TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125477.1 + phase: 2 /pseudo/partial
         (358 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP057878                                                               47  5e-06
TC10991 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-lik...    39  0.002
TC13125 similar to PIR|C96759|C96759 protein serine carboxypepti...    29  1.4
TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (...    28  1.8
TC15071                                                                28  3.1
BP059848                                                               27  5.3
BP062500                                                               27  5.3
TC11801                                                                26  9.0

>BP057878 
          Length = 546

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 22/26 (84%), Positives = 24/26 (91%)
 Frame = -2

Query: 333 KLKLSNAYTELNDPVVQRQRFAEQLK 358
           K ++ NAYTELNDPVVQRQRFAEQLK
Sbjct: 545 KHEVCNAYTELNDPVVQRQRFAEQLK 468


>TC10991 similar to UP|Q8VYA0 (Q8VYA0) Aspartate--tRNA ligase-like protein,
           partial (42%)
          Length = 680

 Score = 38.5 bits (88), Expect = 0.002
 Identities = 46/202 (22%), Positives = 82/202 (39%), Gaps = 22/202 (10%)
 Frame = +2

Query: 3   DLDEVEFCKFHSTVERG---DTVGVIGFPGKSEEG---DLSIFPKTFTVLSHCLHLMPDQ 56
           D+   +  KF + + R    D VGV+  P    +G    + I  +    +   +  +P  
Sbjct: 53  DVVSPQMVKFAAALNRESIIDVVGVVSVPAAPIKGATQQVEIQVRKLYCVGRAVPTLPIN 232

Query: 57  KSTAA-----------AAANNANLMES*NIHFKGSDIRE-----IFHTRNRIISYIQRHL 100
              AA           A      + +   ++F+  D+R      IF  ++ + +  ++ L
Sbjct: 233 LEDAARSDVEVEKALQAGDQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSHVGNAFRQFL 412

Query: 101 DDLDFMEVETPMMNKIAGGAAARPFVTHHNELDLKLFMRIAPELYLKQLVVGGMERVYEI 160
              +F+E+ TP +  IAG +     V   +       +  +P+L+ +  + G   RV+EI
Sbjct: 413 LKENFVEIHTPKL--IAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEI 586

Query: 161 GKQFRNEDIDLTHNPEFTTCEF 182
           G  FR ED   TH      CEF
Sbjct: 587 GPVFRAED-SFTHR---HLCEF 640


>TC13125 similar to PIR|C96759|C96759 protein serine carboxypeptidase
           T18K17.3 [imported] -                Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (29%)
          Length = 698

 Score = 28.9 bits (63), Expect = 1.4
 Identities = 15/43 (34%), Positives = 24/43 (54%)
 Frame = +1

Query: 171 LTHNPEFTTCEFYMAYNEYNDLMEITERMLSGLVQELTNGSYK 213
           L  +PEF + EFYM  + Y+ +          +VQE++NG+ K
Sbjct: 472 LIDHPEFLSNEFYMGADSYSGI------PAPAIVQEISNGNEK 582


>TC10403 similar to UP|O80815 (O80815) T8F5.22 protein, partial (15%)
          Length = 1392

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 13/47 (27%), Positives = 26/47 (54%), Gaps = 8/47 (17%)
 Frame = +3

Query: 83  REIFHTRNRIISYIQRHLDD--------LDFMEVETPMMNKIAGGAA 121
           +++F   +R+++Y QRH+DD        +  +    PM +  AGG++
Sbjct: 516 KKMFEDIDRLVAYFQRHIDDPLHDSAPSIRSVAAMVPMRSPAAGGSS 656


>TC15071 
          Length = 855

 Score = 27.7 bits (60), Expect = 3.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 126 VTHHNELDLKLFMRIAPELYLKQ 148
           VTHH E    L  R+ P +Y+K+
Sbjct: 803 VTHHKETGFSLIHRLKPHIYVKE 735


>BP059848 
          Length = 287

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 12/37 (32%), Positives = 20/37 (53%)
 Frame = -1

Query: 34  GDLSIFPKTFTVLSHCLHLMPDQKSTAAAAANNANLM 70
           G + +FP +F +L +C HL   + S      N+ N+M
Sbjct: 152 GFVCVFPPSFDLLKYCCHLCLYECSIRICI*NSXNVM 42


>BP062500 
          Length = 560

 Score = 26.9 bits (58), Expect = 5.3
 Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 1/51 (1%)
 Frame = +2

Query: 206 ELTNGSYKIKYHANGVDKDPIEI-DFTPPFRRIDMIEELESMAGLSIPKDL 255
           +L++ S     H   V + P  + DF+ PF   D +  LES    S+ KD+
Sbjct: 161 KLSSDSLPYSAHDKAVPETPTNVEDFSNPFAISDFLNRLESGKFGSVTKDI 313


>TC11801 
          Length = 804

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 14/56 (25%), Positives = 28/56 (50%)
 Frame = +2

Query: 146 LKQLVVGGMERVYEIGKQFRNEDIDLTHNPEFTTCEFYMAYNEYNDLMEITERMLS 201
           L  L+      ++EI  +F +    L+ N  FT C + +   + N ++  TER+++
Sbjct: 56  LFSLLKADQRPIHEILAEFNST---LSRNRHFTLCSYLLMLLQDNKVLTTTERLIA 214


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,520,262
Number of Sequences: 28460
Number of extensions: 67049
Number of successful extensions: 266
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of query: 358
length of database: 4,897,600
effective HSP length: 91
effective length of query: 267
effective length of database: 2,307,740
effective search space: 616166580
effective search space used: 616166580
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)