BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC125368.9 + phase: 0
(216 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein... 407 e-115
NP459466 RAB8C [Lotus japonicus] 402 e-113
TC15772 UP|Q40218 (Q40218) RAB8D, complete 401 e-113
TC14195 UP|Q40215 (Q40215) RAB8A, complete 399 e-112
TC8253 UP|Q40219 (Q40219) RAB8E, complete 395 e-111
TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete 244 1e-65
TC8227 UP|Q40203 (Q40203) RAB1C, complete 242 4e-65
TC8930 UP|Q40204 (Q40204) RAB1D, complete 240 2e-64
TC12907 UP|Q40201 (Q40201) RAB1A, complete 236 2e-63
AU089325 215 5e-57
TC14872 UP|Q40208 (Q40208) RAB2A, complete 183 2e-47
TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete 181 9e-47
TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein ... 179 3e-46
TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Ra... 175 6e-45
TC18671 UP|Q40198 (Q40198) RAB11H, complete 172 4e-44
TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete 168 6e-43
TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete 167 1e-42
NP459482 RAB11J [Lotus japonicus] 167 1e-42
TC11251 UP|R11E_LOTJA (Q40195) Ras-related protein Rab11E, complete 167 2e-42
TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete 166 2e-42
>TC9124 homologue to UP|Q41024 (Q41024) Small GTP-binding protein, complete
Length = 1109
Score = 407 bits (1047), Expect = e-115
Identities = 203/216 (93%), Positives = 212/216 (97%)
Frame = +3
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 252 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 431
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKRIKL IWDTAGQERFRTITTAYY GAMGILLVYDVTDESSFN+I+NWIR++E HASDN
Sbjct: 432 GKRIKLHIWDTAGQERFRTITTAYYLGAMGILLVYDVTDESSFNHIQNWIRHLEPHASDN 611
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV+EVFFSIARDIKQR
Sbjct: 612 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDIKQR 791
Query: 181 LADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
+AD DSK+EPQT+KINQPDQGAG+AQAAQKSACCGS
Sbjct: 792 VADNDSKAEPQTLKINQPDQGAGSAQAAQKSACCGS 899
>NP459466 RAB8C [Lotus japonicus]
Length = 639
Score = 402 bits (1033), Expect = e-113
Identities = 206/216 (95%), Positives = 207/216 (95%)
Frame = +1
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 180
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKRIKLQIWDTAGQER RTITTAYYRGA GILLVYDVTDESSFNNIRNWIRNIEQHASDN
Sbjct: 181 GKRIKLQIWDTAGQERVRTITTAYYRGAKGILLVYDVTDESSFNNIRNWIRNIEQHASDN 360
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 361 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 540
Query: 181 LADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
LADTDSK+EPQTIKINQPDQ A AAQ S CCGS
Sbjct: 541 LADTDSKAEPQTIKINQPDQPA----AAQNSTCCGS 636
>TC15772 UP|Q40218 (Q40218) RAB8D, complete
Length = 1139
Score = 401 bits (1031), Expect = e-113
Identities = 202/215 (93%), Positives = 208/215 (95%)
Frame = +2
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 239 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 418
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKR+KLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNIRNWIRNIEQHASDN
Sbjct: 419 GKRVKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIRNWIRNIEQHASDN 598
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 599 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 778
Query: 181 LADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCG 215
LADTD K+EP T+KINQ D AGA +AA KS+CCG
Sbjct: 779 LADTDHKAEPTTLKINQ-DSAAGAGEAANKSSCCG 880
>TC14195 UP|Q40215 (Q40215) RAB8A, complete
Length = 1171
Score = 399 bits (1025), Expect = e-112
Identities = 202/214 (94%), Positives = 207/214 (96%)
Frame = +2
Query: 3 APPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK 62
AP ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK
