
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.10 - phase: 1 /pseudo
(135 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19391 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial... 91 7e-20
TC13354 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (43%) 71 6e-14
TC11176 weakly similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (... 31 0.064
TC19652 27 0.92
TC13788 26 2.7
TC9383 similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), parti... 25 6.0
TC19669 25 6.0
BP066017 24 7.8
BP036115 24 7.8
>TC19391 similar to UP|Q8S9L4 (Q8S9L4) At2g43020/MFL8.12, partial (29%)
Length = 720
Score = 90.9 bits (224), Expect = 7e-20
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3
Query: 71 LNLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVTIIV 125
LNLHK AGH VLVYMP G+ AKDIEKMSDEAAA+FAF QLKKILPDASSP+ +V
Sbjct: 15 LNLHKGAGHPVLVYMPAGKLAKDIEKMSDEAAASFAFTQLKKILPDASSPIQYLV 179
>TC13354 similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (43%)
Length = 689
Score = 71.2 bits (173), Expect = 6e-14
Identities = 33/59 (55%), Positives = 40/59 (66%)
Frame = +2
Query: 12 LLTKLIKFEPKLLDWKEAAIADIRVGVENKIILHFKNVFWPNEDFLEVVAEISNGCSYF 70
L +I+FEPKL DWK +AI+D+ VG ENK+ L F VFWPN + L VVA S C YF
Sbjct: 512 LKANIIEFEPKLPDWKVSAISDLGVGNENKVALRFDKVFWPNVELLGVVAPTSYACGYF 688
>TC11176 weakly similar to UP|Q9SHX4 (Q9SHX4) F1E22.18, partial (18%)
Length = 526
Score = 31.2 bits (69), Expect = 0.064
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +3
Query: 102 AANFAFKQLKKILPDASSPVTIIV 125
AANF LKK+ PDAS PV +V
Sbjct: 3 AANFVMLHLKKMFPDASEPVQYLV 74
>TC19652
Length = 693
Score = 27.3 bits (59), Expect = 0.92
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
Frame = +1
Query: 35 RVGVENKIILHFKNVFWPNEDFLE-------VVAEISNG----CSYFLNLHKAAGHSV 81
RVG+ KII F +VF+P+E LE ++++ G C N+H A G SV
Sbjct: 424 RVGLC*KIISMFGSVFFPSESILESRSYSHKLLSKRDFGFRINCRIIPNMHYANGSSV 597
>TC13788
Length = 582
Score = 25.8 bits (55), Expect = 2.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 55 DFLEVVAEISNGCSYFLNLHK 75
DFL + + N C F+NLHK
Sbjct: 491 DFL*FLVSLENNCIGFMNLHK 553
>TC9383 similar to UP|Q9LX02 (Q9LX02) ESTs AU082316(E3368), partial (23%)
Length = 1099
Score = 24.6 bits (52), Expect = 6.0
Identities = 19/60 (31%), Positives = 30/60 (49%)
Frame = -3
Query: 63 ISNGCSYFLNLHKAAGHSVLVYMPVGRQAKDIEKMSDEAAANFAFKQLKKILPDASSPVT 122
IS+ + FLNLH A S L+ + + + + ++ LK++LP ASS VT
Sbjct: 731 ISSSITGFLNLHNAQSISFLLLLRLFHIPLLLLLLLSVTTSH-----LKRVLPHASSIVT 567
>TC19669
Length = 533
Score = 24.6 bits (52), Expect = 6.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 5 LIHTHARLLTKLIKFEPK 22
L+H HA L L++F+PK
Sbjct: 313 LLHKHANQLITLLQFQPK 260
>BP066017
Length = 468
Score = 24.3 bits (51), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 66 GCSYFLNLHKAAGHSVLVYMPVGRQAK 92
GCSY N+H +G + Y+ G K
Sbjct: 101 GCSYTDNMHGISGFKEIFYLGKGELPK 181
>BP036115
Length = 391
Score = 24.3 bits (51), Expect = 7.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 90 QAKDIEKMSDEAAANFAFKQLKKILPDASSP 120
Q K+ EK EAAA K+ KK++ + P
Sbjct: 300 QKKETEKFEKEAAAKGGKKKKKKVVRARAGP 208
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.138 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,183,216
Number of Sequences: 28460
Number of extensions: 24990
Number of successful extensions: 155
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of query: 135
length of database: 4,897,600
effective HSP length: 81
effective length of query: 54
effective length of database: 2,592,340
effective search space: 139986360
effective search space used: 139986360
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)
Medicago: description of AC124972.10