BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124970.11 + phase: 0
(211 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP052828 32 0.082
BI420225 27 2.0
TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial... 27 2.0
TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%) 27 2.6
TC9953 similar to GB|CAD35362.1|21535744|ATH490171 FK506 binding... 27 2.6
TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein... 27 3.4
TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1... 27 3.4
TC13290 similar to UP|Q94AD8 (Q94AD8) T10F18_70/T10F18_70 (At5g2... 27 3.4
TC9044 similar to GB|AAR21619.1|38490051|AY457043 TATA-binding p... 26 5.8
TC12805 26 5.8
TC10341 similar to UP|O65850 (O65850) NTH23 protein, partial (23%) 26 5.8
TC16890 26 5.8
CB829244 26 5.8
AW719924 25 7.6
TC19594 similar to UP|C862_ARATH (O23066) Cytochrome P450 86A2 ... 25 10.0
TC18860 similar to UP|Q940L4 (Q940L4) AT3g62590/F26K9_20, partia... 25 10.0
BP041525 25 10.0
TC17381 similar to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolas... 25 10.0
BP046718 25 10.0
>BP052828
Length = 523
Score = 32.0 bits (71), Expect = 0.082
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 162 AFTIPCSIGPVDIGRALCDLGASINLMPLSMMKKLGSRELSPVSVFIE 209
A PC+IG + DLGA IN+MP S+ L L + ++
Sbjct: 59 ALCYPCTIGDNKYENCMLDLGAGINVMPTSIYNILHPGPLQHTGLIVQ 202
>BI420225
Length = 319
Score = 27.3 bits (59), Expect = 2.0
Identities = 14/23 (60%), Positives = 16/23 (68%)
Frame = -1
Query: 5 KDVEVKEVVEKETEHGEVEKESD 27
KD +KE EK EHG VEKE+D
Sbjct: 70 KDPSLKE--EKTAEHGGVEKEAD 8
>TC15357 similar to UP|Q9ZV06 (Q9ZV06) At2g39020 protein, partial (69%)
Length = 1578
Score = 27.3 bits (59), Expect = 2.0
Identities = 16/54 (29%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = +2
Query: 13 VEKET-EHGEVEKESDQGVVENERKKKKGGEKSEKLIDEDSILRKSKSQILKDG 65
V+K T +G+ ++ + ++KKK+GG KSEK + + + R+S + G
Sbjct: 242 VDKPTVTNGDAVEDHKSEKKKKKKKKKRGGGKSEKTLIKSTHGRRSTATRTNSG 403
>TC15394 similar to UP|Q9FFQ8 (Q9FFQ8) Emb|CAB62360.1, partial (16%)
Length = 1093
Score = 26.9 bits (58), Expect = 2.6
Identities = 12/52 (23%), Positives = 27/52 (51%)
Frame = +2
Query: 14 EKETEHGEVEKESDQGVVENERKKKKGGEKSEKLIDEDSILRKSKSQILKDG 65
+++ E + + ES + V ++ KSE+ D+ +K+ +I+K+G
Sbjct: 2 DEKAELSDAKDESQENVAAPHKESDDDESKSEEEEDKSKAQKKTSKKIVKEG 157
>TC9953 similar to GB|CAD35362.1|21535744|ATH490171 FK506 binding protein 1
{Arabidopsis thaliana;} , partial (29%)
Length = 481
Score = 26.9 bits (58), Expect = 2.6
Identities = 18/52 (34%), Positives = 22/52 (41%)
Frame = +2
Query: 129 SRRKPKDDENIALSENCSAILQRKLPPKLKDPGAFTIPCSIGPVDIGRALCD 180
S+ K +D +ALS ILQ PPK PC + G A CD
Sbjct: 173 SQFKRRDAIGLALSVG---ILQAFFPPKPASAAVEAPPCELTAAPSGLAFCD 319
>TC13221 similar to UP|PPAN_ARATH (Q9ASU7) Peter Pan-like protein, partial
(15%)
Length = 521
Score = 26.6 bits (57), Expect = 3.4
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +3
Query: 10 KEVVEKETEHGEVEKESDQGVVENERKKKKGGEKSEKLIDEDSILRKSKSQILKDGDK 67
K + E E SD+G ++E + + GE SE DED + L+D D+
Sbjct: 117 KGLCSGEVLFSEYGNPSDKGKGDDEMQDSEDGEDSEGSEDEDQDGEDPEEASLEDDDE 290
>TC15001 similar to UP|GLE1_YEAST (Q12315) RNA export factor GLE1, partial
(4%)
Length = 988
Score = 26.6 bits (57), Expect = 3.4
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 1 MEVDKDVEVKEVVEKETEHGEVEKESDQGVVENERKKKKGGEKSEKL 47
+E +K+ + E EKE E EKE ++E RKK + ++ E L
Sbjct: 530 LEKEKEAALIEAREKE-EQARKEKEDLDRMLEENRKKIEEAQRREAL 667
>TC13290 similar to UP|Q94AD8 (Q94AD8) T10F18_70/T10F18_70
(At5g21040/T10F18_70), partial (12%)
Length = 540
Score = 26.6 bits (57), Expect = 3.4
Identities = 11/30 (36%), Positives = 15/30 (49%)
Frame = +1
Query: 150 QRKLPPKLKDPGAFTIPCSIGPVDIGRALC 179
+RKLP ++ G T PCS+ V C
Sbjct: 247 RRKLPTEISSKGGRTDPCSVAAVQKNSGSC 336
>TC9044 similar to GB|AAR21619.1|38490051|AY457043 TATA-binding protein
associated factor 4 {Arabidopsis thaliana;} , partial
(5%)
