BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.11 - phase: 0 /pseudo
(127 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC13048 similar to UP|KADC_ARATH (Q9ZUU1) Probable adenylate kin... 37 0.001
BP042523 34 0.007
AV426828 33 0.015
TC16541 similar to UP|Q9SNJ4 (Q9SNJ4) ESTs AU065232(E60855), par... 32 0.025
TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), pa... 32 0.025
TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (T... 32 0.043
TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase... 30 0.095
BF177891 30 0.16
TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J... 29 0.21
TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {... 29 0.28
TC8104 homologue to UP|WR65_ARATH (Q9LP56) Probable WRKY transcr... 29 0.28
AV408284 28 0.36
TC14899 similar to UP|UMPK_ARATH (O04905) Uridylate kinase (UK)... 28 0.36
AV421390 28 0.36
AV428934 28 0.47
TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulat... 28 0.62
TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%) 27 0.81
CB829689 27 0.81
TC19197 similar to UP|Q9LV51 (Q9LV51) Genomic DNA, chromosome 3,... 27 0.81
CN825067 27 1.1
>TC13048 similar to UP|KADC_ARATH (Q9ZUU1) Probable adenylate kinase 1,
chloroplast precursor (ATP-AMP transphosphorylase) ,
partial (29%)
Length = 469
Score = 36.6 bits (83), Expect = 0.001
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 17 GTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDG-WDDELDSYILNEDLVCDEL 72
G PG GK T ++ L+ + HI GDLV+E+ G EL + LV DE+
Sbjct: 240 GCPGVGKGTYASRLSNLLHVPHIATGDLVREELTSSGPLSTELSEIVKQGQLVSDEI 410
>BP042523
Length = 479
Score = 34.3 bits (77), Expect = 0.007
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 11 PNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHD 52
PN++++G PGTGKTT+ ALA +L N + V E N D
Sbjct: 175 PNLILSGPPGTGKTTSILALAH--ELLGPNCKEAVLELNASD 294
>AV426828
Length = 401
Score = 33.1 bits (74), Expect = 0.015
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHD 52
+ R P++L+ G PGTGK TST LA A +L +++ E N D
Sbjct: 100 ENRLPHLLLYGPPGTGK--TSTILAVARKLYGAQYRNMILELNASD 231
>TC16541 similar to UP|Q9SNJ4 (Q9SNJ4) ESTs AU065232(E60855), partial (41%)
Length = 525
Score = 32.3 bits (72), Expect = 0.025
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 17 GTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDG-WDDELDSYILNEDLVCDEL 72
G+PG GK T ++ L + HI GDLV+ + +G +L + LV DE+
Sbjct: 161 GSPGVGKGTYASRLCTLLGVPHIATGDLVRNELSSNGPLSSQLSEIVNQGKLVSDEI 331
>TC14911 homologue to UP|Q93X55 (Q93X55) Peroxin 6 (Fragment), partial (32%)
Length = 1418
Score = 32.3 bits (72), Expect = 0.025
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +2
Query: 8 RRKPNILVTGTPGTGKTTTSTALAEATQLNHINI 41
R++ +L+ G PGTGKT + A+A LN +++
Sbjct: 317 RKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSV 418
>TC12787 weakly similar to UP|MSP1_YEAST (P28737) MSP1 protein (TAT-binding
homolog 4), partial (20%)
Length = 389
Score = 31.6 bits (70), Expect = 0.043
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 3 KDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYI 62
K + + IL+ G PGTGKT + A+A N INI ++ W E + Y+
Sbjct: 60 KGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINI----SMSSITSKWFGEGEKYV 227
>TC9489 homologue to UP|Q9SEI5 (Q9SEI5) 26S proteasome AAA-ATPase subunit
RPT2a, partial (69%)
Length = 916
Score = 30.4 bits (67), Expect = 0.095
Identities = 15/42 (35%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = +1
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHIN-IGDLVKEKNLHDG 53
+++ G PGTGKT + A+A +T + +G + +K L DG
Sbjct: 493 VILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDG 618
>BF177891
Length = 390
Score = 29.6 bits (65), Expect = 0.16
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 5 SIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINI 41
++ R IL+ G PGTGKT + ALA N I++
Sbjct: 64 NLLRPVKGILLFGPPGTGKTLMAKALATEAGANFISV 174
>TC18707 homologue to PIR|T02901|T02901 MSP1 protein homolog T13J8.110 -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(29%)
Length = 771
Score = 29.3 bits (64), Expect = 0.21
Identities = 13/29 (44%), Positives = 18/29 (61%)
Frame = +3
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINI 41
