TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124967.1 - phase: 0 /pseudo
         (462 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC10210                                                                29  1.9
TC10198                                                                27  5.5
TC14377 similar to UP|PSQ2_ARATH (Q41932) Oxygen-evolving enhanc...    27  7.1
BP067740                                                               27  9.3

>TC10210 
          Length = 765

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 307 SWWKSFCFDWYTDC 320
           SWWK  CF W T C
Sbjct: 753 SWWKPICFMWCTRC 712


>TC10198 
          Length = 644

 Score = 27.3 bits (59), Expect = 5.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 326 HQRYLFL**YSFNCYYRHWCYSLFHCFRMCL*TGFDCV*Y 365
           +Q  +F   + FN    H    LF+CF+ C    F C+ Y
Sbjct: 338 YQTLIFRNIFLFNFMKIHCSMFLFYCFKTCKFPSFSCLLY 457


>TC14377 similar to UP|PSQ2_ARATH (Q41932) Oxygen-evolving enhancer protein
           3-2, chloroplast precursor (OEE3) (16 kDa subunit of
           oxygen evolving system of photosystem II) (OEC 16 kDa
           subunit), partial (96%)
          Length = 936

 Score = 26.9 bits (58), Expect = 7.1
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 132 CC*VCCKICGACKVLSPLCPG 152
           CC  CC  CG   VLS L  G
Sbjct: 216 CCCCCCCYCGCSSVLSHLVGG 154


>BP067740 
          Length = 529

 Score = 26.6 bits (57), Expect = 9.3
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 337 FNCYYRHWCYSLFHCF 352
           F+C+ + WC   F+CF
Sbjct: 83  FHCFLKKWCSLFFNCF 36


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.376    0.169    0.742 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,375,755
Number of Sequences: 28460
Number of extensions: 154728
Number of successful extensions: 3043
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 1702
Number of HSP's gapped (non-prelim): 1455
length of query: 462
length of database: 4,897,600
effective HSP length: 93
effective length of query: 369
effective length of database: 2,250,820
effective search space: 830552580
effective search space used: 830552580
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.5 bits)
S2: 57 (26.6 bits)