BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.13 - phase: 0
(935 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14210 similar to PIR|A84668|A84668 Argonaute (AGO1)-like prote... 713 0.0
TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO... 568 e-162
TC16141 weakly similar to GB|AAC77862.2|20197419|AC005623 Argona... 241 5e-64
AV407626 230 9e-61
TC13170 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), par... 183 1e-46
AV421492 151 5e-37
TC15276 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), par... 150 7e-37
TC14409 similar to PIR|A84668|A84668 Argonaute (AGO1)-like prote... 147 8e-36
TC14224 similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like protein... 127 6e-30
TC14347 homologue to GB|AAF79718.1|8778710|AC020889 T1N15.2 {Ara... 116 2e-26
TC18984 homologue to UP|AGO1_ARATH (O04379) Argonaute protein, p... 103 1e-22
BP056483 74 8e-14
BP052529 74 1e-13
TC9356 weakly similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like p... 60 2e-09
BP056314 60 2e-09
TC19329 similar to PIR|T52134|T52134 Zwille protein [imported] -... 44 9e-05
AV408107 33 0.27
BP056566 32 0.46
TC9440 similar to UP|Q8LNZ9 (Q8LNZ9) AGO1 homologous protein, pa... 32 0.61
TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%) 30 1.8
>TC14210 similar to PIR|A84668|A84668 Argonaute (AGO1)-like protein
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (40%)
Length = 1525
Score = 713 bits (1840), Expect = 0.0
Identities = 347/404 (85%), Positives = 376/404 (92%), Gaps = 1/404 (0%)
Frame = +2
Query: 532 GLVRDLIKCGGMKGIHVEQPFD-CFEENGQFRRAPPLVRVEKMFEHVQSKLPGAPKFLLC 590
GLVRDLIKC +KGI +++P++ FEENGQFRRAPPLVRVEKMFE +Q +LPGAP FLLC
Sbjct: 17 GLVRDLIKCARLKGIPIDEPYEEIFEENGQFRRAPPLVRVEKMFERIQKELPGAPSFLLC 196
Query: 591 LLSERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNVLLKINAKLGGMNSLLGVE 650
LL ERKNSDLYGPWKKKNLAE+GIVTQCI+PTRVNDQYLTNVL+KINAKLGG+NS+LGVE
Sbjct: 197 LLPERKNSDLYGPWKKKNLAEYGIVTQCISPTRVNDQYLTNVLMKINAKLGGLNSVLGVE 376
Query: 651 HSPSIPIVSKAPTLILGMDVSHGSPGQTEIPSIAAVVSSRQWPLISKYRACVRTQGAKVE 710
+PSIPIVSK PT+ILGMDVSHGSPGQ++IPSIAAVVSSR+WPLISKYRACVRTQ KVE
Sbjct: 377 MNPSIPIVSKVPTIILGMDVSHGSPGQSDIPSIAAVVSSREWPLISKYRACVRTQSPKVE 556
Query: 711 MIDNLFKPVSDTEDEGIIRELLIDFYNSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQI 770
MIDNLFK VS+ EDEGIIRELLIDFY+SSG RKPDNIIIFRDGVSESQFNQVLNIEL+QI
Sbjct: 557 MIDNLFKQVSEKEDEGIIRELLIDFYSSSGKRKPDNIIIFRDGVSESQFNQVLNIELNQI 736
Query: 771 IEACKFLDEKWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFYMCAH 830
IEACKFLDE WNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTV+DNKICHPRN DFYMCAH
