TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC125368.2 - phase: 0 
         (430 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial...   205  1e-53
AV411195                                                              176  5e-45
BP061082                                                              101  2e-22
BP046554                                                               55  2e-08
AW720493                                                               31  0.45
TC16716 similar to GB|AAP37657.1|30725270|BT008298 At5g05630 {Ar...    29  1.3
TC19169 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G...    29  1.7
TC17347 similar to UP|Q9FMX3 (Q9FMX3) Monosaccharide transporter...    28  2.2
BP080135                                                               28  2.9
CB826858                                                               28  2.9
AV410254                                                               28  3.8
AV780226                                                               27  5.0
TC16777 weakly similar to GB|AAM47323.1|21360415|AY113015 AT3g12...    27  5.0
TC15595 homologue to UP|Q8L784 (Q8L784) Cytoplasmic aconitate hy...    27  5.0
AV419392                                                               27  6.5
TC18477                                                                27  6.5
TC8540 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7H2...    27  6.5
TC9536 similar to UP|Q8LPQ8 (Q8LPQ8) AT4g35300/F23E12_140, parti...    27  6.5
BP062234                                                               27  8.5
TC15751 similar to UP|Q8S4V8 (Q8S4V8) Holocarboxylase synthetase...    27  8.5

>TC18989 similar to UP|Q94AA1 (Q94AA1) AT3g09470/F11F8_4, partial (25%)
          Length = 489

 Score =  205 bits (522), Expect = 1e-53
 Identities = 103/134 (76%), Positives = 116/134 (85%)
 Frame = +2

Query: 6   IHHDEETPLVVESPIQLQPHKSHSRDVHILSIAFVLIFLAYGAAQNLQSTLNTEEDLGTT 65
           I  DEE PL+      L+  KSH+RDVHILS++F+LIFLAYGAAQNLQSTLNTE+DLGTT
Sbjct: 47  ILRDEEVPLLTNDDSSLESPKSHTRDVHILSLSFLLIFLAYGAAQNLQSTLNTEQDLGTT 226

Query: 66  SLGILYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAANLKPNWYTLVPASVYLGF 125
           SLGILYLSFT FSVFAS VVR LGSKN+LIIGT+GY LY+AANLKPNWYTLVP+S++LGF
Sbjct: 227 SLGILYLSFTIFSVFASSVVRNLGSKNSLIIGTTGYLLYLAANLKPNWYTLVPSSLFLGF 406

Query: 126 CASIIWVGQITIST 139
           CASIIWVGQ T  T
Sbjct: 407 CASIIWVGQGTYLT 448


>AV411195 
          Length = 415

 Score =  176 bits (447), Expect = 5e-45
 Identities = 98/137 (71%), Positives = 108/137 (78%)
 Frame = +3

Query: 253 VYNKHLYGLNLPSLL*LQQLVFLVLVLQWQHMGLLMEYVLWLLVVSPLVSRPLHR*FLLE 312
           VYNKHL GLNLPS+L*L QLVFLV V+ W H GLLME+VL LLVVSPLVSR L +*+ LE
Sbjct: 3   VYNKHLSGLNLPSML*LLQLVFLVWVVYWPHTGLLMEFVLLLLVVSPLVSRLLRQ*YPLE 182

Query: 313 LLLRRLH*SYFC*ISAYLADFSVLHIYSFWLLYWASVMEF**HSSMLC*EYYLSMTWKGL 372
           L+  +L+*S FC*I  YL D  VL+IY FWLL WA VMEF *HSSMLC E YLSMT K L
Sbjct: 183 LVSNQLY*SCFC*IXXYLPDCLVLYIYCFWLLCWALVMEFS*HSSMLCLECYLSMTRKVL 362

Query: 373 LHS*RYGKALQLLSCSF 389
           L S*RYG+A QLL CSF
Sbjct: 363 LRS*RYGRAQQLLLCSF 413


>BP061082 
          Length = 359

 Score =  101 bits (252), Expect = 2e-22
 Identities = 53/81 (65%), Positives = 58/81 (71%)
 Frame = -1

Query: 350 MEF**HSSMLC*EYYLSMTWKGLLHS*RYGKALQLLSCSFWPRTFRSKQLP*SCWFYYAC 409
           MEF * SSMLC + YLSMT KGLLHS* YG+ALQLLSCSF P T R +   * CW  +A 
Sbjct: 359 MEFL*RSSMLCLDCYLSMTRKGLLHS*IYGRALQLLSCSFCPPTSRLRPWL*LCWLSFAS 180

Query: 410 HSVVFYGWLSRWGMHHHPPPV 430
           HS  FYG LSRW  HH+PP V
Sbjct: 179 HSAAFYG*LSRW*RHHYPPLV 117


>BP046554 
          Length = 556

 Score = 55.5 bits (132), Expect = 2e-08
 Identities = 31/41 (75%), Positives = 33/41 (79%)
 Frame = -2

