TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124967.6 - phase: 0 /pseudo
         (492 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC18662 similar to UP|Q94A27 (Q94A27) At3g14201 (At3g14201/at3g1...   301  e-105
AV764839                                                              299  6e-82
BP032290                                                              182  1e-46
TC14704                                                                30  0.90
TC16377 similar to UP|PRO6_HEVBR (Q9LEI8) Profilin 6 (Pollen all...    29  2.0
AV424892                                                               29  2.0
AU251976                                                               27  9.9
BP046819                                                               27  9.9

>TC18662 similar to UP|Q94A27 (Q94A27) At3g14201 (At3g14201/at3g14201) (SAC
           domain protein 2), partial (17%)
          Length = 787

 Score =  301 bits (772), Expect(3) = e-105
 Identities = 146/174 (83%), Positives = 158/174 (89%), Gaps = 3/174 (1%)
 Frame = +2

Query: 220 SNENHSAKPP---RLQNGVLRTNCIDCLDRTNVAQYAYGLAAIGHQLHSLGIIEHPKIDL 276
           SN NH  KP    RLQ GVLRTNCIDCLDRTNVAQYAYGLAA+G+QLH+LG+I+HP+IDL
Sbjct: 2   SNANHCVKPQMLHRLQRGVLRTNCIDCLDRTNVAQYAYGLAALGNQLHALGVIDHPRIDL 181

Query: 277 DDPVANDLMQFYERMGDTLAHQYGGSAAHNKIFSARRGQWRAATQSQEFFRTLQRYYSNA 336
           DDPVA+DLM+FYERMGDTLAHQYGGSAAHNKIFS RRGQWRAATQSQEFFRTLQRYYSNA
Sbjct: 182 DDPVADDLMKFYERMGDTLAHQYGGSAAHNKIFSERRGQWRAATQSQEFFRTLQRYYSNA 361

Query: 337 WMDAEKQDAINVFLGHFQPQQDKPALWELGSDQHYDTGRIGDDDAS*VIFQKIF 390
           +MDA KQDAINVFLGHFQPQ  KPALWELGSDQHYDTGR+GDDDA   IF++ F
Sbjct: 362 YMDAVKQDAINVFLGHFQPQLGKPALWELGSDQHYDTGRLGDDDAR-SIFKRSF 520



 Score = 87.8 bits (216), Expect(3) = e-105
 Identities = 46/66 (69%), Positives = 52/66 (78%)
 Frame = +1

Query: 384 VIFQKIFLRWKHSS*QFYTYASFKCQGRKILKPRFTRPIRRREQGLL*VLT*NIYY*N*E 443
           V FQKI LRWKHSS* FYTY S KCQ R++LKP FTRPI R++Q  L V+T*NI+Y  *E
Sbjct: 499 VDFQKILLRWKHSS*NFYTYVSSKCQARELLKPSFTRPITRKKQSSLRVIT*NIFY--*E 672

Query: 444 *HFIFK 449
           *H IFK
Sbjct: 673 *HCIFK 690



 Score = 31.6 bits (70), Expect(3) = e-105
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 449 KKERCAESHHIYYSEHGD 466
           ++ER  E  HIYYSEHGD
Sbjct: 734 QRERSLEGDHIYYSEHGD 787


>AV764839 
          Length = 526

 Score =  299 bits (766), Expect = 6e-82
 Identities = 148/161 (91%), Positives = 155/161 (95%)
 Frame = +2

Query: 3   RYLRRGVNEKGRVANDVETEQIVFEDVPEGLPIKISSVIQNRGSIPLFWSQETSRLNIKP 62
           RYLRRGVNEKGRV NDVETEQ+VFE VPEGLPIKISS+IQN GSIPLFWSQETSRLNIKP
Sbjct: 44  RYLRRGVNEKGRVPNDVETEQMVFEHVPEGLPIKISSIIQNLGSIPLFWSQETSRLNIKP 223

Query: 63  DIILSKKDQSYQATKLHFENLVKRYGNPIIILNLIKTHEKKPREAILRQEFANAIDFINK 122
           DII+SKKD++YQAT+LHFENLVKRYGNPIIILNLIKTHEKKPRE+ILR EFANAIDFINK
Sbjct: 224 DIIVSKKDENYQATRLHFENLVKRYGNPIIILNLIKTHEKKPRESILRTEFANAIDFINK 403

Query: 123 DLSEENRLRFLHWDLHKHFQSKATNVLLLLGKVAAYALTLT 163
           DL EENRLRFLHWDLHKHFQSKATNVL LLGKVAAYALTLT
Sbjct: 404 DLPEENRLRFLHWDLHKHFQSKATNVLQLLGKVAAYALTLT 526