Sbjct: 737 IEACKFLDETWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVIDNKICHPRNNDFYMCAH 916
Query: 831 AGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQV 890
AGMIGTSRPTHYHVLLD+IGFSPD+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+Q+
Sbjct: 917 AGMIGTSRPTHYHVLLDDIGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQI 1096
Query: 891 GQFMKFEDKSETSSSHGGSGRDINASPIPQLPKLMDSVCNSMFF 934
GQFMKFEDKS+TSSSHGG A +PQLPKL DSV +SMFF
Sbjct: 1097GQFMKFEDKSDTSSSHGGLTAAGVAPVVPQLPKLQDSVSSSMFF 1228
>TC8758 similar to GB|AAC77862.2|20197419|AC005623 Argonaute (AGO1)-like
protein {Arabidopsis thaliana;} , partial (32%)
Length = 1142
Score = 568 bits (1465), Expect = e-162
Identities = 277/349 (79%), Positives = 313/349 (89%), Gaps = 7/349 (2%)
Frame = +3
Query: 33 NEECLPPPPP--IVPADIEPIKIE-----PQIVKKKLPTKVPMARRGLGSKGAKLPLLTN 85
NE+ +PPPPP IVPAD+EP+K++ P+ VKKKLPT++P+AR+GLGSKG KLPLLTN
Sbjct: 99 NEDLMPPPPPPPIVPADVEPVKVDLLDLPPEPVKKKLPTRLPIARKGLGSKGTKLPLLTN 278
Query: 86 HFKVNVTNTDGYFFQYSVALFYEDGRPVEGKGAGRKILDRVQETYGSELNGKDLAYDGEK 145
HFKV V N+DG+FFQYSVAL YEDGRPVEGKG GRK++D+VQETYGSELNGKD AYDGEK
Sbjct: 279 HFKVTVANSDGHFFQYSVALSYEDGRPVEGKGVGRKVIDKVQETYGSELNGKDFAYDGEK 458
Query: 146 TLFTIGSLAQNKLEFTVVLEDVTSNRNNGNASPDGHGSPNDTDRKRLKKSHRSKTYKVEI 205
TLFTIGSLA+NKLEFTVVLEDV SNRNNGN SPDG S ND+D+KR+++ + SKT+KVEI
Sbjct: 459 TLFTIGSLARNKLEFTVVLEDVISNRNNGNCSPDG-ASTNDSDKKRMRRPYHSKTFKVEI 635
Query: 206 SFASKIPLQAIANALKGHETENYQEAIRVLDIILRQHAAKQGCLLVRQNFFHNDPKNFTD 265
SFA+KIPLQAI NAL+G E+ENYQEAIRVLDIILRQHAAKQGCLLVRQ+FFHNDPKN+ D
Sbjct: 636 SFAAKIPLQAIVNALRGQESENYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNYAD 815
Query: 266 VGGGVLGCRGLHSSFRTTQSGLSLNIDVSTTMIVHPGPVVDFLIANQNVRDPFSLDWNKA 325
VGGGVLGCRG HSSFRTTQSGLSLNIDVSTTMI+ PGPVVDFLIANQNVRDPFSLDW KA
Sbjct: 816 VGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPFSLDWAKA 995
Query: 326 KRTLKNLRITTSPTNQEYKITGLSEMPCKDQLFTLKKRGAVPGEDDTEE 374
KRTLKNLRI SP+NQEYKITGLSE+PCK+Q FT+KK+G GE+D E
Sbjct: 996 KRTLKNLRIKASPSNQEYKITGLSELPCKEQTFTMKKKGGNNGEEDATE 1142
>TC16141 weakly similar to GB|AAC77862.2|20197419|AC005623 Argonaute
(AGO1)-like protein {Arabidopsis thaliana;} , partial
(14%)
Length = 598
Score = 241 bits (614), Expect = 5e-64
Identities = 120/190 (63%), Positives = 145/190 (76%), Gaps = 10/190 (5%)
Frame = +3
Query: 13 LFQLFFLMVMCSVQEMGSQENEEC-LPPPPPIVPADIEPIKIE--------PQIVKKKLP 63
LF F M S + G+ + E LPPPPP++P+D+ P+K E P+ VKKK P
Sbjct: 27 LFTRFISRKMDSFEPDGNGKEESLPLPPPPPVLPSDVVPLKAEEVLPAAPPPEPVKKKTP 206
Query: 64 TKVPMARRGLGSKGAKLPLLTNHFKVNVTNTDGYFFQYSVALFYEDGRPVEGKGAGRKIL 123
