Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124968.5 - phase: 0 
         (732 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11041 weakly similar to UP|Q93ZL7 (Q93ZL7) At1g48280/F11A17_25...   162  2e-40
TC12050 weakly similar to GB|BAC55960.1|28071265|AB087408 actin ...   107  5e-24
TC9442 similar to GB|BAC55960.1|28071265|AB087408 actin binding ...    95  5e-20
TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)             82  3e-16
BP030165                                                               47  8e-06
TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)         43  2e-04
TC10928 weakly similar to PIR|G96668|G96668 protein F1N19.7 [imp...    40  0.001
TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.3...    39  0.002
BI418821                                                               39  0.002
AV409412                                                               39  0.003
TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1...    39  0.004
TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), part...    39  0.004
BP030058                                                               39  0.004
CN825698                                                               39  0.004
TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, ...    39  0.004
TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR...    38  0.007
TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing fact...    37  0.009
TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransfer...    37  0.009
TC17863 homologue to PIR|S44027|S44027 thioredoxin-disulfide red...    37  0.009
TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial ...    37  0.009

>TC11041 weakly similar to UP|Q93ZL7 (Q93ZL7) At1g48280/F11A17_25, partial
           (86%)
          Length = 920

 Score =  162 bits (410), Expect = 2e-40
 Identities = 76/151 (50%), Positives = 108/151 (71%)
 Frame = +1

Query: 578 ELGFLVDERAVLKHFDWPEKKADTLREAAFGYQDLKKLESEVSSYKDDPRLPCDIALKKM 637
           EL  L DERAVLKHF WPEKKAD +REAA  Y++LK LE E+SS+KDD  +PC  +L+KM
Sbjct: 1   ELSTLADERAVLKHFKWPEKKADAMREAAVEYRELKMLEQEISSFKDDLDIPCGASLRKM 180

Query: 638 VALSEKMERTVYTLLRTRDSLMRNCKEFQIPVEWMLDNGIIGKIKLGSVKLAKKYMKRVA 697
             L +K ER++  L++ R S +R+ + + IP  WMLD+G++ KIK  S+ L K YMKR+ 
Sbjct: 181 ACLLDKSERSIQRLIKLRSSAIRSYQVYNIPTAWMLDSGMMSKIKQASMTLVKMYMKRLT 360

Query: 698 IEVQTKSAFDKDPAMDYMVLQGVRFAFRIHQ 728
           IE+++    D++ + D ++LQGV FA++ HQ
Sbjct: 361 IELESIRNSDRESSQDSLLLQGVHFAYKAHQ 453


>TC12050 weakly similar to GB|BAC55960.1|28071265|AB087408 actin binding
           protein {Arabidopsis thaliana;} , partial (7%)
          Length = 492

 Score =  107 bits (268), Expect = 5e-24
 Identities = 51/59 (86%), Positives = 55/59 (92%)
 Frame = +3

Query: 670 EWMLDNGIIGKIKLGSVKLAKKYMKRVAIEVQTKSAFDKDPAMDYMVLQGVRFAFRIHQ 728
           EWMLDNGIIGKIK+GSVKLA  YMKRVA+E+Q KSA DKDPAMDYM+LQGVRFAFRIHQ
Sbjct: 3   EWMLDNGIIGKIKIGSVKLAXNYMKRVAMELQAKSALDKDPAMDYMLLQGVRFAFRIHQ 179


>TC9442 similar to GB|BAC55960.1|28071265|AB087408 actin binding protein
           {Arabidopsis thaliana;} , partial (9%)
          Length = 601

 Score = 94.7 bits (234), Expect = 5e-20
 Identities = 43/73 (58%), Positives = 56/73 (75%)
 Frame = +3

Query: 656 DSLMRNCKEFQIPVEWMLDNGIIGKIKLGSVKLAKKYMKRVAIEVQTKSAFDKDPAMDYM 715
           D  +   KEF IPV W+LD+G++GKIKL SV+LAKKYMKRV  E+   S  +K+PA +++
Sbjct: 3   DLAISRYKEFGIPVNWLLDSGVVGKIKLSSVQLAKKYMKRVTSELDALSGSEKEPAREFL 182

Query: 716 VLQGVRFAFRIHQ 728
            LQGVRFAFR+HQ
Sbjct: 183 TLQGVRFAFRVHQ 221


>TC19330 similar to UP|Q96258 (Q96258) AR791, partial (11%)
          Length = 507

