
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 45  ARLGSGGPLTAAEQKT-PYEMMLKYLKVKNYLLHAIDRKIIETIL 88
           A  G+  PL   E  T  Y    KYL V+NY+ +   RK I  ++
Sbjct: 230 ATSGNKKPLLVKEDVTIDYPFNCKYLAVENYIHNGNRRKFIGWVI 364


>BP054232 
          Length = 417

 Score = 25.0 bits (53), Expect = 4.5
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +3

Query: 47  LGSGGPLTAAEQKTPYEMMLKYLKVKNYLLHAIDRKIIETILEKNTLKKIWASMRGKDKG 106
           LG GGP+ A            +   ++ + H+   ++++T+L +   +  W       +G
Sbjct: 150 LGRGGPVRA------------WFTWEHDMKHSF--RVLQTVLSQQ-YQPAWLGGEIGSEG 284

Query: 107 YKSI*GKGLRT 117
           Y S+* KGL+T
Sbjct: 285 YPSL*SKGLKT 317


>TC8990 homologue to UP|SR52_LYCES (P49972) Signal recognition particle 54
           kDa protein 2 (SRP54), partial (50%)
          Length = 1141

 Score = 24.3 bits (51), Expect = 7.7
 Identities = 9/22 (40%), Positives = 15/22 (67%)
 Frame = +2

Query: 81  RKIIETILEKNTLKKIWASMRG 102
           R+++E + E   L KIW+ M+G
Sbjct: 494 REVMEMMEEYKRLAKIWSKMKG 559


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.333    0.147    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,955,133
Number of Sequences: 28460
Number of extensions: 20487
Number of successful extensions: 112
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of query: 133
length of database: 4,897,600
effective HSP length: 80
effective length of query: 53
effective length of database: 2,620,800
effective search space: 138902400
effective search space used: 138902400
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 50 (23.9 bits)