BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125479.4 - phase: 0
(110 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17213 similar to UP|AAS48064 (AAS48064) NIP2, partial (30%) 104 2e-24
AV422786 103 3e-24
TC8121 UP|Q9LKJ5 (Q9LKJ5) Multifunctional transport intrinsic me... 99 1e-22
TC7912 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic p... 71 3e-14
TC9630 similar to UP|AAS48063 (AAS48063) NIP3, partial (18%) 69 2e-13
TC7911 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic p... 67 4e-13
TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic me... 58 3e-10
TC7806 homologue to UP|Q946J9 (Q946J9) Aquaporin protein PIP1,1,... 51 3e-08
CN825371 49 9e-08
TC7816 homologue to UP|Q9ATM4 (Q9ATM4) Plasma membrane integral ... 48 3e-07
TC14565 homologue to UP|O65741 (O65741) Transmembrane channel pr... 47 5e-07
TC8724 homologue to UP|Q9AQU5 (Q9AQU5) Plasma membrane integral ... 46 8e-07
TC7924 homologue to UP|CAE53883 (CAE53883) Aquaporin, partial (95%) 44 4e-06
BP076640 44 5e-06
TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2... 43 7e-06
TC14286 homologue to UP|O65357 (O65357) Aquaporin 2, complete 43 7e-06
TC7815 similar to UP|Q9AVB5 (Q9AVB5) Plasma membrane intrinsic p... 42 1e-05
AV765067 42 2e-05
AV769475 38 2e-04
TC12994 similar to UP|Q9ATM2 (Q9ATM2) Small basic membrane integ... 36 8e-04
>TC17213 similar to UP|AAS48064 (AAS48064) NIP2, partial (30%)
Length = 578
Score = 104 bits (260), Expect = 2e-24
Identities = 45/81 (55%), Positives = 65/81 (79%)
Frame = +3
Query: 6 TAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGIWIYMV 65
+ V+TD++A GE+AG+A+G+++ + I+AGPI+G SMNPAR+LGPAI S YKGIWIY+V
Sbjct: 6 SGVSTDNRAIGEMAGLAIGATILLNVIIAGPITGASMNPARSLGPAIVHSEYKGIWIYLV 185
Query: 66 GPITGALLGAWSYVVIQETDH 86
P+ GA+ G WSY I+ T++
Sbjct: 186SPVLGAVAGTWSYNFIRYTNY 248
>AV422786
Length = 427
Score = 103 bits (258), Expect = 3e-24
Identities = 48/80 (60%), Positives = 62/80 (77%)
Frame = -3
Query: 6 TAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGIWIYMV 65
TAVATDS+A GELAG+AVG++V + +++GP SGGSMNP RTLGPA+A +YK IWIY+V
Sbjct: 422 TAVATDSRAVGELAGIAVGATVLLNILISGPTSGGSMNPVRTLGPAVAAGNYKHIWIYLV 243
Query: 66 GPITGALLGAWSYVVIQETD 85
P GAL GA Y +++ D
Sbjct: 242 APTLGALAGAGVYTLVKLRD 183
>TC8121 UP|Q9LKJ5 (Q9LKJ5) Multifunctional transport intrinsic membrane
protein 2, complete
Length = 1213
Score = 99.0 bits (245), Expect = 1e-22
Identities = 43/85 (50%), Positives = 62/85 (72%)
Frame = +2
Query: 1 MVFISTAVATDSKATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI 60
++FI VATD +A GE+AG+ VGS+V + + AGPI+G SMNPAR++G A + Y+GI
Sbjct: 599 LIFILFGVATDDRAIGEVAGIVVGSTVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGI 778
Query: 61 WIYMVGPITGALLGAWSYVVIQETD 85
WIY++ P GA+ GAW Y +++ TD
Sbjct: 779 WIYLLSPTLGAVAGAWVYNIVRYTD 853
Score = 27.3 bits (59), Expect = 0.39