Sbjct: 209 APAARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGK 388
Query: 63 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVN 122
RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDE+SFNNI+NWIRNIEQHASDNVN
Sbjct: 389 RIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEASFNNIKNWIRNIEQHASDNVN 568
Query: 123 KILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 182
KILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA
Sbjct: 569 KILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 748
Query: 183 DTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
DTDS++EPQTI+INQPD A QAAQKS CCGS
Sbjct: 749 DTDSRAEPQTIQINQPDASASGGQAAQKS-CCGS 847
>TC8253 UP|Q40219 (Q40219) RAB8E, complete
Length = 1106
Score = 395 bits (1014), Expect = e-111
Identities = 203/216 (93%), Positives = 208/216 (95%), Gaps = 1/216 (0%)
Frame = +3
Query: 1 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 60
MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD
Sbjct: 183 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELD 362
Query: 61 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDN 120
GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI+NWI NIEQHASDN
Sbjct: 363 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIKNWIHNIEQHASDN 542
Query: 121 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 180
VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR
Sbjct: 543 VNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 722
Query: 181 LADTD-SKSEPQTIKINQPDQGAGAAQAAQKSACCG 215
LADTD SK+EP IKIN D+G+ A +AAQKSACCG
Sbjct: 723 LADTDSSKTEPTGIKINPQDKGS-AGEAAQKSACCG 827
>TC9167 UP|Q40202 (Q40202) RAB1B (Fragment), complete
Length = 951
Score = 244 bits (622), Expect = 1e-65
Identities = 124/211 (58%), Positives = 154/211 (72%), Gaps = 1/211 (0%)
Frame = +2
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
R +YDYL KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E D K IKL
Sbjct: 89 RMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIKL 268
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LV
Sbjct: 269 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLV 448
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD- 185
GNK+D+ + RAV +A ADE GI F ETSAK NVE+ F ++A IK R+A
Sbjct: 449 GNKSDL-TANRAVSYETAKAFADEIGIPFMETSAKDATNVEQAFMAMAASIKNRMASQPA 625
Query: 186 SKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
+ + P T+ I+ G Q S CC S
Sbjct: 626 NNARPPTVNISGKPVG-------QSSGCCSS 697
>TC8227 UP|Q40203 (Q40203) RAB1C, complete
Length = 1083
Score = 242 bits (617), Expect = 4e-65
Identities = 123/208 (59%), Positives = 155/208 (74%), Gaps = 2/208 (0%)
Frame = +2
Query: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
+YDYL KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E DGK IKLQIWD
Sbjct: 137 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWD 316
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+ I+++AS+NVNK+LVGNK
Sbjct: 317 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKC 496
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTD-SKSE 189
D+ +K V +A ADE GI F ETSAK NVE+ F ++A +IK R+A + +
Sbjct: 497 DLTANK-VVSYETAKAFADEIGIPFMETSAKNATNVEQAFMAMAAEIKNRMASQPVNNAR 673
Query: 190 PQTIKI-NQPDQGAGAAQAAQKSACCGS 216
P T++I QP QKS CC S
Sbjct: 674 PPTVQIRGQP--------VNQKSGCCSS 733
>TC8930 UP|Q40204 (Q40204) RAB1D, complete
Length = 943
Score = 240 bits (612), Expect = 2e-64
Identities = 123/212 (58%), Positives = 150/212 (70%), Gaps = 2/212 (0%)
Frame = +3
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
R +YDYL KLLLIGDSGVGKSCLLLRF D S+ S+I+TIG+DFKIRT+E D K IKL
Sbjct: 87 RMNPEYDYLFKLLLIGDSGVGKSCLLLRFGDDSYIESYISTIGVDFKIRTVEQDAKTIKL 266
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+LV
Sbjct: 267 QIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLV 446
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 186
