TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126009.2 + phase: 0 
         (184 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV417789                                                               40  2e-04
TC16950 similar to UP|RGP1_HUMAN (P46060) Ran GTPase-activating ...    28  0.72
TC20161 similar to UP|AAS07244 (AAS07244) Expressed protein, par...    28  1.2
TC12460 homologue to UP|CAE45595 (CAE45595) S-receptor kinase-li...    27  1.6
TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding l...    27  2.1
AV780744                                                               27  2.7
BP085186                                                               26  3.6
BI418471                                                               26  4.7
TC9175 weakly similar to UP|INAD_DROME (Q24008) Inactivation-no-...    25  6.1
BP073425                                                               25  8.0

>AV417789 
          Length = 331

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
 Frame = +1

Query: 8   NRSYEDFDPVFKWRREQDRDTIELHLPGN------------------GERPFDGTKWKRF 49
           +R YEDF+P  +  R++ R T+ L  PG                   GER   G +W+RF
Sbjct: 61  DRVYEDFEPYHESDRDEGRFTVML--PGYRRDQLKVQVTSKPALKLMGERLIVGNRWRRF 234

Query: 50  KKEFELPKYCNEDAIRGNFMQNILSVVLPKKV 81
             EF +P   + D +   F    LS+   K +
Sbjct: 235 SLEFPIPSEYDTDDVTATFEGGRLSIKFGKLI 330


>TC16950 similar to UP|RGP1_HUMAN (P46060) Ran GTPase-activating protein 1,
           partial (3%)
          Length = 643

 Score = 28.5 bits (62), Expect = 0.72
 Identities = 20/60 (33%), Positives = 30/60 (49%)
 Frame = +1

Query: 49  FKKEFELPKYCNEDAIRGNFMQNILSVVLPKKVDLIPQEEQEEEEKIPELEDLDKYQEKN 108
           F  E+E PK      I   F    +   LP  +   P+E++EEEEK  E E+ D  +E++
Sbjct: 223 FPIEWERPKPGRRPDIFPQFSP--MKTPLPPPIADPPEEDEEEEEKKEEEEEEDPDKEES 396


>TC20161 similar to UP|AAS07244 (AAS07244) Expressed protein, partial (10%)
          Length = 515

 Score = 27.7 bits (60), Expect = 1.2
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -2

Query: 48  RFKKEFELPKYCNEDAIRGNFMQNIL 73
           R K+EF L KYC  D +R    QN L
Sbjct: 226 RLKREFGLEKYCRLD*MRNLLYQNYL 149


>TC12460 homologue to UP|CAE45595 (CAE45595) S-receptor kinase-like protein
           2, partial (6%)
          Length = 862

 Score = 27.3 bits (59), Expect = 1.6
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 98  LEDLDKYQEKNTYKSLGFGGRDREEEIGTLSEYT 131
           L DL +  EK T + +GFGGRD   E   L+ ++
Sbjct: 447 LADLLR**EKETNRGMGFGGRDNITESTFLTHFS 548


>TC9118 similar to UP|Q84JE4 (Q84JE4) Squamosa promoter binding
           like-protein, partial (16%)
          Length = 779

 Score = 26.9 bits (58), Expect = 2.1
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 86  QEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREEE 123
           +EE+EEEEK  ++ D  + ++K+         RDR+ +
Sbjct: 32  EEEEEEEEKREDVRDHKRSRKKHRSHRSSHTSRDRDRD 145


>AV780744 
          Length = 489

 Score = 26.6 bits (57), Expect = 2.7
 Identities = 9/22 (40%), Positives = 15/22 (67%)
 Frame = +3

Query: 7   HNRSYEDFDPVFKWRREQDRDT 28
           HN+S +D   +  W+REQD ++
Sbjct: 162 HNQSNKDASQISHWKREQDTES 227


>BP085186 
          Length = 388

 Score = 26.2 bits (56), Expect = 3.6
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 86  QEEQEEEEKIPELEDLDKYQEKN 108
           +EE+EEEE+  E E+ +  +EKN
Sbjct: 244 EEEEEEEEEEEEEEEAEPEEEKN 176


>BI418471 
          Length = 574

 Score = 25.8 bits (55), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 49  FKKEFELPKYCNEDAIRGNFMQNILSVVLPKK 80
           F +  ELP+    D I+ +    +L+V++PK+
Sbjct: 329 FSRAIELPENVKVDQIKAHVENGVLTVLVPKE 424


>TC9175 weakly similar to UP|INAD_DROME (Q24008)
           Inactivation-no-after-potential D protein, partial (5%)
          Length = 692

 Score = 25.4 bits (54), Expect = 6.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 85  PQEEQEEEEKIPELEDLDKYQEKNTYKSLGFGGRDREE 122
           P+E++EEE+   E +  +  +EKN  K    G   +EE
Sbjct: 128 PEEKKEEEKAAEEAKKEEGGEEKNDNKEEKGGEEGKEE 241


>BP073425 
          Length = 392

 Score = 25.0 bits (53), Expect = 8.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 39  RPFDGTKWKRFKKEFELPKY 58
           RP  G  W+R+++ F+ P Y
Sbjct: 154 RPSRGVGWRRWRRRFQNPTY 95


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.316    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,745,275
Number of Sequences: 28460
Number of extensions: 33594
Number of successful extensions: 199
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of query: 184
length of database: 4,897,600
effective HSP length: 85
effective length of query: 99
effective length of database: 2,478,500
effective search space: 245371500
effective search space used: 245371500
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)