BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124972.1 + phase: 0
(198 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15656 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Ar... 114 9e-27
TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Ara... 110 2e-25
TC16174 similar to UP|Q940N7 (Q940N7) AT4g05150/C17L7_70, partia... 71 1e-13
AW719831 55 8e-09
BU494127 38 0.001
TC10463 similar to UP|Q9LRV7 (Q9LRV7) Gb|AAF04880.1, partial (19%) 35 0.007
AV414139 30 0.28
TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%) 29 0.62
TC8656 similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protei... 29 0.62
AV417333 29 0.62
CN824958 28 1.1
TC18261 similar to UP|WSC2_YEAST (P53832) Cell wall integrity an... 28 1.1
AW720394 28 1.4
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 27 1.8
TC14475 27 1.8
TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting pr... 27 1.8
TC11642 similar to UP|Q9FHL3 (Q9FHL3) Genomic DNA, chromosome 5,... 27 2.4
TC11115 weakly similar to UP|NFL1_HUMAN (Q14494) Nuclear factor ... 27 2.4
AV425658 27 3.1
TC8526 26 4.0
>TC15656 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;}, partial (23%)
Length = 846
Score = 114 bits (286), Expect = 9e-27
Identities = 72/161 (44%), Positives = 97/161 (59%), Gaps = 11/161 (6%)
Frame = +3
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFS---- 58
+VK M +YG KIQPR HD++ SY+GGD KI+ VDRNI F L++KLS +
Sbjct: 168 KVKFMCSYGGKIQPRT---HDNQ-LSYVGGDTKILAVDRNIKFPALLSKLSALCNNCDNP 335
Query: 59 -DVCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLF----PVPIN 113
D+ FKYQL GEDLDALI V N++DL+HMM EYDR+ R S +P+ +R+FLF P+P
Sbjct: 336 ADLTFKYQLPGEDLDALISVTNDDDLDHMMHEYDRLYRASARPSRMRLFLFLPENPLPSA 515
Query: 114 NNKASFDSLASVDSLNSVQ-VFPFEE-YSSPPTTPPHPFMA 152
A N+V +F ++ ++PP P P A
Sbjct: 516 LAPAPVSDQPDPVKPNNVDFLFGLDKPVAAPPPLQPPPLAA 638
>TC8486 similar to GB|AAP68317.1|31711922|BT008878 At5g64430 {Arabidopsis
thaliana;}, partial (25%)
Length = 856
Score = 110 bits (274), Expect = 2e-25
Identities = 68/159 (42%), Positives = 92/159 (57%), Gaps = 7/159 (4%)
Frame = +1
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFMFS---D 59
+ K + +YG KIQPR HD++ SY+GGD KI+ VDRN F ++KL+ + +
Sbjct: 151 KAKFLCSYGGKIQPRT---HDNQ-LSYVGGDTKILAVDRNTKFPTFLSKLAALCDAAPQE 318
Query: 60 VCFKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLF----PVPINNN 115
+ FKYQL GEDLDALI V N++DL H+M EYDR+ R + KP +R+FLF P P++
Sbjct: 319 LTFKYQLPGEDLDALISVTNDDDLEHLMHEYDRLYRPASKPVRMRLFLFSAPNPGPLSQQ 498
Query: 116 KASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMATK 154
+VD L F E+ PP PP F A K
Sbjct: 499 PDPLKPQPNVDFL-----FGLEKGVVPPPQPP-SFAAVK 597
>TC16174 similar to UP|Q940N7 (Q940N7) AT4g05150/C17L7_70, partial (20%)
Length = 491
Score = 71.2 bits (173), Expect = 1e-13
Identities = 41/99 (41%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Frame = +1
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFM-FSDVC 61
RV+ M+++ KI PR HD++ Y+GGD +I+ V+R+ +F L+ KLS + +
Sbjct: 208 RVRFMVSFRGKILPRP---HDNQ-LRYVGGDTRIVAVNRSASFPALLLKLSKLSGMTKIT 375
Query: 62 FKYQLLGEDLDALIPVYNEEDLNHMMFEYDRMCRFSQKP 100
KYQL E+LDALI V +ED+ +M+ EYDR+ +Q P
Sbjct: 376 LKYQLPNEELDALISVTTDEDVENMIDEYDRVAH-NQNP 489