 Score = 82.0 bits (201), Expect = 3e-16
 Identities = 49/148 (33%), Positives = 82/148 (55%)
 Frame = +2

Query: 153 ECRKNQSEVDELVKKVALLEEEKSGLSEQLVALSRSCGLERQEEDKDGSTQNLELEVVEL 212
           E  +N+ ++  L ++V+ L++ +S          ++   +++ E K    ++LE E  +L
Sbjct: 50  EAEQNKEQIINLKQRVSKLQDLES----------QATASDQEIETKLRRLKDLEAEAEQL 199

Query: 213 RRLNKELHMQKRNLTCRLSSMESQLSCSDNSSESDIVAKFKAEASLLRLTNEDLSKQVEG 272
           R+ N  L M   +L  RL S +   +      E+D +   + E   LRL NE L+K+VE 
Sbjct: 200 RKTNLRLQMDNSDLARRLDSTQILANAVLEDPEADAL---REEGERLRLENEGLTKEVEQ 370

Query: 273 LQTSRLNEVEELAYLRWVNSCLRTELKN 300
           LQ  R ++VEEL YLRW+N+CLR E++N
Sbjct: 371 LQADRCSDVEELVYLRWINACLRHEMRN 454


>BP030165 
          Length = 438

 Score = 47.4 bits (111), Expect = 8e-06
 Identities = 23/44 (52%), Positives = 32/44 (72%)
 Frame = -2

Query: 685 SVKLAKKYMKRVAIEVQTKSAFDKDPAMDYMVLQGVRFAFRIHQ 728
           SVKLA KYMKRV+ E++T       P  + +++QGV+FAFR+HQ
Sbjct: 434 SVKLAMKYMKRVSAELETVGG---GPEEEELIVQGVKFAFRVHQ 312


>TC18762 similar to UP|Q9VVG2 (Q9VVG2) CG13731-PA, partial (3%)
          Length = 759

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 32/101 (31%), Positives = 47/101 (45%), Gaps = 2/101 (1%)
 Frame = +2

Query: 389 SSEEEVSVLSKRRQSNCFDSFECLKEIEKESVPMPLFVQQCALEKRALRIPNPP-PRPSC 447
           S + E  V++K+RQ       +C  + +    P P+  +Q    K A R+P PP P  + 
Sbjct: 29  SQQMEAVVVAKQRQ------LKCTSQPKYPKYPPPITKRQ-QQTKPAARLPPPPLPTTTT 187

Query: 448 SISSKTKQECSAQVQPPPPPP-PPPPPMSFASRGNTAMVKR 487
           +  S +      +  PPPP P P PPP + AS   TA   R
Sbjct: 188 AAPSPSPSTTKTKNSPPPPSPTPKPPPPTRASTTTTATTWR 310


>TC10928 weakly similar to PIR|G96668|G96668 protein F1N19.7 [imported] -
           Arabidopsis thaliana {Arabidopsis thaliana;}, partial
           (29%)
          Length = 590

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 22/44 (50%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 439 PNPPPRPSCSISSKTKQECSAQVQPPPPPPPP--PPPMSFASRG 480
           P PP RP+ S S    Q  SA   PPPPPPPP  P P+S    G
Sbjct: 330 PTPPTRPNTSPS----QTPSAAAPPPPPPPPPAAPSPLSETRSG 211



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
 Frame = -3

Query: 439 PNPPPRPSCSIS--SKTKQECSAQVQPPP---PPPPPPP---PMSFASRGNTAMVKRAPQ 490
           P PPP P  + S  S+T+       +PPP   PP PP P   P + +S   T   K  P+
Sbjct: 270 PPPPPPPPAAPSPLSETRSGAPRHARPPPLYAPPAPPSPGCNPRTSSSLHATTSCKSPPR 91


>TC13980 similar to UP|Q9SGT0 (Q9SGT0) T6H22.18 protein (F14J16.33), partial
           (12%)
          Length = 565

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 31/106 (29%), Positives = 42/106 (39%), Gaps = 22/106 (20%)
 Frame = +2

Query: 406 FDSFECLKEIEKESVPMPLFVQQCALEKRALRIPNPPPRPSCSISSKTKQECSA------ 459
           F     + ++E + +P P      A    +L IPNPP   + S +SKT   CS       
Sbjct: 194 FPETHTVHDLELQWLP-PASTTPSATRASSLGIPNPP---TSSSASKTPSPCSPPTSSSP 361

