BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124966.5 - phase: 0
(1309 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV780009 209 2e-54
BP075943 149 3e-36
TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%) 116 2e-26
BP066094 100 3e-24
TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, p... 106 2e-23
BP084332 100 1e-21
AV409763 96 4e-20
BP043850 88 1e-17
AV424544 85 6e-17
TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%) 85 6e-17
AV410378 84 1e-16
BP054557 84 1e-16
BP057233 76 4e-14
TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-rela... 69 6e-12
TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragm... 43 3e-11
AU088980 63 3e-10
AV411594 62 4e-10
AV766665 55 5e-08
AV769206 49 5e-06
TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retro... 44 2e-04
>AV780009
Length = 529
Score = 209 bits (533), Expect = 2e-54
Identities = 99/163 (60%), Positives = 125/163 (75%)
Frame = -1
Query: 1123 AATQVLRYLKGSVGKGLFLSASSSINLVGYADSDWAGCPTTRRSTTGYFTMLGSNPISWK 1182
AAT+VLRY+KG+ +GLF SA S + L Y+DSDWAGCP TRRS TGY LG++ ISW+
Sbjct: 526 AATRVLRYVKGAPAQGLFFSADSPLKLQAYSDSDWAGCPDTRRSVTGYSIFLGTSLISWR 347
Query: 1183 TKKQPTISRSSAEAEYRSLATLSSELQWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENP 1242
TKKQ T+SRSS+EAEYR+LA E+QWL YL L ++ P P+ ++CD+Q+A+HIA NP
Sbjct: 346 TKKQTTVSRSSSEAEYRALAATVCEVQWLSYLFQFLKLNVPLPVPLFCDNQSALHIAHNP 167
Query: 1243 VFHERTKHIEIDCHFVREKIKSGLIAPSYIRSSDQLADIFTKP 1285
FHERTKHIE+DCH VR K+++GLI I + QLADIFTKP
Sbjct: 166 TFHERTKHIELDCHVVRAKLQAGLIHLLPISTHHQLADIFTKP 38
>BP075943
Length = 547
Score = 149 bits (376), Expect = 3e-36
Identities = 81/161 (50%), Positives = 103/161 (63%), Gaps = 1/161 (0%)
Frame = -3
Query: 987 VLVYVDDIIITGNNENAISKIKKFLAQSFSIKDLGNLSYILGIEVSRSKKGIFLCQRKYT 1046
+L+YVDD+++ GN+ + I +K L F IKDLG Y LG+E++RS GI L QRKY
Sbjct: 521 LLLYVDDVLLAGNDMHEIQLVKSSLHDQFRIKDLGEAKYFLGLEIARSTSGIVLNQRKYA 342
Query: 1047 LDILSDSGMTGCRPSDFPMEQHLR-LRPNDGTPLSDPTVYRRHVGRLLYLTVTRPDIQYA 1105
L ++SDSG G +P + + + L N GTPL+D YRR VGRLLYL TRPDI +A
Sbjct: 341 LQLISDSGHFGFQPRFYSHGTNSQTLGTNTGTPLTDIGSYRRIVGRLLYLNTTRPDITFA 162
Query: 1106 VNTLSQFMQSPYSSHFDAATQVLRYLKGSVGKGLFLSASSS 1146
VN LSQF+ +P H T L+YL GS G GLF ASSS
Sbjct: 161 VNQLSQFLSAPTDIHEQQLTGFLKYL*GSPGSGLFYPASSS 39
>TC16929 weakly similar to UP|Q9LFY6 (Q9LFY6) T7N9.5, partial (4%)
Length = 553
Score = 116 bits (291), Expect = 2e-26
Identities = 57/98 (58%), Positives = 68/98 (69%)
Frame = +1
Query: 1209 QWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGLIA 1268
QWL YLL DL + QP +YCD+ +A HIA NPVFHERTKHIEIDCH VRE+I+ GLI