>AW719831
Length = 436
Score = 55.1 bits (131), Expect = 8e-09
Identities = 32/65 (49%), Positives = 41/65 (62%), Gaps = 1/65 (1%)
Frame = +3
Query: 3 RVKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFSDLMAKLSTFM-FSDVC 61
+VKLM +YG KIQPR HD+ +Y+ GD KI+ VDR I +AKL++ SD C
Sbjct: 252 KVKLMCSYGGKIQPRP---HDNN-LTYVSGDTKILAVDRFIKLPAFIAKLTSLTNSSDFC 419
Query: 62 FKYQL 66
KYQL
Sbjct: 420 LKYQL 434
>BU494127
Length = 362
Score = 38.1 bits (87), Expect = 0.001
Identities = 23/59 (38%), Positives = 36/59 (60%), Gaps = 1/59 (1%)
Frame = +2
Query: 58 SDVCFKYQLLGED-LDALIPVYNEEDLNHMMFEYDRMCRFSQKPAWLRVFLFPVPINNN 115
+D+ FKYQL G + + L HMM EYDR+ R S +P+ +R+FLF +P+ ++
Sbjct: 53 ADLTFKYQLPGRGPRRSHLRSPTTMILYHMMHEYDRLYRASARPSRMRLFLF-LPVESS 226
>TC10463 similar to UP|Q9LRV7 (Q9LRV7) Gb|AAF04880.1, partial (19%)
Length = 326
Score = 35.4 bits (80), Expect = 0.007
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 4 VKLMITYGAKIQPRLTSLHDHRRYSYIGGDNKIITVDRNINFS 46
+K + +YG KI PR + + Y+GG +++ VDR+I FS
Sbjct: 150 IKFLCSYGGKILPR----YPDGKLRYLGGHTRVLAVDRSIPFS 266
>AV414139
Length = 309
Score = 30.0 bits (66), Expect = 0.28
Identities = 14/37 (37%), Positives = 21/37 (55%), Gaps = 1/37 (2%)
Frame = +3
Query: 121 SLASVDSLNSVQVFPFEEYSSPPTTP-PHPFMATKDT 156
S S+D ++ + +FP ++SSP P PHP M T
Sbjct: 192 SRQSLDQISFLSLFPHTQFSSPSKLPLPHPIMPLTHT 302
>TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%)
Length = 514
Score = 28.9 bits (63), Expect = 0.62
Identities = 20/45 (44%), Positives = 23/45 (50%)
Frame = +3
Query: 109 PVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMAT 153
P P N++ AS S S S SV V SPPT+PP P AT
Sbjct: 282 PSPANSHMAS--SPPSPTSALSVSVSTPSPAHSPPTSPPAPRSAT 410
>TC8656 similar to UP|Q9LVB8 (Q9LVB8) HSR203J protein-like protein, partial
(35%)
Length = 1114
Score = 28.9 bits (63), Expect = 0.62
Identities = 17/60 (28%), Positives = 27/60 (44%), Gaps = 6/60 (10%)
Frame = +3
Query: 142 PPTTPP--HPFMAT----KDTVTKAEMKKFCGIHVVNDEFEDILKLYLKRNFSKVKDFHG 195
PP TPP HP + T KD + + I++ + L+ +LKR + +HG
Sbjct: 177 PPETPPSPHPTLHTPVISKDLTINQSKQTWARIYIPHKALVSTLRRHLKRRLPLIVFYHG 356
>AV417333
Length = 409
Score = 28.9 bits (63), Expect = 0.62
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +2
Query: 105 VFLFPVPINNNKAS---FDSLASVDSLNSVQVFPFEEYSSPPTTPPHP 149
+ F P NN+ + F + + F F S PP TPPHP
Sbjct: 197 ILFFSKPQNNHSPTLPCFHHIPRSPPHSQTHRFSFPNQSPPPQTPPHP 340
>CN824958
Length = 593
Score = 28.1 bits (61), Expect = 1.1
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 99 KPAWLRVFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSS 141
KP W+R+FLFP P + D +S L Q+ F SS
Sbjct: 165 KPPWIRIFLFPNPSIDRSIE*DYDSSTSQL---QLHQFNSSSS 46
>TC18261 similar to UP|WSC2_YEAST (P53832) Cell wall integrity and stress
response component 2 precursor, partial (5%)
Length = 538
Score = 28.1 bits (61), Expect = 1.1
Identities = 15/42 (35%), Positives = 22/42 (51%)
Frame = +3
Query: 108 FPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHP 149
F + +N+ + S A+ S NS + P SPPT+PP P
Sbjct: 96 FSSALRSNRGNSRSFANKRSANS-KPNPLNAAQSPPTSPPQP 218
>AW720394
Length = 587
Score = 27.7 bits (60), Expect = 1.4
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 102 WLRVFLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPP 147
