BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124967.11 + phase: 0
(602 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC17834 39 0.002
TC13330 similar to PIR|T08400|T08400 late embryonic abundant pro... 36 0.021
BP057268 34 0.078
TC17687 weakly similar to GB|AAH05628.1|13542865|BC005628 acidic... 29 1.9
BP065983 28 4.3
TC16316 homologue to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DN... 28 5.6
TC14223 similar to UP|Q8GZV0 (Q8GZV0) Obtusifoliol-14-demethylas... 28 5.6
TC15675 28 5.6
TC18401 weakly similar to UP|Q83MD5 (Q83MD5) Periplasmic serine ... 28 5.6
AV768209 27 7.3
TC16800 27 7.3
BP062464 27 7.3
BP036629 27 9.5
>TC17834
Length = 480
Score = 38.9 bits (89), Expect = 0.002
Identities = 17/22 (77%), Positives = 20/22 (90%)
Frame = +3
Query: 345 MVSYGFVDIEDFYTKASTRNMI 366
MVSYGF DIED YT++STRN+I
Sbjct: 225 MVSYGFGDIEDLYTESSTRNII 290
>TC13330 similar to PIR|T08400|T08400 late embryonic abundant protein EMB8
homolog F18B3.70 - Arabidopsis thaliana
{Arabidopsis thaliana;}, partial (21%)
Length = 434
Score = 35.8 bits (81), Expect = 0.021
Identities = 24/54 (44%), Positives = 31/54 (56%), Gaps = 1/54 (1%)
Frame = +2
Query: 141 ELKYQRVCLSASDGGVVSLDWPVELDLEEERGLDSTLLI-VPGTPQGSMDDNIR 193
++K +R CL DGG V+LDW V D + DS LLI +PG GS D +R
Sbjct: 257 DVKLRRQCLRTQDGGAVALDW-VSGD-DPSLPPDSPLLILLPGLTGGSGDSYVR 412
>BP057268
Length = 580
Score = 33.9 bits (76), Expect = 0.078
Identities = 16/52 (30%), Positives = 33/52 (62%), Gaps = 1/52 (1%)
Frame = -3
Query: 353 IEDFYTKASTRNMIKDIKIPVLFIQS-DNGMVPAFSVPRNLIAENPFTSLLL 403
++++Y+ +S+ + IK ++ P+L IQ+ + + P +PR I ENP L++
Sbjct: 578 VDEYYSNSSSSDSIKHVQTPLLCIQAAXDPIAPNRGIPREDIKENPNCLLIV 423
>TC17687 weakly similar to GB|AAH05628.1|13542865|BC005628 acidic nuclear
phosphoprotein 32 family, member B {Mus musculus;},
partial (9%)
Length = 702
Score = 29.3 bits (64), Expect = 1.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -1
Query: 83 SQNSDVGEWILFASPTPFNRFVLLRCPSIS 112
SQNS G ASP+PF+ F L CPS++
Sbjct: 285 SQNSPPG-----ASPSPFHNFELYICPSVT 211
>BP065983
Length = 356
Score = 28.1 bits (61), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 20 QFRLYKRRRLKIKASFPVPPPSPFENLFNTLI 51
Q+R +RRR + P PPPSP + + +++
Sbjct: 309 QYRHNRRRRSQFLHRSPSPPPSPSQQIITSVV 214
>TC16316 homologue to UP|Q9LTA2 (Q9LTA2) Similarity to AT-hook DNA-binding
protein, partial (7%)
Length = 488
Score = 27.7 bits (60), Expect = 5.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 3 VTTLTTSFLPAKPFPSRQFRLYKRRR 28
+TT TT+ LP++P P+ R RRR
Sbjct: 322 ITTPTTTHLPSQPLPTHPHRRRGRRR 399
>TC14223 similar to UP|Q8GZV0 (Q8GZV0) Obtusifoliol-14-demethylase, complete
Length = 1917
Score = 27.7 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 33 ASFPVPPPSPFENLFNTLISQCSSVNSIDFIAPSLGFASGSA 74
+ FP PPPSP+++L S + +S +PS +S S+
Sbjct: 61 SQFPSPPPSPWKSLMAAATSSSTPCSSSSPPSPSPSSSSPSS 186
>TC15675
Length = 551
Score = 27.7 bits (60), Expect = 5.6
Identities = 11/32 (34%), Positives = 18/32 (55%)
Frame = +3
Query: 26 RRRLKIKASFPVPPPSPFENLFNTLISQCSSV 57
RRR ++ S P PPP+P L+ Q +++
Sbjct: 96 RRRAQVAPSPPTPPPAPTHETSTPLMQQLNNI 191
>TC18401 weakly similar to UP|Q83MD5 (Q83MD5) Periplasmic serine protease
Do, heat shock protein HtrA, partial (5%)
Length = 499
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/43 (39%), Positives = 22/43 (50%)
Frame = -1
Query: 20 QFRLYKRRRLKIKASFPVPPPSPFENLFNTLISQCSSVNSIDF 62
QFR +K R LK + F PP + NL IS +S+ I F
Sbjct: 229 QFRCWKSRTLKFRGEF--PPLNVLXNLRGCFISS*TSLKLIRF 107
>AV768209
Length = 422
Score = 27.3 bits (59), Expect = 7.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 417 SALSWCQLVTVEVAI*LSIFYMCNFGM 443
SAL C L V + + + +FY+CN G+
Sbjct: 319 SALGKCVL*LVNIIVAVFVFYLCNIGI 239
>TC16800
Length = 664
Score = 27.3 bits (59), Expect = 7.3
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 38 PPPSPFENLFNTLISQ 53
PPP+PF ++FN L+S+
Sbjct: 100 PPPAPFFDIFNVLLSE 53
>BP062464
Length = 401
Score = 27.3 bits (59), Expect = 7.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +2
Query: 10 FLPAKPFPSRQFRLYKRRRLKIKASFPVPP 39
FLP P P+ + R+ +RRR + + +FP+ P
Sbjct: 272 FLPRTP-PTHRLRILRRRRRQRRRTFPLRP 358
>BP036629
Length = 518
Score = 26.9 bits (58), Expect = 9.5
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 4 TTLTTSFLPAKPFPSRQFRLYKRRRLKIKASFPVPP 39
TT TT + + F R Y RRR ++ PP
Sbjct: 141 TTTTTPMITSTTFSIPSHRRYHRRRFSLRTPLDAPP 248
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,813,976
Number of Sequences: 28460
Number of extensions: 138624
Number of successful extensions: 785
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of query: 602
length of database: 4,897,600
effective HSP length: 95
effective length of query: 507
effective length of database: 2,193,900
effective search space: 1112307300
effective search space used: 1112307300
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC124967.11