Sbjct: 1 QWLTYLLQDLKVPFEQPALVYCDNNSARHIAANPVFHERTKHIEIDCHIVRERIQKGLIH 180
Query: 1269 PSYIRSSDQLADIFTKPLGGDAYKRILGKLGVIEISIP 1306
I SS+ LADI+TK L + +I KLG+I I P
Sbjct: 181 LLPISSSEPLADIYTKALSPQNFHQICAKLGLINICSP 294
>BP066094
Length = 532
Score = 100 bits (249), Expect(2) = 3e-24
Identities = 54/149 (36%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Frame = +2
Query: 883 AKLVTVRLLLSIAAIKNWPLYQFDVNNAFLQGDLSEEVYMKLPPGFSHKKKPC-VCKLNK 941
+K +RLL+S + N L+Q +V +AFL G +SEEVY+ PPG +K + KL K
Sbjct: 86 SKTEAIRLLISFSVNHNIILHQMNVKSAFLNGYISEEVYVHQPPGXEDEKNSDHIFKLKK 265
Query: 942 SIYGLKQASRQWFSKFSTTLIQKGFRQSISDYSLFTYNCDQTTIFVLVYVDDIIITGNNE 1001
S+YGLKQA R W+ + S+ L++ + D +LF + V +YVDDII N
Sbjct: 266 SLYGLKQAPRAWYERLSSFLLENEXVRGKVDTTLFCKTYKDDILIVQIYVDDIIFGSANP 445
Query: 1002 NAISKIKKFLAQSFSIKDLGNLSYILGIE 1030
+ + + + F ++ +G L Y LGI+
Sbjct: 446 SLCKEFSEMMQAEFEMRMMGELKYFLGIQ 532
Score = 29.6 bits (65), Expect(2) = 3e-24
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +3
Query: 867 YSQVQGIDYHDTFAPVAK 884
YSQ GIDY +TFAPVA+
Sbjct: 39 YSQQ*GIDYTETFAPVAR 92
>TC15664 weakly similar to UP|O81617 (O81617) F8M12.17 protein, partial (4%)
Length = 670
Score = 106 bits (265), Expect = 2e-23
Identities = 52/97 (53%), Positives = 65/97 (66%)
Frame = +1
Query: 1207 ELQWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGL 1266
EL WL Y+L DL + P +YCDSQ+A HIA N VFHERTKH++IDCH VREK+++ L
Sbjct: 4 EL*WLTYILQDLRVPFISPSLLYCDSQSARHIATNAVFHERTKHLDIDCHVVREKLQAKL 183
Query: 1267 IAPSYIRSSDQLADIFTKPLGGDAYKRILGKLGVIEI 1303
I S DQ ADI TKPL + ++ KLGV+ I
Sbjct: 184 FHLLPISSVDQTADILTKPLESGPFSHLVSKLGVLNI 294
>BP084332
Length = 368
Score = 100 bits (250), Expect = 1e-21
Identities = 50/113 (44%), Positives = 73/113 (64%)
Frame = +2
Query: 1186 QPTISRSSAEAEYRSLATLSSELQWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENPVFH 1245
Q TI+ S+AEAEY S A S+++ W+K+ L D I I IYCD+ AAI +++NP+ H
Sbjct: 32 QSTIALSTAEAEYISAAICSTQMLWMKHQLEDYQILESN-IPIYCDNTAAISLSKNPILH 208
Query: 1246 ERTKHIEIDCHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGGDAYKRILGKL 1298
R KHIE+ HF+R+ ++ G++ ++ + Q ADIFTKPL D + IL L
Sbjct: 209 SRAKHIEVKYHFIRDYVQKGVLLLKFVDTDHQWADIFTKPLAEDRFNFILKNL 367
>AV409763
Length = 426
Score = 95.9 bits (237), Expect = 4e-20
Identities = 55/129 (42%), Positives = 80/129 (61%), Gaps = 4/129 (3%)
Frame = +2
Query: 8 LYIITLLQIFFPLLLFAIMSDIPPSENSPLSSISSPITVHSTTNP---DPCVIHHSDNPS 64
++II + F LLL + + + + ++P ++ NP +P +H SDNP
Sbjct: 38 IFIIRFSVLDFSLLLRLCVLLLQ*RFFTTMEDAANPFMANA--NPFMANPFYLHPSDNPG 211
