BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125479.3 - phase: 0
(68 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11153 similar to UP|Q9FJJ6 (Q9FJJ6) Genomic DNA, chromosome 5,... 42 3e-05
TC11890 similar to PIR|A86347|A86347 branched-chain alpha keto-a... 27 0.57
TC14327 similar to GB|AAL15354.1|16323240|AY057724 AT5g14920/F2G... 26 1.7
AV774371 25 2.2
TC16840 homologue to UP|Q9SHZ4 (Q9SHZ4) At2g22120 protein, parti... 25 3.7
TC10012 weakly similar to UP|EXR1_ARATH (O23547) Expansin-relate... 25 3.7
TC15706 weakly similar to UP|P93408 (P93408) Mitochondrial ribos... 24 4.9
BP053381 24 6.3
AV409645 24 6.3
TC11790 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protei... 23 8.3
TC14575 similar to UP|AAQ84334 (AAQ84334) Zinc-finger protein, p... 23 8.3
>TC11153 similar to UP|Q9FJJ6 (Q9FJJ6) Genomic DNA, chromosome 5, TAC
clone:K19B1 (AT5g62460/K19B1_7), partial (17%)
Length = 451
Score = 41.6 bits (96), Expect = 3e-05
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +1
Query: 31 KMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+M ECR C EE+ + LE PC C GSLK
Sbjct: 295 QMAECRICQEEDQVSNLETPCACSGSLK 378
>TC11890 similar to PIR|A86347|A86347 branched-chain alpha keto-acid
dehydrogenase E1-alpha subunit [imported]
- Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(32%)
Length = 621
Score = 27.3 bits (59), Expect = 0.57
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Frame = +2
Query: 24 REQLVIGKMGECRYCHEEEWIYRLEAPCR------CDGSLKVFQFYLKH 66
R + + +M CRYCH E Y E+ C+ C + +FQ +L H
Sbjct: 434 RTRKITLQMFLCRYCHSNE--YCTESDCKSGKWIGCSCGI*LFQCFLCH 574
>TC14327 similar to GB|AAL15354.1|16323240|AY057724 AT5g14920/F2G14_40
{Arabidopsis thaliana;}, partial (22%)
Length = 1038
Score = 25.8 bits (55), Expect = 1.7
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = -1
Query: 29 IGKMGECRYCHE 40
+G MG C YCHE
Sbjct: 381 LGSMGTCTYCHE 346
>AV774371
Length = 492
Score = 25.4 bits (54), Expect = 2.2
Identities = 12/28 (42%), Positives = 13/28 (45%), Gaps = 2/28 (7%)
Frame = +3
Query: 30 GKMGECRYCHEEEW--IYRLEAPCRCDG 55
GK C YCH E W I R + C G
Sbjct: 228 GKKVRCNYCHSEFWGGINRFKLHLGCYG 311
>TC16840 homologue to UP|Q9SHZ4 (Q9SHZ4) At2g22120 protein, partial (39%)
Length = 576
Score = 24.6 bits (52), Expect = 3.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +3
Query: 14 IPIEELSAALREQLVIG--KMGECRYCHEEEWIYRLEAPCRCDGSLK 58
+P + LS A L G + +CR C E + + APC+C G+ K
Sbjct: 201 VPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFI-APCKCKGTSK 338
>TC10012 weakly similar to UP|EXR1_ARATH (O23547) Expansin-related protein 1
precursor (At-EXPR1) (Ath-ExpBeta-3.1), partial (66%)
Length = 687
Score = 24.6 bits (52), Expect = 3.7
Identities = 7/18 (38%), Positives = 10/18 (54%)
Frame = +1
Query: 36 RYCHEEEWIYRLEAPCRC 53
R C E W+++ CRC
Sbjct: 391 RLCDESTWLFKTGKKCRC 444
>TC15706 weakly similar to UP|P93408 (P93408) Mitochondrial ribosomal
protein S11 (Nuclear encoded), partial (31%)
Length = 600
Score = 24.3 bits (51), Expect = 4.9
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +1
Query: 38 CHEEEWIYRL 47
CHE EW+Y L
Sbjct: 139 CHESEWVYSL 168
>BP053381
Length = 524
Score = 23.9 bits (50), Expect = 6.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 30 GKMGECRYCHEEEWIYRL 47
G++G C Y H +E +Y L
Sbjct: 454 GEIGRCSYYHYQESLYHL 507
>AV409645
Length = 414
Score = 23.9 bits (50), Expect = 6.3
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = -2
Query: 33 GECRYCHEEEW 43
G C CH+EEW
Sbjct: 263 GSCCCCHDEEW 231
>TC11790 homologue to UP|AAK62367 (AAK62367) 40S ribosomal protein S15A,
complete
Length = 474
Score = 23.5 bits (49), Expect = 8.3
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 17 EELSAALREQLVIGKMGECRYCHEEEWIYRLEAPC 51
E A+ +Q ++ + Y H E W+YR C
Sbjct: 138 ETWQASGHDQAILQGHHQVPYSHAEAWLYRRVRVC 242
>TC14575 similar to UP|AAQ84334 (AAQ84334) Zinc-finger protein, partial
(71%)
Length = 1080
Score = 23.5 bits (49), Expect = 8.3
Identities = 12/34 (35%), Positives = 17/34 (49%)
Frame = +2
Query: 29 IGKMGECRYCHEEEWIYRLEAPCRCDGSLKVFQF 62
+ KMG Y H+ + I+R C CDG + F
Sbjct: 788 LSKMG---YFHDSKDIFRGNHSCVCDGLMDFGSF 880
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.140 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,542,410
Number of Sequences: 28460
Number of extensions: 18380
Number of successful extensions: 122
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of query: 68
length of database: 4,897,600
effective HSP length: 44
effective length of query: 24
effective length of database: 3,645,360
effective search space: 87488640
effective search space used: 87488640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)
Medicago: description of AC125479.3