Query: 460 ----------------QVQPPPPPPPPPPPMSFASRGNTAMVKRAP 489
                           Q QP  PPPPPPPP S  +  +   +  AP
Sbjct: 362 TGSSSHSTSNPPHPPPQQQPFSPPPPPPPPPSPTAPSSHPRLPAAP 499


>BI418821 
          Length = 614

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 17/36 (47%), Positives = 22/36 (60%), Gaps = 2/36 (5%)
 Frame = -3

Query: 441 PPPRPSCSISSKTKQEC--SAQVQPPPPPPPPPPPM 474
           PPP P   +  ++   C  S Q+  PPPPPPPPPP+
Sbjct: 465 PPPPPLLLLRWQSLARCPVSPQL*QPPPPPPPPPPL 358


>AV409412 
          Length = 426

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 18/42 (42%), Positives = 20/42 (46%)
 Frame = +1

Query: 441 PPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFASRGNT 482
           P P PS S SS T         PP  PPPPPPP + +    T
Sbjct: 292 PSPSPSPSTSSATSPPTPPPSSPPSSPPPPPPPSTSSPPSTT 417



 Score = 36.6 bits (83), Expect = 0.015
 Identities = 22/54 (40%), Positives = 27/54 (49%), Gaps = 6/54 (11%)
 Frame = +1

Query: 435 ALRIPNPPPRPSCSISSKTKQECSAQVQPPPPP------PPPPPPMSFASRGNT 482
           +L +P+P P PS S         SA   P PPP      PPPPPP S +S  +T
Sbjct: 280 SLSLPSPSPSPSTS---------SATSPPTPPPSSPPSSPPPPPPPSTSSPPST 414



 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 452 KTKQECSAQVQPPPPPPPPPPPMSF 476
           K+ Q+  +   PP  PPPPPPP  F
Sbjct: 34  KSLQKPISAAAPPCHPPPPPPPPYF 108


>TC8967 similar to UP|FXGA_HUMAN (P55316) Forkhead box protein G1A
           (Forkhead-related protein FKHL2) (Transcription factor
           BF-2) (Brain factor 2) (BF2) (HFK2), partial (6%)
          Length = 1032

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 26/73 (35%), Positives = 33/73 (44%), Gaps = 4/73 (5%)
 Frame = +2

Query: 441 PPPRPSCSISSKTKQECSAQVQPPPPPPPPP----PPMSFASRGNTAMVKRAPQVVELYH 496
           PP R + S SS      +    PPPPPPPPP    P  S AS  +T+  +    +V    
Sbjct: 80  PPNRTTASHSSPNP*SLAPPPPPPPPPPPPPPRRSPTASCASPPSTSKARSTT*LVSPAT 259

Query: 497 SLMKRDSRRDSSS 509
              K  S R SS+
Sbjct: 260 PSSKPSSTRASST 298


>TC8484 similar to UP|Q9XGP1 (Q9XGP1) ESTs AU070372(S13446), partial (76%)
          Length = 1121

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 32/96 (33%), Positives = 39/96 (40%)
 Frame = +1

Query: 439 PNPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFASRGNTAMVKRAPQVVELYHSL 498
           PN PP PS S  +      S     PPPP PPP P +  S          P   +   SL
Sbjct: 178 PNSPPSPSSSTVATPNPSDSH----PPPPSPPPSPSATNSLNPPYPTSTTPARSKPSPSL 345

Query: 499 MKRDSRRDSSSGGLSDAPDVADVRSSMIGEIENRSS 534
                RR SSS   + +P +A  RS+  G   N  S
Sbjct: 346 NSPRGRRQSSSPSPARSPRLAR-RSTSPGSWRNPPS 450


>BP030058 
          Length = 455

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 15/34 (44%), Positives = 17/34 (49%)
 Frame = -1

Query: 440 NPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPP 473
           +PPP P           C +   PPP PPPPPPP
Sbjct: 413 DPPPPPPSPSPPPPPLPCPSPPPPPPSPPPPPPP 312



 Score = 35.8 bits (81), Expect = 0.025
 Identities = 17/43 (39%), Positives = 19/43 (43%)
 Frame = -1

Query: 436 LRIPNPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFAS 478
           L  P+PPP P                 PPPPPPP PPP  + S
Sbjct: 368 LPCPSPPPPPP---------------SPPPPPPPSPPPPKYPS 285



