TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124967.5 + phase: 0 /pseudo
         (233 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC9320 similar to UP|IF3B_ORYSA (Q94HF1) Eukaryotic translation ...   364  e-102
CB828199                                                               27  3.0
TC11730                                                                26  5.2
TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (F...    26  5.2

>TC9320 similar to UP|IF3B_ORYSA (Q94HF1) Eukaryotic translation initiation
           factor 3 subunit 11 (eIF-3 p25) (eIF3k), partial (97%)
          Length = 1086

 Score =  364 bits (934), Expect = e-102
 Identities = 187/233 (80%), Positives = 199/233 (85%), Gaps = 1/233 (0%)
 Frame = +1

Query: 2   GREAAAAAEKGQGGTAYTVEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLLRL 61
           G       E+ Q    Y VEQL+A N YNPDILPDLENYVNDQVSSQTYSL++NLCLLRL
Sbjct: 64  GENRKMGREREQAQVGYAVEQLLALNPYNPDILPDLENYVNDQVSSQTYSLDANLCLLRL 243

Query: 62  YQFESEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVIANGRSSSRH*L-FCLTI*R 120
           YQFE EKMSSQIVARILVKALMAMPAPDFSLCLFLIPERV    +  +   L   L   R
Sbjct: 244 YQFEPEKMSSQIVARILVKALMAMPAPDFSLCLFLIPERVQMEEQFKTLIVLSHYLETGR 423

Query: 121 FRQFWDEASKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEGLSLDKFL 180
           FRQFWDEA+KSRHIVEAVPGFEQAIQ YA+HV+SLTYQK+PRTVLAEAINVEGLSLDKFL
Sbjct: 424 FRQFWDEAAKSRHIVEAVPGFEQAIQSYAVHVISLTYQKVPRTVLAEAINVEGLSLDKFL 603

Query: 181 EHQVENSGWVIEKSQGKGQLIVLPRNEFNDPILKKNTADSVPLEHVTRIFPIL 233
           EHQV NSGW IEKSQGKGQLIV+PRNEFNDPILKKNTADSVPLEH+TRIFPIL
Sbjct: 604 EHQVANSGWAIEKSQGKGQLIVIPRNEFNDPILKKNTADSVPLEHITRIFPIL 762


>CB828199 
          Length = 511

 Score = 26.9 bits (58), Expect = 3.0
 Identities = 14/47 (29%), Positives = 24/47 (50%)
 Frame = +2

Query: 127 EASKSRHIVEAVPGFEQAIQGYAIHVLSLTYQKIPRTVLAEAINVEG 173
           +ASK  HI +       A+   A+H +SL ++ +P     +A +V G
Sbjct: 107 KASKFLHIDDEQHFHSSAVYAAALHSISLPFRMVPVGPATDAYSVSG 247


>TC11730 
          Length = 914

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 20  VEQLVAFNRYNPDILPDLENYVNDQVSSQTYSLESNLCLLR 60
           V+ ++ F R   +I P  E+Y  D V  + Y L   +C+LR
Sbjct: 692 VDNIIGFLRNGQEIDPR-EHYFEDLVQLEKYILAEMVCVLR 811


>TC9951 homologue to UP|TBB3_SOYBN (P28551) Tubulin beta chain (Fragment),
           partial (44%)
          Length = 600

 Score = 26.2 bits (56), Expect = 5.2
 Identities = 15/31 (48%), Positives = 18/31 (57%)
 Frame = -1

Query: 78  LVKALMAMPAPDFSLCLFLIPERVIANGRSS 108
           LV AL A+   DFS  L  I E+V  NGR +
Sbjct: 108 LVAALAALDVEDFSHFLGKIEEKVRENGREN 16


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.139    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,625,456
Number of Sequences: 28460
Number of extensions: 45751
Number of successful extensions: 210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of query: 233
length of database: 4,897,600
effective HSP length: 87
effective length of query: 146
effective length of database: 2,421,580
effective search space: 353550680
effective search space used: 353550680
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)