TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125481.7 + phase: 0 /pseudo
         (489 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP046554                                                               81  4e-16
TC8552                                                                 32  0.23
TC10143                                                                28  4.4
TC18350 similar to UP|O81911 (O81911) T7I23.17 protein, partial ...    27  5.8
TC8709 similar to UP|O49929 (O49929) Pore protein of 24 kDa (OEP...    27  7.5
TC15924 weakly similar to GB|BAC21577.1|24060129|AP005438 G-prot...    27  7.5
BI421028                                                               27  7.5
CB827448                                                               27  9.8

>BP046554 
          Length = 556

 Score = 80.9 bits (198), Expect = 4e-16
 Identities = 45/103 (43%), Positives = 62/103 (59%), Gaps = 6/103 (5%)
 Frame = -3

Query: 49  EAMDMGETDASNVGQKI------VLQPSFAGGRHYMFNNCQDAMSICKKYGYPDLFVTIA 102
           EA+D GET+ S+VG ++      ++  +       M   C     I KK+GYPDLF+T  
Sbjct: 389 EAIDKGETNPSSVGSELFCPHLLLVDIAICSIISRMQWPC-----IFKKFGYPDLFITFT 225

Query: 103 CNTNWREIQDFLKERNLKASDRPDIVCRVFKMKLDKLMDDFEK 145
           CN+ W EIQ F++ RNL   D P+I  RVFKMKLD+L+ D +K
Sbjct: 224 CNSAWCEIQRFVQPRNLNVEDCPNICVRVFKMKLDRLISDLKK 96


>TC8552 
          Length = 535

 Score = 32.0 bits (71), Expect = 0.23
 Identities = 17/39 (43%), Positives = 22/39 (55%)
 Frame = +2

Query: 282 CRYVSPCEAVWRIFAFDIHHK*PHVLKLLFHLHNEQGNI 320
           C Y SP E  W+I+ F +     HVLKL+F+   E  NI
Sbjct: 374 CDYSSPFEF*WQIYLFHV-----HVLKLVFNTWQESLNI 475


>TC10143 
          Length = 251

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -1

Query: 17  SVDCYTMIESQRLRYIRKNQKTIRCGILNGLHEAMD 52
           S+ C+     +R R ++KN+K+ + G+LNG  E MD
Sbjct: 194 SLVCFRGQNQERERKLKKNEKSKKKGLLNG-KEGMD 90


>TC18350 similar to UP|O81911 (O81911) T7I23.17 protein, partial (44%)
          Length = 628

 Score = 27.3 bits (59), Expect = 5.8
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 226 RYGGHVNVECCNKSNSIKYLFKYVNKVPDKALMQLSVDGDNRDKSKP 272
           RY  H    C N +  +KYL     K P+ +++ L+ + D R    P
Sbjct: 322 RYSRHELKGCINDAKCMKYLLINKVKFPEPSIIMLTEEEDPRGPKFP 462


>TC8709 similar to UP|O49929 (O49929) Pore protein of 24 kDa (OEP24),
           complete
          Length = 997

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 17/52 (32%), Positives = 24/52 (45%), Gaps = 1/52 (1%)
 Frame = +2

Query: 169 MDRGRCTKYYRKNYKGTTTIDEGYPRYKRR-DFGIHVDKQRVLLDNRYVVPY 219
           +D G C   YR  +KG TT +  Y   K   DF +    +RV  D+ +   Y
Sbjct: 422 LDSGNCRLKYRYVHKGLTTFEPSYDVAKNTWDFAV---SRRVYGDDSFGASY 568


>TC15924 weakly similar to GB|BAC21577.1|24060129|AP005438 G-protein beta
           family-like protein {Oryza sativa (japonica
           cultivar-group);}, partial (11%)
          Length = 1262

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 10/18 (55%), Positives = 13/18 (71%)
 Frame = +1

Query: 267 RDKSKPVDEIKQYYDCRY 284
           R +SKP++ IK Y DC Y
Sbjct: 574 RKQSKPINSIKAYRDCLY 627


>BI421028 
          Length = 607

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 15/53 (28%), Positives = 24/53 (44%)
 Frame = +3

Query: 138 KLMDDFEKEECLAKLMQRHVPCGGARPFSPCMDRGRCTKYYRKNYKGTTTIDE 190
           KL++  EKE  +  L +R V CG          +  C  + +K  +   T+DE
Sbjct: 207 KLIESGEKERLMELLRERLVDCGWKDEM-----KAICRDFVKKKGRNNVTVDE 350


>CB827448 
          Length = 549

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
 Frame = +3

Query: 127 IVCRVFKMKLDKLMDDFEKEECLAKLMQRHVPCGG-----ARPFSPCMDRGRCTKYYRK 180
           +VC+  K  +   ++ FEKEE  A L +               F+ C+  G    Y+RK
Sbjct: 309 LVCQAQKASMAAAVEVFEKEELAASLAKYVADLSNKFTAERGAFTVCLSGGSLISYFRK 485


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.342    0.150    0.514 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,727,641
Number of Sequences: 28460
Number of extensions: 121238
Number of successful extensions: 741
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of query: 489
length of database: 4,897,600
effective HSP length: 94
effective length of query: 395
effective length of database: 2,222,360
effective search space: 877832200
effective search space used: 877832200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 57 (26.6 bits)