BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124966.14 - phase: 0
(588 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19851 similar to UP|Q9SKK6 (Q9SKK6) At2g25430 protein (At2g254... 137 4e-33
BP035493 120 8e-28
AV406425 107 4e-24
TC13970 similar to UP|Q8S9J8 (Q8S9J8) AT4g32280/F10M6_80, partia... 89 3e-18
AV419617 81 5e-16
TC11141 75 4e-14
TC11406 74 9e-14
TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%) 37 0.009
AV429033 37 0.009
TC18730 similar to UP|Q963J2 (Q963J2) Voltage-dependent calcium ... 37 0.012
TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, ... 36 0.020
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 35 0.026
TC8543 weakly similar to UP|BIB_DROME (P23645) Neurogenic protei... 34 0.058
TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor,... 34 0.076
TC15605 33 0.099
AU088817 33 0.17
TC18339 weakly similar to GB|AAF21246.1|6648604|AF048705 ubiquit... 33 0.17
TC8309 UP|O22306 (O22306) Nlj21, complete 32 0.22
BP034655 32 0.29
TC12380 similar to GB|BAC55960.1|28071265|AB087408 actin binding... 32 0.38
>TC19851 similar to UP|Q9SKK6 (Q9SKK6) At2g25430 protein
(At2g25430/F13B15.9), partial (30%)
Length = 642
Score = 137 bits (346), Expect = 4e-33
Identities = 92/221 (41%), Positives = 126/221 (56%), Gaps = 24/221 (10%)
Frame = +1
Query: 349 EEENEVEEDMNEIKALPPPEGFNEE-QVEEEIKEQDQKEEEKIVQTEGDLLDLTDSMTNQ 407
+ E E DMNEIKALPPPE + Q E E K Q Q +E DL++L +
Sbjct: 7 QPEEEPVPDMNEIKALPPPENYTPPPQPEPEPKPQPQVQE--------DLVNLREDAVTA 162
Query: 408 DYVGNKLALALFDELPNTTSNTIQALPWHAFDDVS-------------DWETTLVQSSTN 454
D GN+ A ALF P + + QA P + +V+ DWE LV++++N
Sbjct: 163 DDQGNRFAXALFAGAPANGNGSWQAFPSNGQPEVTSAWQNPAAEPGKADWELALVETASN 342
Query: 455 LPNQKPSLGGGFDTLLLDSMYN-----QKPSLQGMNGYGSASSVAI----RSEATMLALP 505
L NQK +LGGG D LLL+ MY+ Q S ++G GSASSVA+ ++ +LALP
Sbjct: 343 LANQKAALGGGLDPLLLNGMYDQGMVRQHVSTANLSG-GSASSVALPGPGKTTTPVLALP 519
Query: 506 APPTS-RNGSQDPFAASMLVAPPAYVQMSEMETRQRLLAEE 545
AP S + +QDPFAAS+ + PP+YVQM++ME +Q LL +E
Sbjct: 520 APDGSVQPVNQDPFAASLTIPPPSYVQMADMEKKQHLLVQE 642
>BP035493
Length = 493
Score = 120 bits (300), Expect = 8e-28
Identities = 60/140 (42%), Positives = 96/140 (67%), Gaps = 2/140 (1%)
Frame = +1
Query: 4 STLRRAIGAVKDQTSIGIAKVGSSASIGDLQVAIVKATKHDENPAEERHIREILSLTCYS 63
+++R+A+GA+KD T++ +AKV S +L +AIV+AT H E P++E+HIR I S +
Sbjct: 79 NSIRKALGALKDTTTVSLAKVNSDYK--ELDIAIVRATNHVERPSKEKHIRAIFSAISAT 252
Query: 64 R--AFISSCVNTLSKRLIKTSSWTVALKTLVLIQRLLADGDRAYEQEIFFSTQRGTRLLN 121
R A ++ C++ L++RL +T +W VALKTLV+I R L + D + +E+ + + +LN
Sbjct: 253 RPRADVAYCIHALARRLSRTHNWAVALKTLVVIHRALREVDPTFHEELINYGRSRSHMLN 432
Query: 122 MSDFRDKSKSNSWDYSSFVR 141