IL+ G PGTGKT + A+A + IN+
Sbjct: 312 ILLFGPPGTGKTMLAXAIANEAGASFINV 398
>TC15365 homologue to GB|AAP78936.1|32306505|BT009668 At5g19990 {Arabidopsis
thaliana;}, partial (87%)
Length = 1385
Score = 28.9 bits (63), Expect = 0.28
Identities = 15/42 (35%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
Frame = +3
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINI-GDLVKEKNLHDG 53
+L+ G PGTGKT + A+A T I + G + +K + +G
Sbjct: 438 VLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEG 563
>TC8104 homologue to UP|WR65_ARATH (Q9LP56) Probable WRKY transcription
factor 65 (WRKY DNA-binding protein 65), partial (12%)
Length = 604
Score = 28.9 bits (63), Expect = 0.28
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +1
Query: 53 GWDDELDSYILNEDLVCDELEDVM 76
GW D++ S + E +CDE+EDVM
Sbjct: 73 GWFDDVASTGVLESPICDEVEDVM 144
>AV408284
Length = 425
Score = 28.5 bits (62), Expect = 0.36
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +1
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGW 54
+L+ G PGTGKT + A+A+ + IN V+ NL W
Sbjct: 100 VLLYGPPGTGKTMLAKAIAKESGAVFIN----VRISNLMSKW 213
>TC14899 similar to UP|UMPK_ARATH (O04905) Uridylate kinase (UK) (Uridine
monophosphate kinase) (UMP kinase) (UMP/CMP kinase) ,
partial (92%)
Length = 911
Score = 28.5 bits (62), Expect = 0.36
Identities = 22/86 (25%), Positives = 38/86 (43%), Gaps = 6/86 (6%)
Frame = +2
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKEKNLHDGWDDELDSYILNE------D 66
+ V G PG+GK T + + + H+ GDL++ + + + ++ E D
Sbjct: 101 VFVLGGPGSGKGTQCSNIVKHFGYTHLIAGDLLRSEIKSGSENGTMIQNLIKEGKIVPSD 280
Query: 67 LVCDELEDVMDEGGNIVDYHGCDFFP 92
+ + L+ M E GN D D FP
Sbjct: 281 VTINLLQRAMLENGN--DKFLIDGFP 352
>AV421390
Length = 409
Score = 28.5 bits (62), Expect = 0.36
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +2
Query: 13 ILVTGTPGTGKTTTSTALA 31
IL+TG PGTGKT + A+A
Sbjct: 179 ILLTGAPGTGKTLLAKAIA 235
>AV428934
Length = 323
Score = 28.1 bits (61), Expect = 0.47
Identities = 17/45 (37%), Positives = 26/45 (57%)
Frame = +1
Query: 2 VKDSIKRRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVK 46
+K S K K IL+ G PG+GK T S + + L H+ GD+++
Sbjct: 112 LKCSSKPDKRLILI-GPPGSGKGTQSPIIKDEYCLCHLATGDMLR 243
>TC16349 homologue to UP|PRS6_SOLTU (P54778) 26S protease regulatory subunit
6B homolog, partial (65%)
Length = 901
Score = 27.7 bits (60), Expect = 0.62
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHIN-IGDLVKEKNLHDG 53
+L+ G PGTGKT + A+A T I +G +K L +G
Sbjct: 609 VLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEG 734
>TC13255 homologue to UP|Q7XXR9 (Q7XXR9) Katanin, partial (41%)
Length = 532
Score = 27.3 bits (59), Expect = 0.81
Identities = 13/29 (44%), Positives = 17/29 (57%)
Frame = +1
Query: 13 ILVTGTPGTGKTTTSTALAEATQLNHINI 41
IL+ G PGTGKT + A+A + NI
Sbjct: 43 ILLFGPPGTGKTMLAKAVATECKTTFFNI 129
>CB829689
Length = 558
Score = 27.3 bits (59), Expect = 0.81
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 7 KRRKPNILVTGTPGTGKTTTSTALAE 32
+R K N ++ G PG GKT S LA+
Sbjct: 250 RRTKNNPVLIGEPGVGKTAISEGLAQ 327
>TC19197 similar to UP|Q9LV51 (Q9LV51) Genomic DNA, chromosome 3, P1 clone:
MOB24, partial (54%)
Length = 784
Score = 27.3 bits (59), Expect = 0.81
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 8 RRKPNILVTGTPGTGKTTTSTALAEATQLNHINIGDLVKE 47
RR P++ G PGTGKT + L + I D V E
Sbjct: 348 RRPPHMAFLGNPGTGKTMVARILGRLLHMLGILPTDNVTE 467
>CN825067
Length = 687
Score = 26.9 bits (58), Expect = 1.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 12 NILVTGTPGTGKTTTSTALAEATQLNH 38
N+L G PGTGKT + LA + L++
Sbjct: 196 NMLFYGPPGTGKTMAARELARKSGLDY 276
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.316 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,099,016
Number of Sequences: 28460
Number of extensions: 26576
Number of successful extensions: 158
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 127
length of database: 4,897,600
effective HSP length: 80
effective length of query: 47
effective length of database: 2,620,800
effective search space: 123177600
effective search space used: 123177600
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)
Medicago: description of AC124972.11