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +2
Query: 18 LAGVAV--GSSVTIASIVAGPISGGSMNPARTLGPAIATS-SYKGIWIYMVGPITGALLG 74
L G+A+ G +V + G ISG NPA T+ A +K + Y+ + G+ L
Sbjct: 308 LPGIALVWGLAVMVLVYSLGHISGAHFNPAATIAFASTKRFPWKQVPAYVSAQVLGSTLA 487
Query: 75 AWSYVVIQETDHKQ 88
+ + +I H Q
Sbjct: 488 SGTLRLIFSGKHNQ 529
>TC7912 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic protein,
partial (95%)
Length = 1045
Score = 70.9 bits (172), Expect = 3e-14
Identities = 38/90 (42%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Frame = +2
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ + ++
Sbjct: 485 LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFH 664
Query: 59 GIWIYMVGPITGALLGAWSY--VVIQETDH 86
IWIY VGP+ G L Y V I+ +H
Sbjct: 665 DIWIYWVGPLIGGGLAGLIYGNVFIRSHEH 754
Score = 25.8 bits (55), Expect = 1.1
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +2
Query: 29 IASIVAGPISGGSMNPARTLGPAIA--TSSYKGIWIYMVGPITGALLGAW 76
+A V ISGG +NPA T G A+ + GI+ Y + + G+++ +
Sbjct: 233 VAVSVGANISGGHVNPAVTFGLALGGQITILTGIF-YWIAQLLGSIVACF 379
>TC9630 similar to UP|AAS48063 (AAS48063) NIP3, partial (18%)
Length = 971
Score = 68.6 bits (166), Expect = 2e-13
Identities = 30/56 (53%), Positives = 39/56 (69%)
Frame = +3
Query: 36 PISGGSMNPARTLGPAIATSSYKGIWIYMVGPITGALLGAWSYVVIQETDHKQDLA 91
P +G SMNP RTLGPAIA ++YK IW+Y+V P+ GAL GA Y ++ D +D A
Sbjct: 192 PETGASMNPVRTLGPAIAANNYKAIWVYLVAPVLGALSGAGIYTAVKLPDEDEDSA 359
>TC7911 similar to UP|Q39800 (Q39800) Delta-tonoplast intrinsic protein,
complete
Length = 1018
Score = 67.0 bits (162), Expect = 4e-13
Identities = 34/83 (40%), Positives = 47/83 (55%), Gaps = 2/83 (2%)
Frame = +1
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V + AGP SGGSMNPAR+ GPA+ + +
Sbjct: 508 LVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFH 687
Query: 59 GIWIYMVGPITGALLGAWSYVVI 81
WIY VGP+ G L Y +
Sbjct: 688 DNWIYWVGPLIGGGLAGVIYTYV 756
Score = 25.0 bits (53), Expect = 1.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 29 IASIVAGPISGGSMNPARTLGPAI 52
+A V ISGG +NPA T G A+
Sbjct: 262 VAVSVGANISGGHVNPAVTFGLAL 333
>TC7812 UP|Q9LKJ6 (Q9LKJ6) Water-selective transport intrinsic membrane
protein 1, complete
Length = 1149
Score = 57.8 bits (138), Expect = 3e-10
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Frame = +3
Query: 1 MVFISTAVATDSK--ATGELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK 58
+V+ A A D K + G +A +A+G V ++ G G SMNPA + GPA+ + S+
Sbjct: 534 LVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILLGGAFDGASMNPAVSFGPAVVSWSWS 713
Query: 59 GIWIYMVGPITGALLGAWSYVVI 81
WIY VGP+ G + Y V+
Sbjct: 714 NHWIYWVGPLVGGGIAGLIYEVV 782
Score = 30.0 bits (66), Expect = 0.060
Identities = 17/59 (28%), Positives = 34/59 (56%), Gaps = 2/59 (3%)
Frame = +3
Query: 19 AGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIA--TSSYKGIWIYMVGPITGALLGA 75
A +A ++ +A ++ ISGG +NPA T G + S +G+ IY++ + G+++ +