++P+ARRGLG+KG K+PLLTNHFKV TN DG+FF YSV YEDGRPVEGKG GRKI+
Sbjct: 207 ARLPIARRGLGTKGTKIPLLTNHFKVTCTNNDGHFFHYSVNFTYEDGRPVEGKGVGRKIM 386
Query: 124 DRVQETYGSELNGKDLAYDGEKTLFTIGSLAQNKLEFTVVLEDVTSNRNNGNAS-PDGHG 182
D+VQETY S+LNGKD AYDGEK+LFTIGSL +NKLE+ VVLEDVTSNRNNGN S P+GHG
Sbjct: 387 DKVQETYQSDLNGKDFAYDGEKSLFTIGSLPRNKLEYEVVLEDVTSNRNNGNCSPPNGHG 566
Query: 183 SPNDTDRKRL 192
N+TD+KR+
Sbjct: 567 EDNETDKKRM 596
>AV407626
Length = 426
Score = 230 bits (586), Expect = 9e-61
Identities = 111/144 (77%), Positives = 128/144 (88%)
Frame = +3
Query: 347 GLSEMPCKDQLFTLKKRGAVPGEDDTEEITVYDYFVNRRKISLQYSADLPCINVGKPKRP 406
G SE+PCK+Q F+L+K+G DD+EE+ VYDYFVN RKI L+YS DLPCINVGKPKRP
Sbjct: 3 GFSELPCKEQTFSLRKKG---DGDDSEEVAVYDYFVNTRKIELRYSGDLPCINVGKPKRP 173
Query: 407 TFVPVELCSLVSLQRYTKALSTLQRSSLVEKSRQKPQERMRVLTDALKTSDYGSEPMLRN 466
TF P+ELC LVSLQRYTKAL+TLQRSSLVEKSRQKPQERM VLTDALK S+YG+EP+L+N
Sbjct: 174 TFFPIELCELVSLQRYTKALTTLQRSSLVEKSRQKPQERMNVLTDALKISNYGAEPLLKN 353
Query: 467 CGISITSGFTQVDGRVLQAPRLKF 490
CGISI++GFTQV+GRVL APRLKF
Sbjct: 354 CGISISNGFTQVEGRVLPAPRLKF 425
>TC13170 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), partial (14%)
Length = 588
Score = 183 bits (465), Expect = 1e-46
Identities = 91/125 (72%), Positives = 104/125 (82%)
Frame = +1
Query: 810 GTVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQR 869
GTV+DN ICHP+++DFYMCAHAG IGTSRPTHYHVL DEIGF+ DDLQELVHSLSYVY R
Sbjct: 1 GTVIDNHICHPKHHDFYMCAHAGAIGTSRPTHYHVLHDEIGFTADDLQELVHSLSYVYPR 180
Query: 870 STTAISVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINASPIPQLPKLMDSVC 929
STTAISVVAPICYA LAA+Q+G FMKF++ ETSSS GS P+PQLP+L +V
Sbjct: 181 STTAISVVAPICYAPLAAAQMGPFMKFDEFCETSSS-PGSLTSAGPIPVPQLPRLH*AVA 357
Query: 930 NSMFF 934
+SMFF
Sbjct: 358 HSMFF 372
>AV421492
Length = 255
Score = 151 bits (381), Expect = 5e-37
Identities = 74/84 (88%), Positives = 79/84 (93%)
Frame = +2
Query: 666 LGMDVSHGSPGQTEIPSIAAVVSSRQWPLISKYRACVRTQGAKVEMIDNLFKPVSDTEDE 725
LGMDVSHGSPGQT+IPSIAAVVSSR+WPLISKYRACVRTQ AKVEMIDNLFK VS+ EDE
Sbjct: 2 LGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRACVRTQSAKVEMIDNLFKQVSEKEDE 181
Query: 726 GIIRELLIDFYNSSGNRKPDNIII 749
GI+RELL+DFY SSG RKPDNIII
Sbjct: 182 GIMRELLLDFYLSSGKRKPDNIII 253
>TC15276 similar to UP|Q9SDG8 (Q9SDG8) ESTs AU068544(C30430), partial (11%)
Length = 695
Score = 150 bits (380), Expect = 7e-37
Identities = 75/119 (63%), Positives = 91/119 (76%)
Frame = +2
Query: 816 KICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRSTTAIS 875
KI HPRNYDFY+CAHAGMIGTSRP HY+VLLDEIGFSPD LQ L+HSLSY QRS+ A S
