BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126009.3 - phase: 0 /pseudo
(60 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19996 weakly similar to UP|ENL1_ARATH (Q9SK27) Early nodulin-l... 52 3e-08
TC10483 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 44 6e-06
TC13215 similar to UP|Q39040 (Q39040) Lamin, partial (15%) 44 8e-06
TC17588 similar to UP|BCP_PEA (Q41001) Blue copper protein precu... 42 2e-05
AU089318 39 2e-04
AV407087 39 2e-04
TC17556 similar to UP|Q39131 (Q39131) Lamin (AT5G15350/F8M21_240... 39 2e-04
TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein... 39 3e-04
AV413520 36 0.001
AU089440 31 0.055
AV409301 27 0.80
AV417031 27 0.80
AV416576 26 1.4
AV410595 25 4.0
TC14450 similar to UP|Q9SEX5 (Q9SEX5) Ornithine carbamoyltransfe... 24 5.2
TC13782 similar to UP|Q9ST97 (Q9ST97) Alpha-1,3-mannosyl-glycopr... 24 5.2
TC12447 weakly similar to GB|AAM63773.1|21555085|AY086719 phytoc... 24 6.7
TC10398 weakly similar to UP|Q9FII5 (Q9FII5) Receptor protein ki... 24 6.7
TC14275 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (... 23 8.8
>TC19996 weakly similar to UP|ENL1_ARATH (Q9SK27) Early nodulin-like protein
1 precursor (Phytocyanin-like protein), partial (36%)
Length = 458
Score = 51.6 bits (122), Expect = 3e-08
Identities = 25/60 (41%), Positives = 33/60 (54%)
Frame = +3
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLGTMFS 60
M +S +VL+++ V DH VGD GW + DYT WA K F+VGDNL +S
Sbjct: 87 MVASLLVLLVAFPTVF------GADHTVGDASGWNIGVDYTTWASGKTFKVGDNLVFTYS 248
>TC10483 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (24%)
Length = 552
Score = 43.9 bits (102), Expect = 6e-06
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Frame = +3
Query: 1 MASSRVVLILSI--SMVLLSSVAIATDHIVGDDKGWTVDFD----YTQWAQDKVFRVGDN 54
MA + VL+L++ + L + + T H+VGD GWT+ YT WA +K F VGD
Sbjct: 87 MARNMNVLLLALLAATTLFHTSSAQTRHVVGDSTGWTIPTGGASFYTNWAANKTFSVGDT 266
Query: 55 L 55
L
Sbjct: 267 L 269
>TC13215 similar to UP|Q39040 (Q39040) Lamin, partial (15%)
Length = 452
Score = 43.5 bits (101), Expect = 8e-06
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Frame = +2
Query: 10 LSISMVLLSSVAI------ATDHIVGDDKGWTVDFDYTQWAQDKVFRVGD 53
L+ S++LL+ + ATDHIVG ++GW +YT WA ++ F VGD
Sbjct: 74 LTCSLLLLTFITFTISPVTATDHIVGANRGWNPGQNYTLWANNQTFYVGD 223
>TC17588 similar to UP|BCP_PEA (Q41001) Blue copper protein precursor,
partial (61%)
Length = 747
Score = 42.4 bits (98), Expect = 2e-05
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = +1
Query: 22 IATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
+AT + VGD GW DY+ W DK F VGD+L
Sbjct: 1 LATVYSVGDTSGWAAGADYSTWTSDKTFAVGDSL 102
>AU089318
Length = 641
Score = 39.3 bits (90), Expect = 2e-04
Identities = 20/53 (37%), Positives = 31/53 (57%), Gaps = 2/53 (3%)
Frame = +3
Query: 5 RVVLILSISMVLLSSVAIATDHIVGDDKGWTV--DFDYTQWAQDKVFRVGDNL 55
R V+++ + M + V+ A H VGD GWT+ + DY +WA F+VGD +
Sbjct: 48 RAVVLVMVVMAAVQ-VSYAAVHKVGDSAGWTILGNVDYKKWAAPXNFQVGDTI 203
>AV407087
Length = 363
Score = 39.3 bits (90), Expect = 2e-04
Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKG-WTVDFDYTQWAQDKVFRVGDNL 55
M +V++ LS+ L+ +A+ATDHIVG G W + W + F VGDNL
Sbjct: 24 MGVLQVIIRLSLVATLIK-LAMATDHIVGGPNGGWDATSNLQSWGTSQQFSVGDNL 188
>TC17556 similar to UP|Q39131 (Q39131) Lamin (AT5G15350/F8M21_240), partial
(68%)
Length = 595
Score = 38.9 bits (89), Expect = 2e-04
Identities = 18/48 (37%), Positives = 28/48 (57%)
Frame = +2
Query: 6 VVLILSISMVLLSSVAIATDHIVGDDKGWTVDFDYTQWAQDKVFRVGD 53
V+L L +++L+ A +VGD K W + +YT WA+DK F + D
Sbjct: 116 VLLFLGFAVLLMVPEVSAKRWLVGDGKFWNPNVNYTVWARDKHFYIDD 259
>TC12474 weakly similar to UP|O82576 (O82576) Blue copper protein
(Fragment), partial (44%)
Length = 818
Score = 38.5 bits (88), Expect = 3e-04
Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Frame = +1
