TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126008.14 + phase: 0 /pseudo/partial
         (731 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9561 weakly similar to UP|Q7X9J1 (Q7X9J1) Eugenol O-methyltran...    31  0.80
TC19378 weakly similar to UP|O80967 (O80967) At2g39140 protein, ...    28  1.3
TC20069 similar to UP|Q9LKZ4 (Q9LKZ4) Receptor-like protein kina...    29  3.1
TC8681 similar to UP|Q8GVB7 (Q8GVB7) Aux/IAA protein, partial (32%)    28  6.8
TC19443 similar to UP|AAS04935 (AAS04935) NarJ, partial (6%)           28  6.8
TC14435                                                                27  8.9

>TC9561 weakly similar to UP|Q7X9J1 (Q7X9J1) Eugenol O-methyltransferase,
           partial (34%)
          Length = 718

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -1

Query: 141 LQLIWYQARVLFRLRRIRCLHQSWV 165
           LQ  WYQ++V +RL+R   LHQ W+
Sbjct: 328 LQGCWYQSQVQYRLQRA*HLHQLWL 254


>TC19378 weakly similar to UP|O80967 (O80967) At2g39140 protein, partial
           (17%)
          Length = 466

 Score = 28.5 bits (62), Expect(2) = 1.3
 Identities = 13/31 (41%), Positives = 19/31 (60%)
 Frame = -3

Query: 441 RIRRNHLLCIVMLLRWVLVVCLCRIVRL*LM 471
           R RR H   I++LL  +L+ C CR+  L L+
Sbjct: 464 RRRRRHRTSIILLLTLLLLCCWCRLALLVLL 372



 Score = 20.0 bits (40), Expect(2) = 1.3
 Identities = 5/14 (35%), Positives = 9/14 (63%)
 Frame = -2

Query: 477 KCMRRIIRLMIWNW 490
           +C R  +R+ +W W
Sbjct: 249 RCRRYRVRVWVWVW 208


>TC20069 similar to UP|Q9LKZ4 (Q9LKZ4) Receptor-like protein kinase 3,
           partial (14%)
          Length = 517

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 602 QAIFWKRSRRVRRKIWNSWTE*RWLIKVKVE 632
           + + WKR RR RR+I+ SW    W+ K  VE
Sbjct: 112 ERVKWKRKRRSRRRIFASWF---WVWKKGVE 29


>TC8681 similar to UP|Q8GVB7 (Q8GVB7) Aux/IAA protein, partial (32%)
          Length = 732

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 333 CVPSCLSVSFG*RK*VSL--VM*FLRVVFLWILPRLMQCC 370
           C+PS LSV F  R  V++     FL  V+LWIL  + + C
Sbjct: 474 CLPSSLSVEFNWRDPVNIYTFWLFLCSVYLWILVAV*KIC 593


>TC19443 similar to UP|AAS04935 (AAS04935) NarJ, partial (6%)
          Length = 533

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 440 CRIRRNHLLCIVMLLRWVLVVCLC 463
           CR  R HLLC+ + LR V + C C
Sbjct: 266 CRSERAHLLCLTVFLR-VALPCFC 334


>TC14435 
          Length = 866

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (57%), Gaps = 3/31 (9%)
 Frame = +2

Query: 488 WNWQPLCI---H*RFGGIICMVLSLRCSVTT 515
           WNW+PLC    H*+   +I  +L L   +T+
Sbjct: 413 WNWKPLCTVM*H*KKSYVILDILHLMVQITS 505


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.376    0.169    0.715 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,033,179
Number of Sequences: 28460
Number of extensions: 309056
Number of successful extensions: 6005
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2491
Number of HSP's successfully gapped in prelim test: 249
Number of HSP's that attempted gapping in prelim test: 3299
Number of HSP's gapped (non-prelim): 3104
length of query: 731
length of database: 4,897,600
effective HSP length: 97
effective length of query: 634
effective length of database: 2,136,980
effective search space: 1354845320
effective search space used: 1354845320
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 59 (27.3 bits)