Sbjct: 2 KIVHPRNYDFYLCAHAGMIGTSRPVHYNVLLDEIGFSPDSLQNLIHSLSYANQRSSIATS 181
Query: 876 VVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINASPIPQLPKLMDSVCNSMFF 934
+VAPI YAH AA+Q+ Q + F++ SETSS+ G IP+LP+L +V ++MFF
Sbjct: 182 IVAPIHYAHHAAAQMRQVLNFDNLSETSSNLDSEG----VVSIPELPRLHSNVKSTMFF 346
>TC14409 similar to PIR|A84668|A84668 Argonaute (AGO1)-like protein
[imported] - Arabidopsis thaliana
{Arabidopsis thaliana;} , partial (9%)
Length = 674
Score = 147 bits (371), Expect = 8e-36
Identities = 73/86 (84%), Positives = 78/86 (89%)
Frame = +2
Query: 850 GFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGS 909
GFSPD+LQELVHSLSYVYQRSTTAISVVAPICYAHLAA+Q+GQFMKFEDKSETSSSHGG
Sbjct: 5 GFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGQFMKFEDKSETSSSHGGL 184
Query: 910 GRDINASPIPQLPKLMDSVCNSMFFV 935
A P+PQLPKL D+VCNSMFFV
Sbjct: 185 SA-AGAVPVPQLPKLQDNVCNSMFFV 259
>TC14224 similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like protein At2g27880,
partial (13%)
Length = 753
Score = 127 bits (320), Expect = 6e-30
Identities = 62/129 (48%), Positives = 87/129 (67%)
Frame = +1
Query: 806 NVPPGTVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSY 865
N+ PGTVVD ICHPR +DFY+ +HAG+ GTSRPTHYHVL DE F+ D+LQ L ++L Y
Sbjct: 79 NIMPGTVVDTSICHPREFDFYLNSHAGIQGTSRPTHYHVLYDENNFTADELQGLTNNLCY 258
Query: 866 VYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINASPIPQLPKLM 925
Y R T ++S+V P YAHLAA + ++ E +SE S+ G+G ++ +LP +
Sbjct: 259 TYARCTRSVSIVPPAYYAHLAAFRARSYI--EGESEMGSASAGAGGATRSNVEIKLPAIK 432
Query: 926 DSVCNSMFF 934
D+V + MF+
Sbjct: 433 DNVKDVMFY 459
>TC14347 homologue to GB|AAF79718.1|8778710|AC020889 T1N15.2 {Arabidopsis
thaliana;} , partial (12%)
Length = 663
Score = 116 bits (290), Expect = 2e-26
Identities = 57/133 (42%), Positives = 80/133 (59%), Gaps = 9/133 (6%)
Frame = +2
Query: 811 TVVDNKICHPRNYDFYMCAHAGMIGTSRPTHYHVLLDEIGFSPDDLQELVHSLSYVYQRS 870
++VD+KICHP +DFY+C+HAG+ GTSRP HYHVL DE F+ D LQ L H+L Y Y R
Sbjct: 44 SLVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGLQSLTHNLCYTYARC 223
Query: 871 TTAISVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINA---------SPIPQL 921
T ++S+V P YAHLAA + +M+ E S + +GR + + + L
Sbjct: 224 TRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSAAAGRGMGGRTTRAPGANAAVRPL 403
Query: 922 PKLMDSVCNSMFF 934
P L ++V MF+
Sbjct: 404 PALKENVKRVMFY 442
>TC18984 homologue to UP|AGO1_ARATH (O04379) Argonaute protein, partial
(22%)
Length = 698
Score = 103 bits (258), Expect = 1e-22
Identities = 58/143 (40%), Positives = 83/143 (57%), Gaps = 3/143 (2%)
Frame = +1
