TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125480.3 + phase: 0 
         (476 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14228 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (67%)         627  e-180
TC14227 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (53%)         482  e-137
TC15379 UP|Q9ZPL8 (Q9ZPL8) Protein phosphatase type 2C, complete       29  1.9
TC13856                                                                28  4.3
TC15308 similar to UP|Q41725 (Q41725) TED3, partial (16%)              28  4.3
AV425570                                                               28  4.3
BP046346                                                               27  5.6
AV423085                                                               27  9.5

>TC14228 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (67%)
          Length = 1268

 Score =  627 bits (1616), Expect = e-180
 Identities = 316/322 (98%), Positives = 320/322 (99%)
 Frame = +2

Query: 155 IVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEG 214
           ++QL FAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEG
Sbjct: 77  LLQLCFAGIIVICLDELLQKGYGLGSGISLFIATNICENIIWKAFSPTTINSGRGAEFEG 256

Query: 215 AVIALFHLLITRTDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKN 274
           AVIALFHLLITR+DKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKN
Sbjct: 257 AVIALFHLLITRSDKVRALREAFYRQNLPNVTNLLATVLIFLIVIYFQGFRVVLPVRSKN 436

Query: 275 ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFIVNLLGKWKESEYGG 334
           ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNF VNLLGKWK+SEYGG
Sbjct: 437 ARGQQGSYPIKLFYTSNMPIILQSALVSNLYFISQLLHRKYSGNFFVNLLGKWKDSEYGG 616

Query: 335 GHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAK 394
           GHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAK
Sbjct: 617 GHSIPVGGIAYYITAPSSLADMAANPFHALFYLVFMLSACALFSKTWIEVSGSSARDVAK 796

Query: 395 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVT 454
           QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVT
Sbjct: 797 QLKEQQMVMPGHRESNLQKELNRYIPTAAAFGGICIGALTVLADFMGAIGSGTGILLAVT 976

Query: 455 IIYQYFETFEKERASELGFFGF 476
           IIYQYFETFEKERASELGFFGF
Sbjct: 977 IIYQYFETFEKERASELGFFGF 1042



 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 26/42 (61%), Positives = 31/42 (72%), Gaps = 6/42 (14%)
 Frame = -1

Query: 138 GMYGSVGQL------GVGNAILIIVQLFFAGIIVICLDELLQ 173
           G + ++ QL      GVGNAILII+QL FAGIIVICL EL+Q
Sbjct: 128 GAHPNISQLYQQNTAGVGNAILIILQLCFAGIIVICLKELIQ 3


>TC14227 homologue to UP|Q9LLR4 (Q9LLR4) Sec61p, partial (53%)
          Length = 880

 Score =  482 bits (1240), Expect = e-137
 Identities = 247/250 (98%), Positives = 249/250 (98%)
 Frame = +2

Query: 1   MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 60
           MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG
Sbjct: 131 MGGGFRVLHLVRPFLSFLPEVQTADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTG 310

Query: 61  ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 120
           ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK
Sbjct: 311 ADPFYWMRVILASNRGTVMELGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQK 490

Query: 121 LLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIVQLFFAGIIVICLDELLQKGYGLGS 180
           LLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILII+QL FAGIIVICLDELLQKGYGLGS
Sbjct: 491 LLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIILQLCFAGIIVICLDELLQKGYGLGS 670

Query: 181 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVRALREAFYRQ 240
           GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITR+DKVRALREAFYRQ
Sbjct: 671 GISLFIATNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRSDKVRALREAFYRQ 850

Query: 241 NLPNVTNLLA 250
           NLPNVTNLLA
Sbjct: 851 NLPNVTNLLA 880


>TC15379 UP|Q9ZPL8 (Q9ZPL8) Protein phosphatase type 2C, complete
          Length = 1338

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +1

Query: 350 PSSLADMAANPFHALFYLVFMLSAC--ALFSKTWIEVSGSSARDVAKQLKEQ 399
           PS    ++ NPFH LF+L+ +       LF    I+V   + R++  ++KE+
Sbjct: 106 PSQHTRLSLNPFHFLFFLLSLSLHLLHTLF*ILQIQVQAMTGREILHKMKEK 261


>TC13856 
          Length = 570

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 14/38 (36%), Positives = 18/38 (46%)
 Frame = -1

Query: 377 FSKTWIEVSGSSARDVAKQLKEQQMVMPGHRESNLQKE 414
           F K W+     S + +A+QLK   MV P H     Q E
Sbjct: 231 FKKAWLSHKVYSLKTIARQLKRLCMVWPPHSGDLKQPE 118


>TC15308 similar to UP|Q41725 (Q41725) TED3, partial (16%)
          Length = 1103

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 26/114 (22%), Positives = 52/114 (44%), Gaps = 3/114 (2%)
 Frame = -1

Query: 121 LLGILIAVGEAVAYVLSGMYGSVGQLGVGNAILIIVQLFFAGIIVICLDELLQKGYGLGS 180
           L+ I+IA+   +  V+  +           AI++I  + F+ ++V C+  ++     +G 
Sbjct: 581 LIAIIIAIIVVIVVVVKFL-----------AIVVIAPVPFS-VVVFCVHFIVVVAAEIGL 438

Query: 181 GISLFIA---TNICENIIWKAFSPTTINSGRGAEFEGAVIALFHLLITRTDKVR 231
           GIS F+A     + E +I+K  S  +   GR       + A+  + ++   K R
Sbjct: 437 GISCFVALVFEVLIEKLIFKVCSGGSFLGGRILSRTRRICAI*AITLSHVKKFR 276


>AV425570 
          Length = 420

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 33/116 (28%), Positives = 48/116 (40%), Gaps = 6/116 (5%)
 Frame = +1

Query: 81  LGITPIVTSGLVMQLLAGSKIIEVDNNVREDRALLNGAQKLL------GILIAVGEAVAY 134
           LGI P + + +V QLLA       D   RE  A   G +K+L       +  A+ +A+  
Sbjct: 61  LGIVPFINAQIVFQLLAQVYPKLQDLQKREGEA---GRKKILQYTRYASVGFAIVQAIGQ 231

Query: 135 VLSGMYGSVGQLGVGNAILIIVQLFFAGIIVICLDELLQKGYGLGSGISLFIATNI 190
           VL  +   V        I  ++ L         + E +     LG+G SL I TNI
Sbjct: 232 VLF-LRPYVNDFSTEWVISSVILLTLGSAFTTYIGERI-TDLKLGNGTSLLIFTNI 393


>BP046346 
          Length = 476

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 15/43 (34%), Positives = 23/43 (52%)
 Frame = +1

Query: 24  ADRKVPFREKVIYTVISLFIFLVCSQLPLYGIHSTTGADPFYW 66
           A R +P ++KVIY  I   I  +  ++ + G HST   D  +W
Sbjct: 280 AQRALP-KKKVIYDFIVNKILRLVQEISIQGAHSTDKQDIGFW 405


>AV423085 
          Length = 411

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 171 LLQKGYGLGSGISLFIATNICENI 194
           L QK Y LGS +SLF  +N+  N+
Sbjct: 127 LAQKAYSLGSFLSLFGRSNLVANL 56


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.326    0.143    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,298,137
Number of Sequences: 28460
Number of extensions: 96252
Number of successful extensions: 654
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of query: 476
length of database: 4,897,600
effective HSP length: 94
effective length of query: 382
effective length of database: 2,222,360
effective search space: 848941520
effective search space used: 848941520
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)