 Score = 32.3 bits (72), Expect = 0.28
 Identities = 15/54 (27%), Positives = 23/54 (41%)
 Frame = -1

Query: 439 PNPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFASRGNTAMVKRAPQVV 492
           P+PPP P   +   +         PPPPP PPPP      +    +    P+++
Sbjct: 389 PSPPPPP---LPCPSPPPPPPSPPPPPPPSPPPPKYPSCPQNCNPLSPPPPRII 237



 Score = 30.0 bits (66), Expect = 1.4
 Identities = 10/18 (55%), Positives = 11/18 (60%)
 Frame = -1

Query: 457 CSAQVQPPPPPPPPPPPM 474
           C     PPP P PPPPP+
Sbjct: 419 CGDPPPPPPSPSPPPPPL 366


>CN825698 
          Length = 704

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 17/35 (48%), Positives = 19/35 (53%)
 Frame = +1

Query: 440 NPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPM 474
           +PPP PS           SA   PPPPPPPPPP +
Sbjct: 100 SPPPSPS-----------SASAPPPPPPPPPPPSL 171


>TC11625 weakly similar to UP|O81015 (O81015) At2g26920 protein, partial
           (8%)
          Length = 410

 Score = 38.5 bits (88), Expect = 0.004
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 446 SCSISSKTKQECSAQVQPPPPPPPPPPPMS 475
           S S+S   +   S  + PPPPPPPPPPP S
Sbjct: 345 SLSLSLHRRFSHSTVIPPPPPPPPPPPPPS 256



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 463 PPPPPPPPPPPMSFASRGNT 482
           PPPPPPPPPP  +  S   T
Sbjct: 288 PPPPPPPPPPSTTLLSLSET 229



 Score = 33.5 bits (75), Expect = 0.12
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -3

Query: 446 SCSISSKTKQECSAQVQPPPPPPPPPPP 473
           S S+S    +  S     PPPPPPPPPP
Sbjct: 351 SLSLSLSLHRRFSHSTVIPPPPPPPPPP 268


>TC11095 similar to PIR|T05112|T05112 splicing factor 9G8-like SR protein
           RSZp22 [validated] -                Arabidopsis thaliana
           {Arabidopsis thaliana;}, partial (89%)
          Length = 912

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 19/95 (20%)
 Frame = -2

Query: 439 PNPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPM-------------------SFASR 479
           P PP RP                 P PPPPPPPPP+                   S ASR
Sbjct: 359 PPPPERPP----------------PRPPPPPPPPPLEL*ESSTLQPFLPSNSRMASCASR 228

Query: 480 GNTAMVKRAPQVVELYHSLMKRDSRRDSSSGGLSD 514
            ++  +K  P  +    +L      R+SSS  LSD
Sbjct: 227 RSSKSIKA*PGGLRATQTLRITPKTRNSSSRSLSD 123


>TC12355 similar to UP|PR18_HUMAN (Q99633) Pre-mRNA splicing factor 18
           (PRP18 homolog) (hPRP18), partial (8%)
          Length = 563

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 35/135 (25%), Positives = 52/135 (37%), Gaps = 8/135 (5%)
 Frame = +1

Query: 413 KEIEKESVPMPLFVQQCALEKRALRIPNPPPRPSCSISSKTKQECSAQVQP--------P 464
           +   K + P+P        +K A R  +  PR + + S  +  + SA  +P        P
Sbjct: 82  RSFSKNANPLP--------KKPAARNSSSAPRSNRNKSRNSANKRSANWKPNL*NAPPPP 237

Query: 465 PPPPPPPPPMSFASRGNTAMVKRAPQVVELYHSLMKRDSRRDSSSGGLSDAPDVADVRSS 524
           PPPPP PPP    SR +T              SL K+ S   +SS   S +        S
Sbjct: 238 PPPPPTPPPHPPTSRTSTTS-----------SSLNKKSSAASASSSSPSPSSAKTTTPGS 384

Query: 525 MIGEIENRSSHLLAI 539
            +    +R   L +I
Sbjct: 385 TVSSTFSRPGSLRSI 429


>TC8984 similar to UP|Q8LBA3 (Q8LBA3) Phosphoserine aminotransferase,
           partial (25%)
          Length = 563

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 27/68 (39%), Positives = 29/68 (41%), Gaps = 9/68 (13%)
 Frame = +1