Sbjct: 255 ASIAHAFALFVAVSISANISGGHVNPAVTFGLFVGGNISFLRGV-IYIIAQLLGSIVAS 428
>TC7806 homologue to UP|Q946J9 (Q946J9) Aquaporin protein PIP1,1, complete
Length = 1413
Score = 50.8 bits (120), Expect = 3e-08
Identities = 31/82 (37%), Positives = 46/82 (55%), Gaps = 9/82 (10%)
Frame = +3
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI-- 60
ATD+K + LA + +G +V + + PI+G +NPAR+LG AI + +G
Sbjct: 663 ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKDRGWDD 842
Query: 61 -WIYMVGPITGALLGAWSYVVI 81
WI+ VGP GA L A +VV+
Sbjct: 843 HWIFWVGPFIGAALAAIYHVVV 908
Score = 27.7 bits (60), Expect = 0.30
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +3
Query: 11 DSKA-TGELAGVAVGSSVTIASIV--AGPISGGSMNPARTLGPAIATS-SYKGIWIYMVG 66
DSK T + G+A I ++V ISGG +NPA T G +A S Y+V
Sbjct: 312 DSKCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYIVM 491
Query: 67 PITGALLGA 75
GA++GA
Sbjct: 492 QCLGAIVGA 518
>CN825371
Length = 483
Score = 49.3 bits (116), Expect = 9e-08
Identities = 25/68 (36%), Positives = 37/68 (53%), Gaps = 2/68 (2%)
Frame = +1
Query: 16 GELAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGIWIYMVGPITGALLGA 75
G +A +A+G V +V GP G MNPA GP++ + W++ +GP GA L A
Sbjct: 19 GAIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLVGWRWHYHWVFWLGPFLGAALAA 198
Query: 76 --WSYVVI 81
+ Y+VI
Sbjct: 199LIYEYLVI 222
>TC7816 homologue to UP|Q9ATM4 (Q9ATM4) Plasma membrane integral protein
ZmPIP2-7, complete
Length = 1523
Score = 47.8 bits (112), Expect = 3e-07
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Frame = +1
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK---G 59
ATD K LA + +G +V + + P++G +NPAR+ GPA+ + K
Sbjct: 739 ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGPAVIFNEDKVWDD 918
Query: 60 IWIYMVGPITGALLGA 75
W+Y VGP GAL+ A
Sbjct: 919 QWVYWVGPFVGALVAA 966
Score = 28.5 bits (62), Expect = 0.17
Identities = 17/55 (30%), Positives = 25/55 (44%), Gaps = 1/55 (1%)
Frame = +1
Query: 22 AVGSSVTIASIVAGPISGGSMNPARTLGPAIATS-SYKGIWIYMVGPITGALLGA 75
A G + + ISGG +NPA T G + S +Y++ GA+ GA
Sbjct: 433 AFGGMIFVLVYCTAGISGGHINPAVTFGLFVGRKVSLVRALLYIIAQCLGAICGA 597
>TC14565 homologue to UP|O65741 (O65741) Transmembrane channel protein
(Fragment), partial (86%)
Length = 539
Score = 47.0 bits (110), Expect = 5e-07
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Frame = +2
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI-- 60
ATD+K + LA + +G +V + + PI+G +NPAR+LG +I + G
Sbjct: 29 ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGASIVFNKDLGWDD 208
Query: 61 -WIYMVGPITGALLGA-WSYVVIQETDHKQDLATSQSPLSVKIH 102
WI+ VGP GA L A + VVI+ K +Q+ + K H
Sbjct: 209 HWIFWVGPFIGAALAALYHQVVIRAIPFKSS*LINQAKFN-KFH 337
>TC8724 homologue to UP|Q9AQU5 (Q9AQU5) Plasma membrane integral protein
ZmPIP1-4 (Plasma membrane integral protein ZmPIP1-3),
partial (93%)
Length = 1560
Score = 46.2 bits (108), Expect = 8e-07