Query: 134 QITISTKVL*LVTSTGNSGLFMHSISLLEILLHLLYSVMGR 174
           QIT   KV *LVTS GNSGL + S SLLEILLHLLYS+MGR
Sbjct: 510 QITSWMKVQ*LVTSMGNSGLCLPSTSLLEILLHLLYSMMGR 388


>AW720493 
          Length = 442

 Score = 30.8 bits (68), Expect = 0.45
 Identities = 25/76 (32%), Positives = 37/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 276 VLVLQWQHMGLLMEYVLWLLVVSPLVSRPLHR*FLLELLLRRLH*SYFC*ISAYLADFSV 335
           V+V+ +QHM + ++YV W +V   L+S      F LE   R          S  L  F +
Sbjct: 235 VIVVLYQHM*VYLDYV-WSVVNLGLISH-----FSLEFFFR---------YSGKLCLFGL 369

Query: 336 LHIYSF-WLLYWASVM 350
           LH++ F W L W + M
Sbjct: 370 LHMHFFLWSLKWFNFM 417


>TC16716 similar to GB|AAP37657.1|30725270|BT008298 At5g05630 {Arabidopsis
           thaliana;}, partial (28%)
          Length = 580

 Score = 29.3 bits (64), Expect = 1.3
 Identities = 21/87 (24%), Positives = 43/87 (49%)
 Frame = +3

Query: 27  SHSRDVHILSIAFVLIFLAYGAAQNLQSTLNTEEDLGTTSLGILYLSFTFFSVFASLVVR 86
           +H + V +L + F++ +   G    ++ T++    L  + LG L      +SV  +L+  
Sbjct: 159 NHMKKVSVLPLVFLIFYEVSGGPFGVEDTVHAAGPL-LSLLGFLLFPL-IWSVPEALITA 332

Query: 87  ILGSKNALIIGTSGYWLYVAANLKPNW 113
            +G+   +    SGY ++V++ L P W
Sbjct: 333 EMGT---MFPENSGYVVWVSSALGPYW 404


>TC19169 similar to GB|AAP21178.1|30102520|BT006370 At3g08040/T8G24.8
           {Arabidopsis thaliana;}, partial (17%)
          Length = 561

 Score = 28.9 bits (63), Expect = 1.7
 Identities = 18/42 (42%), Positives = 21/42 (49%)
 Frame = -3

Query: 150 NSGLFMHSISLLEILLHLLYSVMGRGEVPTAPLYCLLYSFSL 191
           +S L MH +  LE+ LHLL          T P YC L SF L
Sbjct: 409 HSSLRMHILLYLEVKLHLL----------TCP*YCQLVSFPL 314


>TC17347 similar to UP|Q9FMX3 (Q9FMX3) Monosaccharide transporter (STP11
           protein), partial (30%)
          Length = 663

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 3/70 (4%)
 Frame = +3

Query: 59  EEDLGTTSLGILYLSFTFFSVFASLVVRILGSKNALIIGTSGYWLYVAANLK---PNWYT 115
           + +L T     LYL+    S FAS   R+LG K ++  G  G +  V A L     N   
Sbjct: 402 DNELLTLFTSSLYLAALIASFFASTTTRMLGRKTSMFAG--GLFFLVGALLNGFAVNIEM 575

Query: 116 LVPASVYLGF 125
           L+   + LGF
Sbjct: 576 LIIGRLLLGF 605


>BP080135 
          Length = 519

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 19/60 (31%), Positives = 30/60 (49%)
 Frame = -1

Query: 238 LMRRCC*SYPLWHIQVYNKHLYGLNLPSLL*LQQLVFLVLVLQWQHMGLLMEYVLWLLVV 297
           ++  CC    L+ I+V       L LPS+  L  L+ LV+ + W  +  +M   + LLVV
Sbjct: 318 ILMGCCCLQALYLIRVKR-----LKLPSICVLSLLITLVIKISWISVSQMMILPMTLLVV 154


>CB826858 
          Length = 521

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 59  EEDLGTTSLGILYLSFTFFSVFAS----LVVRILGSKNALIIGTSGYWLY 104
           EEDLG  +  + +    FF VFA     L +RIL +K AL+I     WL+
Sbjct: 184 EEDLGNGNKNLKFCIICFFFVFAIL*Y*LWLRILETKIALLI-----WLF 318


>AV410254 
          Length = 403

 Score = 27.7 bits (60), Expect = 3.8
 Identities = 18/48 (37%), Positives = 29/48 (59%)
 Frame = +3

Query: 144 LVTSTGNSGLFMHSISLLEILLHLLYSVMGRGEVPTAPLYCLLYSFSL 191
           L+T+T   GL M  ISLL ++ HL+++    G +PT  +  LL  +S+
Sbjct: 225 LMTTTNQIGL-MSPISLLALIRHLMHA----GRIPTL*MMKLLVHWSV 353