MS F+D S N+WDYS++VR
Sbjct: 433 MSHFKDDSSPNAWDYSAWVR 492
>AV406425
Length = 406
Score = 107 bits (268), Expect = 4e-24
Identities = 54/88 (61%), Positives = 71/88 (80%)
Frame = +2
Query: 1 MSQSTLRRAIGAVKDQTSIGIAKVGSSASIGDLQVAIVKATKHDENPAEERHIREILSLT 60
M+ ST+R+AIGAVKDQTSIGIAKV S+ + +L+VAIVKAT HDE+PA E++ RE+L+L
Sbjct: 146 MASSTIRKAIGAVKDQTSIGIAKVASNMA-PELEVAIVKATSHDEDPASEKYAREVLNLM 322
Query: 61 CYSRAFISSCVNTLSKRLIKTSSWTVAL 88
YSR ++ +CV+ +SKRL KT W VAL
Sbjct: 323 SYSRGYVHACVSAVSKRLGKTRDWIVAL 406
>TC13970 similar to UP|Q8S9J8 (Q8S9J8) AT4g32280/F10M6_80, partial (9%)
Length = 541
Score = 88.6 bits (218), Expect = 3e-18
Identities = 47/95 (49%), Positives = 60/95 (62%), Gaps = 9/95 (9%)
Frame = +1
Query: 503 ALPAPPTSRN--GSQDPFAASMLVAPPAYVQMSEMETRQRLLAEEQAIWQQYAKNGMQGQ 560
ALPAP + GSQDPFAAS+ V PP+YVQ++EME +Q+LL +EQ +WQ Y GMQGQ
Sbjct: 1 ALPAPDGTMQTLGSQDPFAASLSVPPPSYVQIAEMERKQQLLVQEQQLWQPYGSEGMQGQ 180
Query: 561 VGFATQQQPNSNFYMGGYQQNH-------YGNYYH 588
VG T+ S +++ GY H G YYH
Sbjct: 181 VGL-TRLAAGSGYHVAGYGMPHPFGGIGLPGGYYH 282
>AV419617
Length = 252
Score = 80.9 bits (198), Expect = 5e-16
Identities = 31/73 (42%), Positives = 51/73 (69%)
Frame = +3
Query: 258 LGIFIDRFTEMEVPEYYKVYDVFCRVGKQYDELDLFYSWSKSIGIGRSSEYPEIEKVTTK 317
L + +D+F +ME + K +D + KQ DEL FY+W K G+GRSSEYPE++++T K
Sbjct: 3 LAVLLDKFFDMEYTDCVKAFDAYASAAKQIDELVAFYNWCKDTGVGRSSEYPEVQRITAK 182
Query: 318 KLDLMDQFIRDKS 330
L+ +++F+RD++
Sbjct: 183 LLETLEEFVRDRA 221
>TC11141
Length = 597
Score = 74.7 bits (182), Expect = 4e-14
Identities = 45/174 (25%), Positives = 86/174 (48%), Gaps = 12/174 (6%)
Frame = +2
Query: 200 REMKTDDLFSRMQHLQLLLERFMACRPTGRAKTHRMVIVALYPIVKESFQTYHDMTSILG 259
R++ +++L ++ LQ LL R + CRP G A ++ ++ AL ++KESF+ Y + +
Sbjct: 59 RDLDSEELLEQLPALQQLLYRLVGCRPEGAAVSNYVIQYALALVLKESFKIYCAINDGII 238
Query: 260 IFIDRFTEMEVPEYYKVYDVFCRVGKQYDELDLFYSWSKSIGIGRSSEYPEIEKVTTKKL 319
+D+F EM E K + + R G+Q L FY K + + R+ ++P + + L
Sbjct: 239 NLVDKFFEMPRHEAIKALEAYKRAGQQALNLSDFYEVCKGLELARNFQFPVLREPPQSFL 418
Query: 320 DLMDQFIRDK------------SLVSQANKLITQEENNEKNEEENEVEEDMNEI 361
M+++I++ L + ++++ E+ EEE V D N +
Sbjct: 419 TTMEEYIKEAPRVVTVPSEPMLQLTYRPDEVLAIEDTKSPEEEETSVPIDNNVV 580
>TC11406
Length = 447
Score = 73.6 bits (179), Expect = 9e-14
Identities = 35/128 (27%), Positives = 72/128 (55%)
Frame = +2
Query: 200 REMKTDDLFSRMQHLQLLLERFMACRPTGRAKTHRMVIVALYPIVKESFQTYHDMTSILG 259
+++ T +L ++ LQ LL R + C+P G A + ++ +AL + ES + Y ++
Sbjct: 62 KDLDTAELLEQLPSLQQLLYRVIGCQPQGAAINNFIIQLALSMVASESIKIYQAISDGTA 241
Query: 260 IFIDRFTEMEVPEYYKVYDVFCRVGKQYDELDLFYSWSKSIGIGRSSEYPEIEKVTTKKL 319
+D+F EM + K D++ RVG+Q + L FY +++ IGR ++ ++E+ + L