GNK D+ + RAV + AD GI F ETSAK NVE+ F +++ IK R+A S
Sbjct: 447 GNKCDL-TANRAVSYDTAKEFADPIGIPFMETSAKDATNVEQAFMAMSASIKNRMASQPS 623
Query: 187 --KSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
P T++I G QKS CC S
Sbjct: 624 ANNGRPPTVQIRGQPVG-------QKSGCCSS 698
>TC12907 UP|Q40201 (Q40201) RAB1A, complete
Length = 869
Score = 236 bits (602), Expect = 2e-63
Identities = 120/207 (57%), Positives = 154/207 (73%), Gaps = 2/207 (0%)
Frame = +2
Query: 11 DYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWD 70
+YDYL KLLLIGDS VGKSCLLLRF+D S+ S+I+TIG+DFKIRT+EL GK IKLQIWD
Sbjct: 122 EYDYLFKLLLIGDSSVGKSCLLLRFADDSYVDSYISTIGVDFKIRTVELQGKTIKLQIWD 301
Query: 71 TAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKA 130
TAGQERFRTIT++YYRGA GI++VYDVT+ SFNN++ W+ I+++A+D+V K+LVGNK+
Sbjct: 302 TAGQERFRTITSSYYRGAHGIIIVYDVTEMESFNNVKQWLNEIDRYANDSVCKLLVGNKS 481
Query: 131 DMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSKS 188
D+ E+K V T +A ADE GI F ETSAK ++NVE+ F ++A +IK+++ T SKS
Sbjct: 482 DLVENK-VVDTQTAKAFADELGIPFLETSAKDSINVEQAFLTMAAEIKKKMGSQPTGSKS 658
Query: 189 EPQTIKINQPDQGAGAAQAAQKSACCG 215
QP QKS CCG
Sbjct: 659 AETVQMKGQP--------IPQKSNCCG 715
>AU089325
Length = 757
Score = 215 bits (547), Expect = 5e-57
Identities = 104/156 (66%), Positives = 126/156 (80%)
Frame = +3
Query: 6 ARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIK 65
A +YDYL KLLLIGDSGVGKSCLLLRF+D S+ S+I+TIG+DFKIRT+E D K IK
Sbjct: 42 AAMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYIESYISTIGVDFKIRTVEQDAKTIK 221
Query: 66 LQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKIL 125
LQIWDTAGQERFRTIT++YYRGA GI++VYDVTDE SFNN++ W+ I+++ASDNVNK+L
Sbjct: 222 LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLL 401
Query: 126 VGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK 161
VGNK D+ + RAV + AD+ GI F ETSAK
Sbjct: 402 VGNKCDL-TANRAVSYDTAKEFADQIGIPFMETSAK 506
>TC14872 UP|Q40208 (Q40208) RAB2A, complete
Length = 1125
Score = 183 bits (465), Expect = 2e-47
Identities = 97/209 (46%), Positives = 130/209 (61%), Gaps = 6/209 (2%)
Frame = +3
Query: 12 YDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDT 71
Y YL K ++IGD+GVGKSCLLL+F+D F TIG++F R I +D K IKLQIWDT
Sbjct: 213 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDT 392
Query: 72 AGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKAD 131
AGQE FR+IT +YYRGA G LLVYD+T +FN++ +W+ + QHA+ N+ +L+GNK D
Sbjct: 393 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCD 572
Query: 132 MDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSKSE 189
+ +RAV T +G+ A E+G+ F E SAKT NVEE F A I +++ D D +E
Sbjct: 573 L-AHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAATIYKKIQDGVFDVSNE 749
Query: 190 PQTIKIN----QPDQGAGAAQAAQKSACC 214
IK+ G +A CC
Sbjct: 750 SYGIKVGYGGIPGPSGGRDGPSASAGGCC 836
>TC8163 UP|R11C_LOTJA (Q40193) Ras-related protein Rab11C, complete
Length = 1193
Score = 181 bits (459), Expect = 9e-47
Identities = 91/214 (42%), Positives = 133/214 (61%), Gaps = 4/214 (1%)
Frame = +3
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
R +YDYL K++LIGDSGVGKS +L RF+ F +TIG++F RT++++GK +K
Sbjct: 246 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKA 425
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYD+T +F+N++ W+R + HA N+ ++
Sbjct: 426 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMA 605
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 186
GNK+D++ RAV G ALA++ G+ F ETSA N+E+ F +I +I ++
Sbjct: 606 GNKSDLNH-LRAVSEDDGGALAEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKAL 782
Query: 187 KSEPQTIKINQPDQG----AGAAQAAQKSACCGS 216
++ T + P QG K CC +
Sbjct: 783 AAQEATAGASVPGQGTTINVADTSGNTKKGCCST 884
>TC15729 homologue to UP|RB1C_ARATH (O04486) Ras-related protein Rab11C,
partial (85%)
Length = 860
Score = 179 bits (455), Expect = 3e-46
Identities = 93/213 (43%), Positives = 130/213 (60%), Gaps = 5/213 (2%)