Query: 451 SKTKQECSAQVQPPPPPPPP--PPPMSFASRGN-------TAMVKRAPQVVELYHSLMKR 501
           SK     S+   PPPPPPPP  PPP S  S  N       T   K  PQ+          
Sbjct: 91  SKPPPTTSSTTTPPPPPPPPSAPPPPSNPSPSNAPPS*SPTRPTKPNPQIGSSTSPPAPP 270

Query: 502 DSRRDSSS 509
            SRR SSS
Sbjct: 271 PSRRTSSS 294



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 16/49 (32%), Positives = 21/49 (42%)
 Frame = +1

Query: 440 NPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFASRGNTAMVKRA 488
           N PP  S +  +K   +  +   PP PPP      S  SR +T  V  A
Sbjct: 187 NAPPS*SPTRPTKPNPQIGSSTSPPAPPPSRRTSSSRPSRSSTTGVDPA 333


>TC17863 homologue to PIR|S44027|S44027 thioredoxin-disulfide reductase  2
           [validated] -                Arabidopsis thaliana
           {Arabidopsis thaliana;}  , partial (19%)
          Length = 334

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 19/41 (46%), Positives = 21/41 (50%)
 Frame = +3

Query: 435 ALRIPNPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMS 475
           AL +P PPP    + SSK     S  V PP PPP  PP  S
Sbjct: 81  ALPLPPPPPPWLTTRSSKPSSASSEAVPPPTPPPSTPPAPS 203



 Score = 34.3 bits (77), Expect = 0.073
 Identities = 17/61 (27%), Positives = 29/61 (46%)
 Frame = +3

Query: 423 PLFVQQCALEKRALRIPNPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFASRGNT 482
           P  + Q A     + +P PPP P    +  +K   ++    PPP PPP  P + +S  ++
Sbjct: 39  PNSLPQRATSSVLVALPLPPPPPPWLTTRSSKPSSASSEAVPPPTPPPSTPPAPSSNQSS 218

Query: 483 A 483
           +
Sbjct: 219 S 221



 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
 Frame = +3

Query: 438 IPNPPPRPSCSISSKTKQECSAQVQPPPPPP---PPPPPMS 475
           +P P P PS   +  + Q  S    P   PP    PPPP S
Sbjct: 159 VPPPTPPPSTPPAPSSNQSSSKAGWPTTSPPAANSPPPPTS 281


>TC8573 similar to UP|Q9SIH5 (Q9SIH5) At2g36090 protein, partial (17%)
          Length = 515

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 18/42 (42%), Positives = 20/42 (46%)
 Frame = +3

Query: 441 PPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFASRGNT 482
           PPP P  ++ S       A   P  PPP PPPP S AS   T
Sbjct: 138 PPPSPPSTLISSNPTSLLASTAPL*PPPLPPPPTSAASAPKT 263



 Score = 32.7 bits (73), Expect = 0.21
 Identities = 18/51 (35%), Positives = 24/51 (46%)
 Frame = +3

Query: 439 PNPPPRPSCSISSKTKQECSAQVQPPPPPPPPPPPMSFASRGNTAMVKRAP 489
           P PP  PS  ISS      ++     PPP PPPP  + ++    +  K AP
Sbjct: 135 PPPPSPPSTLISSNPTSLLASTAPL*PPPLPPPPTSAASAPKTPSGGKSAP 287



 Score = 28.5 bits (62), Expect = 4.0
 Identities = 19/56 (33%), Positives = 23/56 (40%), Gaps = 3/56 (5%)
 Frame = +3

Query: 439 PNPPPRPSCSISSKTKQECSAQVQPPPPPP---PPPPPMSFASRGNTAMVKRAPQV 491
           P P P P  S +S  K     +  PP  PP   P P P S  S   TA+    P +
Sbjct: 213 PPPLPPPPTSAASAPKTPSGGKSAPPRGPPSNNP*PTPSSPPSPPPTALSSPTPSL 380


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.312    0.128    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,077,569
Number of Sequences: 28460
Number of extensions: 253510
Number of successful extensions: 11733
Number of sequences better than 10.0: 666
Number of HSP's better than 10.0 without gapping: 3395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6715
length of query: 732
length of database: 4,897,600
effective HSP length: 97
effective length of query: 635
effective length of database: 2,136,980
effective search space: 1356982300
effective search space used: 1356982300
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)


Medicago: description of AC124968.5