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDKGWTVDFD---YTQWAQDKVFRVGDNL 55
M + ++L L + L + T H+VGD GW V + YT WA F VGD L
Sbjct: 82 MNMNALLLALLAATALFHCSSAQTRHVVGDSAGWFVPGNTSFYTSWAAKNTFAVGDTL 255
>AV413520
Length = 280
Score = 36.2 bits (82), Expect = 0.001
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = +1
Query: 14 MVLLSSVAIATDHIVGDDKGWTVDFD-----YTQWAQDKVFRVGDNL 55
++L+ + A + +VG KGW+V D + QWA+ F+VGD+L
Sbjct: 118 LLLMVHKSAAYEFVVGGQKGWSVPSDPNFNPFNQWAEKSRFQVGDSL 258
>AU089440
Length = 324
Score = 30.8 bits (68), Expect = 0.055
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 26 HIVGDDKGWTVDFDYTQWAQDKVFR 50
H+VG D GW + D W+ +VFR
Sbjct: 109 HVVGADPGWDLASDLRAWSSXRVFR 183
>AV409301
Length = 360
Score = 26.9 bits (58), Expect = 0.80
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 28 VGDDKGWTVD--FDYTQWAQDKVFRVGDNL 55
VG GW ++ +Y QWA F+V DNL
Sbjct: 209 VGGKDGWVLNPSENYNQWAGRNRFQVNDNL 298
>AV417031
Length = 244
Score = 26.9 bits (58), Expect = 0.80
Identities = 12/28 (42%), Positives = 16/28 (56%), Gaps = 5/28 (17%)
Frame = +1
Query: 23 ATDHIVGDDKGWTVDFD-----YTQWAQ 45
A + +VG KGW+V D Y QWA+
Sbjct: 151 AYEFVVGGQKGWSVPSDPSTNPYNQWAE 234
>AV416576
Length = 424
Score = 26.2 bits (56), Expect = 1.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +2
Query: 3 SSRVVLILSISMVLLSSVAIATDHIVGDDKGWTV 36
SS ++ I +L+ + + DH V DKGW++
Sbjct: 314 SSVATRVIPIICQILNLIELRLDHRVHQDKGWSL 415
>AV410595
Length = 225
Score = 24.6 bits (52), Expect = 4.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 29 GDDKGWTVDFDYTQWAQ 45
GDD G ++ FDY W +
Sbjct: 97 GDDNGVSIGFDYEVWTR 147
>TC14450 similar to UP|Q9SEX5 (Q9SEX5) Ornithine carbamoyltransferase
(Ornithine carbamoyltransferase OOCT2) , partial (34%)
Length = 677
Score = 24.3 bits (51), Expect = 5.2
Identities = 11/34 (32%), Positives = 16/34 (46%)
Frame = -2
Query: 22 IATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNL 55
I H+V D +G +DF W +K + NL
Sbjct: 670 IIFSHVVCDGRGKIIDFSSRCWVNNKSHHMRINL 569
>TC13782 similar to UP|Q9ST97 (Q9ST97) Alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase , partial
(14%)
Length = 522
Score = 24.3 bits (51), Expect = 5.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 3 SSRVVLILSISMVLLSSVAIATDHIV 28
S R+ +SIS V+LSSV I H+V
Sbjct: 326 SKRIRQYVSISDVILSSV*ITQQHLV 249
>TC12447 weakly similar to GB|AAM63773.1|21555085|AY086719
phytocyanin-related protein-like {Arabidopsis thaliana;}
, partial (56%)
Length = 735
Score = 23.9 bits (50), Expect = 6.7
Identities = 20/60 (33%), Positives = 27/60 (44%), Gaps = 5/60 (8%)
Frame = +3
Query: 1 MASSRVVLILSISMVLLSSVAIATDHIVGDDK-GWTVDFD----YTQWAQDKVFRVGDNL 55
MA S L+L + LL + A + +VG W V QWA+ F+VGD L
Sbjct: 51 MAGSSASLLL---LFLLFGFSAAKELLVGGKTDAWKVPSSEADSLNQWAEKSRFKVGDYL 221
>TC10398 weakly similar to UP|Q9FII5 (Q9FII5) Receptor protein kinase-like
protein, partial (5%)
Length = 602
Score = 23.9 bits (50), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 16 LLSSVAIATDHIVGDDKG 33
LL SV + +DH+VG G
Sbjct: 296 LLDSVVVGSDHVVGSGGG 349
>TC14275 weakly similar to UP|Q9M510 (Q9M510) Dicyanin, partial (25%)
Length = 562
Score = 23.5 bits (49), Expect = 8.8
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 40 YTQWAQDKVFRVGDNL 55
Y WA K F+VGD L
Sbjct: 4 YRTWASGKTFKVGDIL 51
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 903,437
Number of Sequences: 28460
Number of extensions: 7657
Number of successful extensions: 51
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of query: 60
length of database: 4,897,600
effective HSP length: 36
effective length of query: 24
effective length of database: 3,873,040
effective search space: 92952960
effective search space used: 92952960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 49 (23.5 bits)
Medicago: description of AC126009.3