Query: 588 LLCLLSERKNSDLYGPWKKKNLAEFGIVTQCIAPTRV---NDQYLTNVLLKINAKLGGMN 644
LL ++ N LYG K+ + G+V+QC V + QYL NV LKIN K+GG N
Sbjct: 7 LLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRN 186
Query: 645 SLLGVEHSPSIPIVSKAPTLILGMDVSHGSPGQTEIPSIAAVVSSRQWPLISKYRACVRT 704
++L S IP++S PT+I G DV+H PG+ PSIAAVV+S+ +P I+KY V
Sbjct: 187 TVLVDALSRRIPLISDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCA 366
Query: 705 QGAKVEMIDNLFKPVSDTEDEGI 727
Q + E+I +LF ++ + I
Sbjct: 367 QAHRQELIQDLFXTMARSSQRNI 435
Score = 76.6 bits (187), Expect = 2e-14
Identities = 40/82 (48%), Positives = 51/82 (61%)
Frame = +2
Query: 718 PVSDTEDEGIIRELLIDFYNSSGNRKPDNIIIFRDGVSESQFNQVLNIELSQIIEACKFL 777
PV T G+I+ELLI F ++G +KP II +RDGVSE QF QVL EL I +AC L
Sbjct: 419 PVRGTLTGGMIKELLISFRRATG-QKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASL 595
Query: 778 DEKWNPKFLVIVAQKNHHTKFF 799
+ + P +V QK HHT+ F
Sbjct: 596 EPNYQPPVTFVVVQKRHHTRLF 661
>BP056483
Length = 333
Score = 74.3 bits (181), Expect = 8e-14
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 7/70 (10%)
Frame = +1
Query: 33 NEECLPPPP--PIVPADIEPIKIE-----PQIVKKKLPTKVPMARRGLGSKGAKLPLLTN 85
NE+ +PP PIVPAD+EP+ ++ P+ VKKKL + R+GLGSKG KL LLTN
Sbjct: 124 NEDLMPPXXXXPIVPADVEPVNVDLLXXTPEPVKKKLTNLASIGRKGLGSKGTKLALLTN 303
Query: 86 HFKVNVTNTD 95
HFKV V N+D
Sbjct: 304 HFKVTVANSD 333
>BP052529
Length = 394
Score = 73.9 bits (180), Expect = 1e-13
Identities = 39/93 (41%), Positives = 58/93 (61%)
Frame = +3
Query: 37 LPPPPPIVPADIEPIKIEPQIVKKKLPTKVPMARRGLGSKGAKLPLLTNHFKVNVTNTDG 96
L P P V IE ++ +P +K + ++R+G+G+ G ++P+LTN FKV+V D
Sbjct: 135 LSPSSPDVSPSIETVEADP--IKFSI-----ISRQGVGTAGKRIPVLTNLFKVSVNAPDA 293
Query: 97 YFFQYSVALFYEDGRPVEGKGAGRKILDRVQET 129
FFQYSV + ED R +E KG GRK++D V +T
Sbjct: 294 IFFQYSVTICMEDKRVIESKGIGRKLIDSVYQT 392
>TC9356 weakly similar to UP|AGOL_ARATH (Q9SJK3) Argonaute-like protein
At2g27880, partial (10%)
Length = 697
Score = 60.1 bits (144), Expect = 2e-09
Identities = 43/146 (29%), Positives = 66/146 (44%), Gaps = 6/146 (4%)
Frame = +3
Query: 38 PPPPPIVPADIEPIKIEPQIVKKKLPTKVPMA-----RRGLGSKGAKLPLLTNHFKVNVT 92
PPPP VP D ++E ++ + A R G G G K+ + NHF++ V
Sbjct: 249 PPPPSPVPVDALSSEVEQKLALRPAAPSSTKAIRFPDRPGFGRLGKKIQVRANHFQLQVA 428
Query: 93 NTDGYFFQYSVALFYEDGRPVEGKGAGRKILDRVQETYGSELNGKDL-AYDGEKTLFTIG 151
D Y VA+ E + K R+++ ++ + Y + G L +DG K LFT G
Sbjct: 429 ERD--LHHYDVAITPE----ITSKKVTREVVSQLIKMYKESVLGNRLPVFDGRKNLFTAG 590
Query: 152 SLAQNKLEFTVVLEDVTSNRNNGNAS 177
L + EF V LED ++ + S
Sbjct: 591 PLPFSSKEFVVKLEDDRPKASSSSGS 668
>BP056314
Length = 398
Score = 59.7 bits (143), Expect = 2e-09
