TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC126006.10 - phase: 0 /pseudo
         (352 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW720253                                                               28  2.3
BP041519                                                               28  3.0

>AW720253 
          Length = 481

 Score = 28.1 bits (61), Expect = 2.3
 Identities = 14/38 (36%), Positives = 18/38 (46%)
 Frame = +2

Query: 256 RRVYRHLPERVLRQYGYMQTIPRHPTDVVELPLPYIVQ 293
           RR   H P RVL +  +    PR P  V +   PY+ Q
Sbjct: 263 RRAQDHRPHRVLPRDRHRSLGPRRPLQVAQQAQPYLPQ 376


>BP041519 
          Length = 541

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 14/43 (32%), Positives = 22/43 (50%), Gaps = 7/43 (16%)
 Frame = -2

Query: 308 GVSRQESRHGGWLMAICYGTLGCLTL-------ILCHLSLEIF 343
           G+  ++ R G  L  +C+ T GCL L       ++ HL + IF
Sbjct: 162 GMEEKKPRFGCKLSCLCWTTFGCLKLGCWNLKGLISHLLISIF 34


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.143    0.453 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,943,580
Number of Sequences: 28460
Number of extensions: 101901
Number of successful extensions: 616
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of query: 352
length of database: 4,897,600
effective HSP length: 91
effective length of query: 261
effective length of database: 2,307,740
effective search space: 602320140
effective search space used: 602320140
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)