Frame = +2
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
R +YDYL K++LIGDSGVGKS LL RF+ F +TIG++F RT+E++G+ +K
Sbjct: 92 RGEEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLEVEGRMVKA 271
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYDVT +SF N+ W++ + HA N+ +L+
Sbjct: 272 QIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTSFENVTRWLKELRDHADANIVIMLI 451
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRL 181
GNK D+ + R V T Q+ A++ G+ F ETSA NV++ F +I I K+ L
Sbjct: 452 GNKTDL-KHLRGVATEDAQSYAEKEGLSFIETSALEATNVDKAFQTILAQIYRIISKKSL 628
Query: 182 ADTDSKSEPQTIKINQPDQGAGAAQAAQKSACC 214
+ + + IK G Q +CC
Sbjct: 629 SSSSTDPSAPNIKQGNTITIQGGLQPNTSKSCC 727
>TC15074 similar to UP|R11B_TOBAC (Q40521) Ras-related protein Rab11B,
partial (89%)
Length = 973
Score = 175 bits (443), Expect = 6e-45
Identities = 94/219 (42%), Positives = 127/219 (57%), Gaps = 6/219 (2%)
Frame = +3
Query: 4 PPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKR 63
P + DYDYL KL+LIGDSGVGKS LL RF+ F +TIG++F R++ + K
Sbjct: 165 PMGTSDEDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSVRIHDKT 344
Query: 64 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNK 123
+K QIWDTAGQER+R IT+AYYRGA+G L+VYDVT + +F N++ W++ + H N+
Sbjct: 345 VKAQIWDTAGQERYRAITSAYYRGAVGALIVYDVTRQVTFENVQRWLKELRDHTDANIVI 524
Query: 124 ILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI------ 177
+LVGNKAD+ RAVPT + A A+ F ETSA +LNV+ F + +I
Sbjct: 525 MLVGNKADL-RHLRAVPTEEATAFAERENTYFMETSALESLNVDNAFIXVLSEIYNVVSR 701
Query: 178 KQRLADTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
K D + PQ IN G + CC +
Sbjct: 702 KTLXKGNDPGALPQGQTIN-----LGDVSXXKXPGCCSA 803
>TC18671 UP|Q40198 (Q40198) RAB11H, complete
Length = 1181
Score = 172 bits (436), Expect = 4e-44
Identities = 94/218 (43%), Positives = 126/218 (57%), Gaps = 8/218 (3%)
Frame = +3
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
RA DYDYL K++LIGDSGVGKS LL RF+ F+ +TIG++F R+I +D K +K
Sbjct: 216 RADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIRVDDKVVKA 395
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYDVT +F N+ W++ + H N+ +LV
Sbjct: 396 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDTNIVVMLV 575
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA---- 182
GNKAD+ + L +E F ETSA +LNVE F + I + ++
Sbjct: 576 GNKADLRHLRAVSTEDSSGFLLNERTHFFMETSALESLNVENAFTEVLTQIYRVVSKKAL 755
Query: 183 ----DTDSKSEPQTIKINQPDQGAGAAQAAQKSACCGS 216
D + + QTI + D +KS CC S
Sbjct: 756 EIGDDPTALPKGQTINVGSRDD----VSPVKKSGCCSS 857
>TC9840 UP|R11D_LOTJA (Q40194) Ras-related protein Rab11D, complete
Length = 1302
Score = 168 bits (426), Expect = 6e-43
Identities = 92/221 (41%), Positives = 129/221 (57%), Gaps = 11/221 (4%)
Frame = +2
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
R +YDYL KL+LIGDSGVGKS LL RF+ F +TIG++F +T+ +D K +K
Sbjct: 260 RTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKA 439
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYDVT ++F N W++ + H N+ +L+
Sbjct: 440 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLI 619
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE----EVFFSIARDIKQRLA 182
GNK+D+ AVPT G++ A+ + F ETSA NVE EV I R + +R
Sbjct: 620 GNKSDL-RHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAV 796
Query: 183 DTDSK-------SEPQTIKINQPDQGAGAAQAAQKSACCGS 216
+ S+ QTI + + + ++ CC +
Sbjct: 797 EAGDSGSSSGLPSKGQTINVKED------SSVLKRFGCCST 901
>TC16978 UP|R11A_LOTJA (Q40191) Ras-related protein Rab11A, complete
Length = 984
Score = 167 bits (424), Expect = 1e-42
Identities = 90/215 (41%), Positives = 135/215 (61%), Gaps = 8/215 (3%)
Frame = +2
Query: 8 ARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQ 67
A A DY+ K++LIGDS VGKS +L RF+ F+ +TIG++F+ RT+ +D K +K Q
Sbjct: 89 ANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQ 268
Query: 68 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVG 127