Identities = 30/49 (61%), Positives = 36/49 (73%)
Frame = -3
Query: 875 SVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINASPIPQLPK 923
SVVAPICYAHLAA+ +G FMKFE +S+TSS+ GG A +P LPK
Sbjct: 396 SVVAPICYAHLAATPIGPFMKFEAQSDTSSTPGGLTAAGVAPVVPPLPK 250
>TC19329 similar to PIR|T52134|T52134 Zwille protein [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(7%)
Length = 623
Score = 44.3 bits (103), Expect = 9e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Frame = +3
Query: 851 FSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAASQVGQFMKFEDKSETSSS 905
F+ D +Q L ++L Y Y R T ++SVV P YAHLAA + + E+ E S+
Sbjct: 3 FTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYAGPEELQENGST 167
>AV408107
Length = 415
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/59 (28%), Positives = 27/59 (44%)
Frame = +3
Query: 768 SQIIEACKFLDEKWNPKFLVIVAQKNHHTKFFQPGSPDNVPPGTVVDNKICHPRNYDFY 826
S I C L ++NPK+ V+ + NHH F P S T++ N + + F+
Sbjct: 6 SSCICNCNNLSGRYNPKYGVVFSSFNHHHSPFSPSSSSKYRFLTLISNHNQYANTFFFF 182
>BP056566
Length = 467
Score = 32.0 bits (71), Expect = 0.46
Identities = 18/35 (51%), Positives = 21/35 (59%)
Frame = -1
Query: 900 SETSSSHGGSGRDINASPIPQLPKLMDSVCNSMFF 934
S+TSS+ GG A +P LPKL DSV SM F
Sbjct: 467 SDTSSNPGGLTAAGVAPVVPPLPKLPDSVTRSMVF 363
>TC9440 similar to UP|Q8LNZ9 (Q8LNZ9) AGO1 homologous protein, partial (5%)
Length = 639
Score = 31.6 bits (70), Expect = 0.61
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Frame = +2
Query: 875 SVVAPICYAHLAASQVGQFMKFEDKSETSSSHGGSGRDINASP---------IPQLPKLM 925
SVV P YAHLAA + +M+ D E SS G G N+S + LP L
Sbjct: 2 SVVPPAYYAHLAAFRARFYME-PDMQENGSS--GDGNTSNSSKGTRVAGECGVKPLPALK 172
Query: 926 DSVCNSMFF 934
++V MF+
Sbjct: 173 ENVKRVMFY 199
>TC10380 similar to UP|Q8S8U2 (Q8S8U2) Ycf1 protein, partial (40%)
Length = 5664
Score = 30.0 bits (66), Expect = 1.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 591 LLSERKNSDLYGPWKKKNLAEFGIVTQCIAPTRVNDQYLTNV 632
++ +++ D++ PWKKK + E + T P R +Y + V
Sbjct: 4403 IIEKKRRIDIFKPWKKKKILEVELET----PNRAKKEYTSRV 4516
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.137 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,324,205
Number of Sequences: 28460
Number of extensions: 235334
Number of successful extensions: 1504
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of query: 935
length of database: 4,897,600
effective HSP length: 99
effective length of query: 836
effective length of database: 2,080,060
effective search space: 1738930160
effective search space used: 1738930160
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC124972.13