>AV780226 
          Length = 586

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 255 NKHLYGLNLPSLL*LQQLVFLVLVLQWQHMGLLM 288
           NKH      PS + L  L  L+L LQW+ + LL+
Sbjct: 142 NKHKKSFQFPSPVTLITLFLLLLYLQWRLLHLLL 243


>TC16777 weakly similar to GB|AAM47323.1|21360415|AY113015
           AT3g12650/T2E22_103 {Arabidopsis thaliana;}, partial
           (42%)
          Length = 559

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 183 YCLLY-SFSL*PLVQY*CSSCINELVIVKKNTRIQKPMLLNQSPLSL 228
           YC  Y SF + P+ Q  C  C   L  +KK+ ++ + +L NQ+ L L
Sbjct: 481 YCEDYFSFLVSPISQLQCKHCY*SLNKIKKHPQLIEHILRNQNQLHL 341


>TC15595 homologue to UP|Q8L784 (Q8L784) Cytoplasmic aconitate hydratase
            (At2g05710), partial (26%)
          Length = 1077

 Score = 27.3 bits (59), Expect = 5.0
 Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 3/41 (7%)
 Frame = -1

Query: 215  IQKPMLLNQSPLS-LYVNHSQVHCLMRRC--C*SYPLWHIQ 252
            +Q P+  +++ LS LYVN SQ+HC  R    C*  P   IQ
Sbjct: 1035 LQHPIQQHRAHLS*LYVNRSQLHCQDRVSPRC*KQPAQDIQ 913


>AV419392 
          Length = 318

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 73  SFTFFSVFASLVVRILGSKNALIIGTSGYWLYVA 106
           SFT +S FA+ V+ +L S  +L +    +W  ++
Sbjct: 111 SFTHYSSFANFVLHVLHSSTSLTLTHCKFWFDIS 212


>TC18477 
          Length = 655

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 25/90 (27%), Positives = 42/90 (45%), Gaps = 1/90 (1%)
 Frame = -3

Query: 151 SGLFMHSISLLEILLHLLYSVMGRGEVPTAPLYCLLYSFSL*PLVQY*CSSCINELVIVK 210
           S + ++    LEI+LH+ Y +            CL+Y F  * L        ++EL   K
Sbjct: 482 SSVHLYGTKFLEIILHVFYVIR-----------CLIYVFR**TL-------SLDELKREK 357

Query: 211 KNTR-IQKPMLLNQSPLSLYVNHSQVHCLM 239
            + R I+   +L   PL+L V+H+ +  +M
Sbjct: 356 GSKRCIKGSHILPPFPLNLPVDHNLLALMM 267


>TC8540 similar to GB|AAM16209.1|20334906|AY094053 AT5g02020/T7H20_70
           {Arabidopsis thaliana;}, partial (17%)
          Length = 607

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +2

Query: 378 YGKALQLLSCSFWPRTF--RSKQLP*SCWFYYACHSVVFYGWLSRWGMHH 425
           + +   LL C F+ R+F    K+ P   WF  +  +VV    LSRW M H
Sbjct: 35  FSRVSPLLFCRFFMRSFCFLGKEKPQLGWFIASDFNVV----LSRWLMFH 172


>TC9536 similar to UP|Q8LPQ8 (Q8LPQ8) AT4g35300/F23E12_140, partial (17%)
          Length = 537

 Score = 26.9 bits (58), Expect = 6.5
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 123 LGFCASIIWVGQITISTKVL*LVTSTGNSGLF 154
           +  CA + W+G I ++  +  +++S G +G+F
Sbjct: 134 IAICALVFWIGDIIVTYTLPVMLSSMGLAGVF 229


>BP062234 
          Length = 204

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 1   MASVTIHHDEE--TPLVVESPIQLQPHKSHSRDVHILSIAFVLIFLAY 46
           M   T+HH ++  T L VES      HK+H R  +I+    ++    Y
Sbjct: 61  MTVFTLHHTKQWTTQLFVESRGNRSTHKNHPRK*NIMQYGQIITTFLY 204


>TC15751 similar to UP|Q8S4V8 (Q8S4V8) Holocarboxylase synthetase 1, partial
           (80%)
          Length = 1470

 Score = 26.6 bits (57), Expect = 8.5
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 10/45 (22%)
 Frame = +3

Query: 173 GRGE---VPTAPLYCLLYSFSL-------*PLVQY*CSSCINELV 207
           GRG    V  +PL CL++SF+L        PLVQY  S  I E +
Sbjct: 465 GRGRSKNVWESPLGCLMFSFTLQMEDGRVVPLVQYVVSLAITEAI 599


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.344    0.150    0.524 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,997,466
Number of Sequences: 28460
Number of extensions: 170512
Number of successful extensions: 2038
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 1994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2030
length of query: 430
length of database: 4,897,600
effective HSP length: 93
effective length of query: 337
effective length of database: 2,250,820
effective search space: 758526340
effective search space used: 758526340
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.6 bits)
S2: 56 (26.2 bits)