Query: 65 TVLVTPLLTGDNYGSWSRAVTMALRAKNKFGFVDGSLTIPKKKEDIL-TWQRCNDLVASW 123
LV+ +LTGDNY SWSRA+ MAL AKNK GFVD S+ +P + + + WQR N++VASW
Sbjct: 212 ISLVSQVLTGDNYRSWSRAMRMALIAKNKLGFVDASILVPDELDPLFHPWQRNNNIVASW 391
Query: 124 ILNSVSTEI 132
ILNSVS ++
Sbjct: 392 ILNSVSKDL 418
>BP043850
Length = 515
Score = 87.8 bits (216), Expect = 1e-17
Identities = 43/97 (44%), Positives = 63/97 (64%)
Frame = -1
Query: 1206 SELQWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSG 1265
SE+ WL+ LLS+LG QP ++ D+ +AI IA NPV+HE T+HIE+DCH VRE
Sbjct: 515 SEIIWLRGLLSELGFLQSQPTPLHADNTSAIQIAANPVYHEWTRHIEVDCHSVREAYDRR 336
Query: 1266 LIAPSYIRSSDQLADIFTKPLGGDAYKRILGKLGVIE 1302
+I ++ +S Q+ADI TK L + ++ KL ++E
Sbjct: 335 VITLPHVSTSVQIADILTKSLTRQRHNFLVSKLMLVE 225
>AV424544
Length = 276
Score = 85.1 bits (209), Expect = 6e-17
Identities = 46/91 (50%), Positives = 59/91 (64%)
Frame = +3
Query: 955 SKFSTTLIQKGFRQSISDYSLFTYNCDQTTIFVLVYVDDIIITGNNENAISKIKKFLAQS 1014
+K S+ L G+ QS D+SLFT D + +LVYVDD+I+ GN+ N I +K L
Sbjct: 3 AKLSSYLHILGYIQSAHDHSLFTKFRDASFTVILVYVDDLILAGNDLNEIQCVKNKLDIQ 182
Query: 1015 FSIKDLGNLSYILGIEVSRSKKGIFLCQRKY 1045
F IKDLG L Y LG+EV+RS G+FL QRKY
Sbjct: 183 FRIKDLGTLKYFLGLEVARSSCGLFLSQRKY 275
>TC8952 similar to UP|O82607 (O82607) T2L5.9 protein, partial (3%)
Length = 550
Score = 85.1 bits (209), Expect = 6e-17
Identities = 39/80 (48%), Positives = 57/80 (70%)
Frame = +3
Query: 1207 ELQWLKYLLSDLGIDHPQPITIYCDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGL 1266
E WL Y L+DL I + IYCD+++A+H+A N VFH+RT++IEIDCH V K+ G+
Sbjct: 21 EALWLTYALADLRIASLLLVVIYCDNRSALHLAANSVFHKRTENIEIDCHIV*VKVLFGI 200
Query: 1267 IAPSYIRSSDQLADIFTKPL 1286
+ ++ SSDQ+AD+FTK +
Sbjct: 201 LHLLHVPSSDQVADVFTKTI 260
>AV410378
Length = 358
Score = 84.0 bits (206), Expect = 1e-16
Identities = 49/117 (41%), Positives = 66/117 (55%), Gaps = 11/117 (9%)
Frame = +1
Query: 731 PPSTEMNPPN---HRHSQRIRNPPIHLKDYICKI--NNVTSK------INFPLENYLSLS 779
P T NP R S R+R PP +L+DY C + + SK I++PL +S
Sbjct: 7 PSETLSNPEEGNVQRISNRVRRPPSYLQDYHCTLAASTTVSKVPSSAGISYPLSKVISYH 186
Query: 780 NLSNSHRAFLINIIENKEPKSYSQAMKSVEWRDAMAKEIQALESNNTWILCPLPEGK 836
L+ S+RAF++NI EP YS+A+K WR AM +EI+ALE N+TWIL P K
Sbjct: 187 KLTPSYRAFIMNITTVSEPTRYSEAVKHECWRKAMDQEIEALERNHTWILVDKPPDK 357
>BP054557
Length = 538
Score = 84.0 bits (206), Expect = 1e-16
Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 1/150 (0%)
Frame = -2
Query: 370 IIDSGASNHICTSLSLFSSYYPVNNQISVQQPDGSQALVKHIGTINCSPSLILTNVYHVP 429
++D+GA++H+C +L +F + V+ + + P+G + + ++ S L V +VP
Sbjct: 537 LLDTGATHHVCHNLDVFQALRQVH-PVLLSMPNGQKEIAHMADSVYFSEKFFLAXVLYVP 361