>BP032290 
          Length = 510

 Score =  182 bits (461), Expect = 1e-46
 Identities = 92/169 (54%), Positives = 118/169 (69%), Gaps = 1/169 (0%)
 Frame = +2

Query: 167 YCQVSSTLRPEDCLKWPSTDDVDKGSFSPTVHVEYDNEDANDLERKPSDEINVS-NENHS 225
           YC V+ +L+ +   ++  +++      S T     D ++ ++     +   + S N+++S
Sbjct: 2   YCPVTPSLKQDGLFQYSYSENNKVIDHSVTEQARTDKDNIDEQTETGNYHYSGSENKDYS 181

Query: 226 AKPPRLQNGVLRTNCIDCLDRTNVAQYAYGLAAIGHQLHSLGIIEHPKIDLDDPVANDLM 285
            KP  LQ GVLRTNCIDCLDRTNVAQYAYGLAA+G QL +LG +E P IDLD+P+A +LM
Sbjct: 182 VKPQMLQAGVLRTNCIDCLDRTNVAQYAYGLAALGRQLQALGFVESPYIDLDNPLARELM 361

Query: 286 QFYERMGDTLAHQYGGSAAHNKIFSARRGQWRAATQSQEFFRTLQRYYS 334
             YE MGD LA QYGGSAAHNKIFS RRGQW+AA QSQE  RTLQRYY+
Sbjct: 362 TVYESMGDKLAFQYGGSAAHNKIFSERRGQWKAAAQSQELIRTLQRYYN 508


>TC14704 
          Length = 587

 Score = 30.0 bits (66), Expect = 0.90
 Identities = 12/17 (70%), Positives = 14/17 (81%)
 Frame = +3

Query: 476 LDWLSSSANSCEEDPYE 492
           +DWLSSS NSCEE+  E
Sbjct: 3   VDWLSSSGNSCEEELLE 53


>TC16377 similar to UP|PRO6_HEVBR (Q9LEI8) Profilin 6 (Pollen allergen Hev b
           8.0204), complete
          Length = 698

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
 Frame = -3

Query: 94  LNLIKT--HEKKPREAILRQEFANAIDFINKDLSEENRLRFLHWDLHKHFQSKATNVLLL 151
           L L++T   +KK R    R++ +N  +   + L +E     +   L+ H     +N  ++
Sbjct: 564 LKLMQTIIEQKKSRSIATRKKTSNLENIGLQTLIDE----VISQPLNNHVALSRSNRFII 397

Query: 152 LGKVAAYALTLTGFFYCQVSSTLRPEDCLKWPSTD---------DVDKGSFSPTVHVEYD 202
             K      +LTGF Y   S +L P D   W S D            +   S  V + +D
Sbjct: 396 DAK----N*SLTGFLYGDTSRSLLPTDNSSWLSLDYHVFGTPKVQASRSKMSRFVKIFHD 229

Query: 203 NEDANDLE 210
             D   L+
Sbjct: 228 TRDLTSLK 205


>AV424892 
          Length = 190

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 267 GIIEHPKIDLDDPVANDLMQFYERMGDTLAHQYGGSAAHNKIFSARRGQWRA 318
           G+ +  ++ LD   A DL +   R G   A Q GG+ AH +  +AR+G+ +A
Sbjct: 154 GLHKRHRLGLDHGPARDLRRRRRRHGHGAAGQ-GGAGAHREGGAARKGRHKA 2


>AU251976 
          Length = 298

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 8/39 (20%)
 Frame = +2

Query: 352 HFQPQQDKPA--------LWELGSDQHYDTGRIGDDDAS 382
           HF P++D PA        L ELGSD   D G  GDD AS
Sbjct: 95  HFTPKEDSPAESEEEAPQLLELGSD---DGG--GDDSAS 196


>BP046819 
          Length = 459

 Score = 26.6 bits (57), Expect = 9.9
 Identities = 14/31 (45%), Positives = 18/31 (57%)
 Frame = -3

Query: 144 KATNVLLLLGKVAAYALTLTGFFYCQVSSTL 174
           K+  +LLLL  V AYA  LT F   + +S L
Sbjct: 418 KSMWILLLLNSVTAYAANLTXFLVTKHTSAL 326


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.328    0.141    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,086,861
Number of Sequences: 28460
Number of extensions: 128965
Number of successful extensions: 726
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of query: 492
length of database: 4,897,600
effective HSP length: 94
effective length of query: 398
effective length of database: 2,222,360
effective search space: 884499280
effective search space used: 884499280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)