IWDTAGQER+R +T+AYYRGA+G +LVYD+T +F++I W+ + HA N+ IL+G
Sbjct: 269 IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIG 448
Query: 128 NKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLA 182
NK D+ ++R VPT + A++ G+ F ETSA NVE F ++ +I K+ LA
Sbjct: 449 NKCDL-VNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEIYNIVNKKSLA 625
Query: 183 DTDSKSEPQTIKIN-QPDQGAGAAQ--AAQKSACC 214
+S+ + ++ Q G AQ A+++ CC
Sbjct: 626 ADESQGNGNSASLSGQKIIIPGPAQEIPAKRNMCC 730
>NP459482 RAB11J [Lotus japonicus]
Length = 672
Score = 167 bits (423), Expect = 1e-42
Identities = 90/213 (42%), Positives = 134/213 (62%), Gaps = 9/213 (4%)
Frame = +1
Query: 13 DYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTA 72
DYL K++LIGDS VGKS LL RF+ F + +TIG++F+ + I+++GK IK QIWDTA
Sbjct: 34 DYLFKIVLIGDSAVGKSNLLARFARDEFYPNSKSTIGVEFQTQKIDINGKEIKAQIWDTA 213
Query: 73 GQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADM 132
GQERFR +T+AYYRGA+G L+VYD++ +F++I W+ + H+ NV ILVGNK+D+
Sbjct: 214 GQERFRAVTSAYYRGAVGALVVYDISRRQTFDSIGRWLNELHTHSDMNVVTILVGNKSDL 393
Query: 133 DESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSKSEPQT 192
++ R V T++G+ALA+ G+ F ETSA + NV F ++ ++I L+ S+ T
Sbjct: 394 KDA-REVTTAEGKALAEAQGLFFMETSALDSSNVAAAFQTVVKEIYNILSRKVMMSQELT 570
Query: 193 -IKINQPDQGAGA--------AQAAQKSACCGS 216
++ + + G A K CC S
Sbjct: 571 KHEVPRIENGKSVVIQGENLEADGQSKKGCCSS 669
>TC11251 UP|R11E_LOTJA (Q40195) Ras-related protein Rab11E, complete
Length = 950
Score = 167 bits (422), Expect = 2e-42
Identities = 90/202 (44%), Positives = 125/202 (61%), Gaps = 11/202 (5%)
Frame = +2
Query: 7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKL 66
+A +YDYL KL+LIGDSGVGKS LL RF+ F +TIG++F +++ +DGK IK
Sbjct: 74 KADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGKVIKA 253
Query: 67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILV 126
QIWDTAGQER+R IT+AYYRGA+G LLVYDVT ++F W++ + H N+ +L+
Sbjct: 254 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLI 433
Query: 127 GNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVE----EVFFSIARDIKQRLA 182
GNK+D+ V T G+A A++ + F ETSA NVE EV I R + +R
Sbjct: 434 GNKSDL-RHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAV 610
Query: 183 DTDSK-------SEPQTIKINQ 197
+ + S+ QTI +N+
Sbjct: 611 EAGDRPSTSVVPSQGQTINVNE 676
>TC15306 UP|Q40207 (Q40207) RAB1Y (Fragment), complete
Length = 1019
Score = 166 bits (421), Expect = 2e-42
Identities = 96/218 (44%), Positives = 131/218 (60%), Gaps = 5/218 (2%)
Frame = +2
Query: 2 AAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDG 61
A + A ++DYL KLL+IGDSGVGKS LLL F+ F TIG+DFK++ + + G
Sbjct: 71 AMDSSSAPQEFDYLFKLLMIGDSGVGKSSLLLSFTSDEFQ-DMSPTIGVDFKVKYVAIGG 247
Query: 62 KRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRN-WIRNIEQHASD- 119
K++KL IWDTAGQERFRT+T++YYRGA GI++VYDVT +F N+ W + I+ ++++
Sbjct: 248 KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQ 427
Query: 120 NVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIA---RD 176
+ K+LVGNK D ES R V +G A EYG F E SAKT +NV++ F + D
Sbjct: 428 DCIKMLVGNKVD-KESDRVVSKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILD 604
Query: 177 IKQRLADTDSKSEPQTIKINQPDQGAGAAQAAQKSACC 214
LA+ + K QP A S+CC
Sbjct: 605 TPSLLAEGSKGVKKNIFKDKQPQADAST------SSCC 700
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.318 0.134 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,117,407
Number of Sequences: 28460
Number of extensions: 31446
Number of successful extensions: 234
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of query: 216
length of database: 4,897,600
effective HSP length: 86
effective length of query: 130
effective length of database: 2,450,040
effective search space: 318505200
effective search space used: 318505200
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)
Medicago: description of AC125368.9