Query: 430 TFKFNLMSVTQLTESLNCDAIFSSSGCVFQDQATKKMIGRGSARNELYYLNQDLVSNKHD 489
+F FNL+SV+ L +SLNC + C+ Q++ T K IG R LY + V KH
Sbjct: 360 SFNFNLISVSALVKSLNCRLVIFDECCLLQERPTLKTIGAAEERGGLYAVIDPAVKAKHP 181
Query: 490 KDHYCLSHPLSSL-FSSKHCNKFDLWHLRL 518
+ +S F CN LWHLRL
Sbjct: 180 PAEGNIKTQVSHFNFCQFDCN---LWHLRL 100
>BP057233
Length = 473
Score = 75.9 bits (185), Expect = 4e-14
Identities = 32/79 (40%), Positives = 53/79 (66%)
Frame = -2
Query: 1223 PQPITIYCDSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGLIAPSYIRSSDQLADIF 1282
P+ ++CD+ +A +A NPV H R+KHIEID H++R+++ + +Y+ ++DQ+AD
Sbjct: 460 PRKPILWCDNLSAKALASNPVLHARSKHIEIDVHYIRDQVLQNEVVVAYVPTTDQIADCL 281
Query: 1283 TKPLGGDAYKRILGKLGVI 1301
TKPL + ++ KLGVI
Sbjct: 280 TKPLSHTRFSQLRDKLGVI 224
>TC12832 weakly similar to UP|POLX_TOBAC (P10978) Retrovirus-related Pol
polyprotein from transposon TNT 1-94 [Contains: Protease
; Reverse transcriptase ; Endonuclease] , partial (9%)
Length = 747
Score = 68.6 bits (166), Expect = 6e-12
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 3/118 (2%)
Frame = +2
Query: 957 FSTTLIQKGFRQSISDYSLFTYNCDQTT-IFVLVYVDDIIITGNNENAISKIKKFLAQSF 1015
F + ++ G+ + SD+ + D I +L+YVDD+++ G N++ + ++K LA+ F
Sbjct: 2 FDSFIMSLGYNRLSSDHCTYHKRFDDNDFIILLLYVDDMLVVGPNKDRVQELKAQLAREF 181
Query: 1016 SIKDLGNLSYILGIEVSRSKKG--IFLCQRKYTLDILSDSGMTGCRPSDFPMEQHLRL 1071
+KDLG + ILG+++ R +K I+L Q+ Y +L M C P P+ + +L
Sbjct: 182 DMKDLGPANKILGMQIHRDRKDRRIWLSQKNYLQKVLRRFNMQDCNPISTPLPVNYKL 355
>TC10484 similar to UP|Q850H7 (Q850H7) Gag-pol polyprotein (Fragment), partial
(20%)
Length = 479
Score = 43.1 bits (100), Expect(3) = 3e-11
Identities = 15/33 (45%), Positives = 26/33 (78%)
Frame = +3
Query: 1210 WLKYLLSDLGIDHPQPITIYCDSQAAIHIAENP 1242
W+ +LS++GI+ P+ ++CD+QAA+HI+ NP
Sbjct: 3 WVGQILSEMGIERISPMPLWCDNQAALHISSNP 101
Score = 32.0 bits (71), Expect(3) = 3e-11
Identities = 11/12 (91%), Positives = 12/12 (99%)
Frame = +2
Query: 1245 HERTKHIEIDCH 1256
HERTKHIE+DCH
Sbjct: 113 HERTKHIEVDCH 148
Score = 30.4 bits (67), Expect(3) = 3e-11
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +1
Query: 1256 HFVREKIKSGLIAPSYIRSSDQLADIFTKPLGG 1288
+FVR ++ LI+ SY+R++ L D+FTK L G
Sbjct: 151 YFVRNFNRT-LISTSYVRTATHLPDVFTKALNG 246
>AU088980
Length = 360
Score = 63.2 bits (152), Expect = 3e-10
Identities = 31/80 (38%), Positives = 48/80 (59%), Gaps = 1/80 (1%)
Frame = +2
Query: 562 AAYLINKLPTPILKFKSPHQVLLGSPPSYSSLRVFGCLCFAKNM-NIQHKFDERSKPGIF 620
AAYLIN LP+P+LK + P+Q L P+ L+VFG LC++ + + K D R++ +F
Sbjct: 107 AAYLINXLPSPLLKGQCPYQFLNNDSPTLLDLKVFGTLCYSSTLTHNXQKLDPRARKCVF 286
