TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124972.10 - phase: 1 /pseudo
         (135 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC19391 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial...    91  7e-20
TC13354 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (43%)          71  6e-14
TC11176 weakly similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (...    31  0.064
TC19652                                                                27  0.92
TC13788                                                                26  2.7
TC9383 similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), parti...    25  6.0
TC19669                                                                25  6.0
BP066017                                                               24  7.8
BP036115                                                               24  7.8

>TC19391 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial (29%)
          Length = 720

 Score = 90.9 bits (224), Expect = 7e-20
 Identities = 44/55 (80%), Positives = 48/55 (87%)
 Frame = +3

Query: 71  LNLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
           LNLHK AGH VLVYMP G+ AKDIEKMSDEAAA+FAF QLKKILPDASSP+  +V
Sbjct: 15  LNLHKGAGHPVLVYMPAGKLAKDIEKMSDEAAASFAFTQLKKILPDASSPIQYLV 179


>TC13354 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (43%)
          Length = 689

 Score = 71.2 bits (173), Expect = 6e-14
 Identities = 33/59 (55%), Positives = 40/59 (66%)
 Frame = +2

Query: 12  LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYF 70
           L   +I+FEPKL DWK +AI+D+ VG ENK+ L F  VFWPN + L VVA  S  C YF
Sbjct: 512 LKANIIEFEPKLPDWKVSAISDLGVGNENKVALRFDKVFWPNVELLGVVAPTSYACGYF 688


>TC11176 weakly similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (18%)
          Length = 526

 Score = 31.2 bits (69), Expect = 0.064
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 102 AANFAFKQLKKILPDASSPVTIIV 125
           AANF    LKK+ PDAS PV  +V
Sbjct: 3   AANFVMLHLKKMFPDASEPVQYLV 74


>TC19652 
          Length = 693

 Score = 27.3 bits (59), Expect = 0.92
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
 Frame = +1

Query: 35  RVGVENKIILHFKNVFWPNEDFLE-------VVAEISNG----CSYFLNLHKAAGHSV 81
           RVG+  KII  F +VF+P+E  LE       ++++   G    C    N+H A G SV
Sbjct: 424 RVGLC*KIISMFGSVFFPSESILESRSYSHKLLSKRDFGFRINCRIIPNMHYANGSSV 597


>TC13788 
          Length = 582

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 55  DFLEVVAEISNGCSYFLNLHK 75
           DFL  +  + N C  F+NLHK
Sbjct: 491 DFL*FLVSLENNCIGFMNLHK 553


>TC9383 similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), partial (23%)
          Length = 1099

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 19/60 (31%), Positives = 30/60 (49%)
 Frame = -3

Query: 63  ISNGCSYFLNLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVT 122
           IS+  + FLNLH A   S L+ + +      +  +     ++     LK++LP ASS VT
Sbjct: 731 ISSSITGFLNLHNAQSISFLLLLRLFHIPLLLLLLLSVTTSH-----LKRVLPHASSIVT 567


>TC19669 
          Length = 533

 Score = 24.6 bits (52), Expect = 6.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 5   LIHTHARLLTKLIKFEPK 22
           L+H HA  L  L++F+PK
Sbjct: 313 LLHKHANQLITLLQFQPK 260


>BP066017 
          Length = 468

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 66  GCSYFLNLHKAAGHSVLVYMPVGRQAK 92
           GCSY  N+H  +G   + Y+  G   K
Sbjct: 101 GCSYTDNMHGISGFKEIFYLGKGELPK 181


>BP036115 
          Length = 391

 Score = 24.3 bits (51), Expect = 7.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 90  QAKDIEKMSDEAAANFAFKQLKKILPDASSP 120
           Q K+ EK   EAAA    K+ KK++   + P
Sbjct: 300 QKKETEKFEKEAAAKGGKKKKKKVVRARAGP 208


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,183,216
Number of Sequences: 28460
Number of extensions: 24990
Number of successful extensions: 155
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of query: 135
length of database: 4,897,600
effective HSP length: 81
effective length of query: 54
effective length of database: 2,592,340
effective search space: 139986360
effective search space used: 139986360
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)