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Frame = +1
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATS---SYKG 59
ATD+K LA + +G +V + + PI+G +NPAR+LG AI + ++
Sbjct: 673 ATDAKRNARDSHVPLLAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWDD 852
Query: 60 IWIYMVGPITGALLGAWSYVVI 81
WI+ VGP GA L A + ++
Sbjct: 853 HWIFWVGPFIGAALAAVYHQIV 918
Score = 26.9 bits (58), Expect = 0.50
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 22 AVGSSVTIASIVAGPISGGSMNPARTLGPAIATS-SYKGIWIYMVGPITGALLGA 75
A G + ISGG +NPA T G +A S Y+V GA+ GA
Sbjct: 364 AFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQCLGAICGA 528
>TC7924 homologue to UP|CAE53883 (CAE53883) Aquaporin, partial (95%)
Length = 1078
Score = 43.9 bits (102), Expect = 4e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Frame = +2
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK---G 59
ATD K + LA + +G +V + + PI+G +NPAR+ G A+ ++ K
Sbjct: 554 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNGKVWDD 733
Query: 60 IWIYMVGPITGALLGA 75
WI+ VGP GAL A
Sbjct: 734 QWIFWVGPFVGALAAA 781
Score = 32.3 bits (72), Expect = 0.012
Identities = 27/85 (31%), Positives = 37/85 (42%), Gaps = 11/85 (12%)
Frame = +2
Query: 1 MVFISTAVAT---DSKATGELAGVAV-------GSSVTIASIVAGPISGGSMNPARTLGP 50
++F+ VAT K TG GV + G + + ISGG +NPA T G
Sbjct: 155 LLFLYVTVATVIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGL 334
Query: 51 AIATS-SYKGIWIYMVGPITGALLG 74
+A S +YMV GA+ G
Sbjct: 335 FLARKVSLIRAVLYMVAQCLGAICG 409
>BP076640
Length = 542
Score = 43.5 bits (101), Expect = 5e-06
Identities = 23/49 (46%), Positives = 31/49 (62%), Gaps = 3/49 (6%)
Frame = -2
Query: 36 PISGGSMNPARTLGPAIATSSYKGI---WIYMVGPITGALLGAWSYVVI 81
PI+G +NPAR+LG AI + +G WI+ VGP GA L A +VV+
Sbjct: 535 PITGTGINPARSLGAAIIFNKDRGWDDHWIFWVGPFIGAALAAIYHVVV 389
>TC14103 similar to UP|Q84XC6 (Q84XC6) Plasma intrinsic protein 2,2, partial
(94%)
Length = 1199
Score = 43.1 bits (100), Expect = 7e-06
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Frame = +3
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGI-- 60
ATD K LA + +G +V + + PI+G +NPAR+ G A+ ++ K
Sbjct: 651 ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDD 830
Query: 61 -WIYMVGPITGALLGA 75
WI+ VGP GA + A
Sbjct: 831 QWIFWVGPFIGATIAA 878
Score = 29.3 bits (64), Expect = 0.10
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +3
Query: 22 AVGSSVTIASIVAGPISGGSMNPARTLGPAIATS-SYKGIWIYMVGPITGALLG 74
A G + I ISGG +NPA T G +A S YMV GA+ G
Sbjct: 345 AFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALFYMVAQCLGAISG 506
>TC14286 homologue to UP|O65357 (O65357) Aquaporin 2, complete
Length = 1278
Score = 43.1 bits (100), Expect = 7e-06
Identities = 26/82 (31%), Positives = 42/82 (50%), Gaps = 9/82 (10%)
Frame = +1
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK---G 59
ATD K + LA + +G +V + + P++G +NPAR+ G A+ + K