Query: 621 VGYPFNQKGYRIYDMKTRQI 640
+G+ GY + D+ T I
Sbjct: 287 LGFKTGTXGYIVMDLPTTXI 346
>AV411594
Length = 244
Score = 62.4 bits (150), Expect = 4e-10
Identities = 27/60 (45%), Positives = 40/60 (66%)
Frame = +2
Query: 1031 VSRSKKGIFLCQRKYTLDILSDSGMTGCRPSDFPMEQHLRLRPNDGTPLSDPTVYRRHVG 1090
+++SKKGI L +RKY L +L D+ GC+P FP++ ++L DG LSD T+Y R +G
Sbjct: 65 IAKSKKGILLSRRKYALQLLDDTRNMGCKPPPFPLDPSIKLNSTDGELLSDVTLYIRFIG 244
>AV766665
Length = 601
Score = 55.5 bits (132), Expect = 5e-08
Identities = 28/84 (33%), Positives = 46/84 (54%)
Frame = +3
Query: 1117 YSSHFDAATQVLRYLKGSVGKGLFLSASSSINLVGYADSDWAGCPTTRRSTTGYFTMLGS 1176
+SS T++ YLK + +G ++ G+ +D+ G R ST GY+ L
Sbjct: 345 WSSLKTFTTRIF*YLKANSRRGPLFQKEGKSSMDGFTYADYLGSIVDRLSTMGYYMFLSG 524
Query: 1177 NPISWKTKKQPTISRSSAEAEYRS 1200
N ++W++K+Q I+RSS EAE R+
Sbjct: 525 NLVTWRSKQQNIIARSSGEAELRA 596
>AV769206
Length = 536
Score = 48.9 bits (115), Expect = 5e-06
Identities = 23/49 (46%), Positives = 29/49 (58%)
Frame = -3
Query: 610 KFDERSKPGIFVGYPFNQKGYRIYDMKTRQIYVSRDVQFHETVFPYQDI 658
K SK +F+GY N KGY+ D R IY+S+DV FHE FPY +
Sbjct: 510 KLSLHSKECVFIGYSINHKGYKCLDQSGR-IYISKDVLFHEHRFPYPSL 367
>TC19474 weakly similar to UP|Q9FJA1 (Q9FJA1) Similarity to retroelement pol
polyprotein, partial (3%)
Length = 517
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/58 (41%), Positives = 37/58 (63%)
Frame = -2
Query: 1231 DSQAAIHIAENPVFHERTKHIEIDCHFVREKIKSGLIAPSYIRSSDQLADIFTKPLGG 1288
D++AA+H+ + F R KHIEID HF+ ++ I+ ++ S+DQL D+FTK G
Sbjct: 354 DNKAALHMPKI*-FSMRAKHIEIDFHFL*DRRLYLDISTRFVNSNDQLTDVFTKSWRG 184
Score = 35.8 bits (81), Expect = 0.045
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = -1
Query: 1174 LGSNPISWKTKKQPTISRSSAEAEYRSLATLSSELQWLKYLLSDLGIDHPQPITIYCDSQ 1233
L N ISWK+K+ ++RS AEAE+R +AT + + G T
Sbjct: 517 LSDNLISWKSKETIIVARSRAEAEFRVMATATXSK*FASKT*RFGGCVTDN--THLRQ*G 344
Query: 1234 AAIHIAENPVFHERTKHIEIDCHFVREKIKSG 1265
+ H A+N VFHE H + F+R KI SG
Sbjct: 343 SPTH-AQNLVFHEGQTH*D*LPFFIR*KIVSG 251
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,434,865
Number of Sequences: 28460
Number of extensions: 405938
Number of successful extensions: 3096
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 2887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3058
length of query: 1309
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1208
effective length of database: 2,023,140
effective search space: 2443953120
effective search space used: 2443953120
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Medicago: description of AC124966.5