W R L NNN S SL + SL+S Q P SP T+ P
Sbjct: 116 WRRTKLTKP*QNNNNHSILSLTTEVSLSSPQPLPLFHSPSPTTSTP 253
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 27.3 bits (59), Expect = 1.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = -2
Query: 106 FLFPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPHPFMATKD 155
F P I N+ ++F + +++ S F Y PP +P HP + K+
Sbjct: 464 FNLPPIIQNSSSNFKVILTIEIRTSEDTF-HA*YPRPPKSPLHPMVLAKE 318
>TC14475
Length = 634
Score = 27.3 bits (59), Expect = 1.8
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 85 HMMFEYDRMCRFSQKPAWLRVFLFPVPINN 114
H++F R C S KP + VFLFP+ INN
Sbjct: 335 HLLFISVR*CPSSTKPDF--VFLFPI*INN 252
>TC11310 similar to UP|BAD11331 (BAD11331) BRI1-KD interacting protein 102
(Fragment), partial (13%)
Length = 667
Score = 27.3 bits (59), Expect = 1.8
Identities = 12/41 (29%), Positives = 21/41 (50%)
Frame = -1
Query: 108 FPVPINNNKASFDSLASVDSLNSVQVFPFEEYSSPPTTPPH 148
+P + + +SF S ++ +N +Q P +SSP PH
Sbjct: 265 YPQHLGLSSSSFSSQTGLNLVNHLQPLPCASFSSPFQLSPH 143
>TC11642 similar to UP|Q9FHL3 (Q9FHL3) Genomic DNA, chromosome 5, TAC
clone:K19M13, partial (48%)
Length = 1127
Score = 26.9 bits (58), Expect = 2.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 120 DSLASVDSLNSVQVFPFEEYSSPPTTPPHP 149
DS+ + SL+ V VFP E S P HP
Sbjct: 874 DSVEDISSLSFVVVFPHLEVSCVVVNPVHP 785
>TC11115 weakly similar to UP|NFL1_HUMAN (Q14494) Nuclear factor erythroid 2
related factor 1 (NF-E2 related factor 1) (NFE2-related
factor 1) (Nuclear factor, erythroid derived 2, like 1)
(Transcription factor 11) (Transcription factor HBZ17)
(Transcription factor LCR-F1) (Locus con, partial (3%)
Length = 622
Score = 26.9 bits (58), Expect = 2.4
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Frame = -1
Query: 132 QVFPFEEYSSPPTTPPH----------PFMATKDTVTKAEMKKFCGIHVVNDEFEDIL 179
Q+F F+ + PT PP+ P + V K ++K +HV+N+ DIL
Sbjct: 610 QIFRFDHRKNSPTEPPNEKNTIISQHEPNAKARCQVNKTQLK----VHVINNY*ADIL 449
>AV425658
Length = 280
Score = 26.6 bits (57), Expect = 3.1
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 4/91 (4%)
Frame = +1
Query: 107 LFPVPINNNKASFDSLASVDSLNSVQVFPFEEY----SSPPTTPPHPFMATKDTVTKAEM 162
L+ I N AS +L ++ L + + PF +PPTTP P A K T +
Sbjct: 10 LYLYQIQTNMASKSTLCNIP-LTFLILLPFFASIAFSDTPPTTPVSPGTACKSTPDPSYC 186
Query: 163 KKFCGIHVVNDEFEDILKLYLKRNFSKVKDF 193
K + N D + +K++ S+ + F
Sbjct: 187 KSV--LPTQNGNVYDYGRFSVKKSLSQARKF 273
>TC8526
Length = 698
Score = 26.2 bits (56), Expect = 4.0
Identities = 10/22 (45%), Positives = 15/22 (67%)
Frame = +3
Query: 166 CGIHVVNDEFEDILKLYLKRNF 187
CG++ V E I+ L+LK+NF
Sbjct: 591 CGLNTVQYSVEPIIALHLKKNF 656
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.139 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,639,271
Number of Sequences: 28460
Number of extensions: 53547
Number of successful extensions: 452
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of query: 198
length of database: 4,897,600
effective HSP length: 86
effective length of query: 112
effective length of database: 2,450,040
effective search space: 274404480
effective search space used: 274404480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)
Medicago: description of AC124972.1