Length = 580
Score = 25.8 bits (55), Expect = 5.8
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = +2
Query: 78 PYPHLAKNKKKEEGQFKKFMQLFSQLQV 105
PYPHL + + + +K + LF QLQV
Sbjct: 68 PYPHLEEVPRMTQKGREKVLLLFLQLQV 151
>TC12805
Length = 702
Score = 25.8 bits (55), Expect = 5.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 8 EVKEVVEKETEHGEVEKESDQGVVENERKKKKGGEKSEKL 47
E+ + +EK E ++ V ++E KKK+GG + K+
Sbjct: 55 EIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKM 174
>TC10341 similar to UP|O65850 (O65850) NTH23 protein, partial (23%)
Length = 801
Score = 25.8 bits (55), Expect = 5.8
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -3
Query: 14 EKETEHGEVEKESDQGVVENERKKKKGGEKSEK 46
EK +HGEV + +GV R+ K+GG EK
Sbjct: 118 EKRRKHGEVWRI*REGVSGGGRE*KEGGRGLEK 20
>TC16890
Length = 965
Score = 25.8 bits (55), Expect = 5.8
Identities = 26/105 (24%), Positives = 49/105 (45%), Gaps = 13/105 (12%)
Frame = +2
Query: 16 ETEHGEVEKESDQGVVEN--ERKKKK-----------GGEKSEKLIDEDSILRKSKSQIL 62
+T+H E EKE + EN E KKK G +++ +L+ ++S SQ+
Sbjct: 50 KTKHKEKEKEKGKEREENKEENSKKKGF*LLNKMQGGGEQQNNQLVVQNSGSLSFSSQMS 229
Query: 63 KDGDKPQVIPSYVKLPYPHLAKNKKKEEGQFKKFMQLFSQLQVNI 107
K+ + ++ L+ K KEE +K M++ ++Q+ +
Sbjct: 230 KEDE---------EMSRSALSNFKAKEEEIERKKMEVREKVQLQL 337
>CB829244
Length = 478
Score = 25.8 bits (55), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 12 VVEKETEHGEVEKESDQGVVENERKK 37
V +E E G+ +E D+GV ENE ++
Sbjct: 246 VFVEEEERGKEAEEEDEGVEENETQR 169
>AW719924
Length = 505
Score = 25.4 bits (54), Expect = 7.6
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -1
Query: 30 VVENERKKKKGGEKSEK 46
VVENE+KKKK +K +K
Sbjct: 67 VVENEKKKKKKKKKKKK 17
>TC19594 similar to UP|C862_ARATH (O23066) Cytochrome P450 86A2 , partial
(14%)
Length = 579
Score = 25.0 bits (53), Expect = 10.0
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = -1
Query: 15 KETEHGEVEKESDQGVVENERKKKKGGEKSEKL 47
+E G+ + + ERKKK GG+++E++
Sbjct: 159 EEVLRGKGRERKSDFIEGKERKKKNGGDEAERV 61
>TC18860 similar to UP|Q940L4 (Q940L4) AT3g62590/F26K9_20, partial (29%)
Length = 606
Score = 25.0 bits (53), Expect = 10.0
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +3
Query: 70 VIPSYVKLPYP-HLAKNKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMP 117
++P YP H+A+ K G F+ L +Q + P GE L P
Sbjct: 447 IVPRAFSCKYPDHVARLLKAVNGNFRNHPCLNNQKLLYAPMGELLILQP 593
>BP041525
Length = 393
Score = 25.0 bits (53), Expect = 10.0
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = -3
Query: 43 KSEKLIDEDSILRKSKSQIL--KDGDKPQVIPSYVKL 77
K+ +++ + +RK + Q ++G+ P+V+PS+ KL
Sbjct: 172 KTTEVVHREKRIRKVRMQGAGSRNGETPEVLPSHTKL 62
>TC17381 similar to UP|AAQ93070 (AAQ93070) 3-ketoacyl-CoA thiolase ,
partial (39%)
Length = 547
Score = 25.0 bits (53), Expect = 10.0
Identities = 9/19 (47%), Positives = 12/19 (62%)
Frame = -1
Query: 157 LKDPGAFTIPCSIGPVDIG 175
L DPGA T+P + P +G
Sbjct: 361 LSDPGASTVPTIMSPTSLG 305
>BP046718
Length = 378
Score = 25.0 bits (53), Expect = 10.0
Identities = 20/84 (23%), Positives = 35/84 (40%)
Frame = -2
Query: 83 AKNKKKEEGQFKKFMQLFSQLQVNIPFGEALDQMPVYAKFMKEMLTSRRKPKDDENIALS 142
+K K +EE + L +Q A DQ+P + +K + +D N +
Sbjct: 377 SKGKXQEEKEGSPLPSLAAQALEKDYQPRAPDQLPQLTRALKSLTIVIMMMQDFLNSIVM 198
Query: 143 ENCSAILQRKLPPKLKDPGAFTIP 166
+ A + LPP ++ P F+ P
Sbjct: 197 *SLFAPFLKLLPPLIRTPLPFSSP 126
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.313 0.134 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,839,599
Number of Sequences: 28460
Number of extensions: 32918
Number of successful extensions: 169
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of query: 211
length of database: 4,897,600
effective HSP length: 86
effective length of query: 125
effective length of database: 2,450,040
effective search space: 306255000
effective search space used: 306255000
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)
Medicago: description of AC124970.11