Sbjct: 667 ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIFNQSKPWDD 846
Query: 60 IWIYMVGPITGALLGAWSYVVI 81
WI+ VGP GA + A+ + I
Sbjct: 847 HWIFWVGPFIGAAIAAFYHQFI 912
Score = 30.8 bits (68), Expect = 0.035
Identities = 22/69 (31%), Positives = 32/69 (45%), Gaps = 2/69 (2%)
Frame = +1
Query: 22 AVGSSVTIASIVAGPISGGSMNPARTLGPAIA--TSSYKGIWIYMVGPITGALLGAWSYV 79
A G + I ISGG +NPA T G +A S + I +YMV GA+ G
Sbjct: 361 AFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAI-LYMVAQCLGAICGVGLVK 537
Query: 80 VIQETDHKQ 88
Q++ + +
Sbjct: 538 AFQKSHYNK 564
>TC7815 similar to UP|Q9AVB5 (Q9AVB5) Plasma membrane intrinsic protein
2-1, complete
Length = 1450
Score = 42.4 bits (98), Expect = 1e-05
Identities = 26/76 (34%), Positives = 38/76 (49%), Gaps = 9/76 (11%)
Frame = +1
Query: 9 ATDSKATGE------LAGVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYK---G 59
ATD K LA + +G +V + + P++G +NPAR+ G A+ + K
Sbjct: 613 ATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSFGAAVIYNEDKIWDD 792
Query: 60 IWIYMVGPITGALLGA 75
WI+ VGP GAL A
Sbjct: 793 HWIFWVGPFIGALAAA 840
Score = 27.3 bits (59), Expect = 0.39
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 22 AVGSSVTIASIVAGPISGGSMNPARTLGPAIATS-SYKGIWIYMVGPITGALLG 74
A G + I ISGG +NPA T G I S +Y+V GA+ G
Sbjct: 307 AFGGMIFILVYCTAGISGGHINPAVTFGLFIGRKVSLIRALLYIVAQCLGAISG 468
>AV765067
Length = 329
Score = 42.0 bits (97), Expect = 2e-05
Identities = 20/62 (32%), Positives = 33/62 (52%)
Frame = -1
Query: 20 GVAVGSSVTIASIVAGPISGGSMNPARTLGPAIATSSYKGIWIYMVGPITGALLGAWSYV 79
G VG+++ ++ G S+NP + GPA+ + S+ WIY VGP+ G + Y
Sbjct: 329 GFIVGANI----LLGGAFDEASINPPVSFGPAVVS*SWSNPWIYWVGPLVGGGIAGLIYK 162
Query: 80 VI 81
V+
Sbjct: 161 VV 156
>AV769475
Length = 325
Score = 38.1 bits (87), Expect = 2e-04
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -2
Query: 46 RTLGPAIATSSYKGIWIYMVGPITGALLGAWSY 78
R+ GPA+ + +Y IWIY VGP+ G L Y
Sbjct: 324 RSFGPAVVSGNYVDIWIYWVGPLIGGALAGLVY 226
>TC12994 similar to UP|Q9ATM2 (Q9ATM2) Small basic membrane integral protein
ZmSIP1-2, partial (42%)
Length = 535
Score = 36.2 bits (82), Expect = 8e-04
Identities = 20/60 (33%), Positives = 33/60 (54%), Gaps = 3/60 (5%)
Frame = +3
Query: 25 SSVTIASIVAGPISGGSMNPARTLGPAIATS---SYKGIWIYMVGPITGALLGAWSYVVI 81
S+VT+ +V +G +MNPA G A + ++ ++Y + P TGA+L AW + I
Sbjct: 96 STVTLV-MVGSAYTGPAMNPANAFGWAYLNNIHNTWDQFYVYWICPFTGAILAAWLFRAI 272
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,491,432
Number of Sequences: 28460
Number of extensions: 15821
Number of successful extensions: 123
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of query: 110
length of database: 4,897,600
effective HSP length: 86
effective length of query: 24
effective length of database: 2,450,040
effective search space: 58800960
effective search space used: 58800960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)
Medicago: description of AC125479.4