Sbjct: 242 NMVDKFFEMNRQDALKAIDIYRRVGQQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFL 421
Query: 320 DLMDQFIR 327
M+++++
Sbjct: 422 QAMEEYVK 445
>TC11270 similar to UP|Q9LM88 (Q9LM88) F2D10.15, partial (9%)
Length = 735
Score = 37.0 bits (84), Expect = 0.009
Identities = 21/64 (32%), Positives = 35/64 (53%)
Frame = +3
Query: 331 LVSQANKLITQEENNEKNEEENEVEEDMNEIKALPPPEGFNEEQVEEEIKEQDQKEEEKI 390
LV + N+ + +EE +E++EEE + E EE EEE E++++EEE +
Sbjct: 312 LVEKLNQGVEEEEEDEEDEEEQTPHPTRGRSRV----EHAQEEDEEEENGEEEEEEEEVV 479
Query: 391 VQTE 394
V+ E
Sbjct: 480 VEDE 491
Score = 32.0 bits (71), Expect = 0.29
Identities = 21/73 (28%), Positives = 35/73 (47%)
Frame = +3
Query: 327 RDKSLVSQANKLITQEENNEKNEEENEVEEDMNEIKALPPPEGFNEEQVEEEIKEQDQKE 386
R +S V A + +EEN E+ EEE EV + +EQ E+ E +++E
Sbjct: 393 RGRSRVEHAQEEDEEEENGEEEEEEEEVVVE--------------DEQGNEDEDEDEEEE 530
Query: 387 EEKIVQTEGDLLD 399
+V+ +G +D
Sbjct: 531 GVVVVEVKGRKVD 569
>AV429033
Length = 557
Score = 37.0 bits (84), Expect = 0.009
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 13 VKDQTSIGIAKVGSSASIGDLQVAIVKATKHDEN-PAEERHIREILSLTCYSRAFISSCV 71
+KD+ S+ A + + ++V +++AT H+ + P E I +L++ S +C+
Sbjct: 47 LKDKASVLAAALSIKRQVSSVKVRVLRATTHNLSAPP*EDTIAAVLAVGRGSYLLPRACI 226
Query: 72 NTLSKRLIKTSSWTVALKTL 91
+ L RL +T S VALK L
Sbjct: 227 DALMDRLHRTRSVEVALKCL 286
>TC18730 similar to UP|Q963J2 (Q963J2) Voltage-dependent calcium channel
alpha13 subunit (Fragment), partial (5%)
Length = 515
Score = 36.6 bits (83), Expect = 0.012
Identities = 16/30 (53%), Positives = 22/30 (73%)
Frame = +1
Query: 169 EDEEEQSRESKRERYRERDRDKEIVVRSTP 198
E E E+ RE +RER RER+R++E+V S P
Sbjct: 25 ERERERERERERERERERERERELVPNSAP 114
Score = 31.6 bits (70), Expect = 0.38
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 167 YDEDEEEQSRESKRERYRERDRDKE 191
+ E E E+ RE +RER RER+R++E
Sbjct: 3 HQERERERERERERERERERERERE 77
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +1
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 13 ERERERERERERERERERERERE 81
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +3
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 21 ERERERERERERERERERERERE 89
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +2
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 23 ERERERERERERERERERERERE 91
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +2
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 17 ERERERERERERERERERERERE 85
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +2
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 11 ERERERERERERERERERERERE 79
>TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, partial
(35%)
Length = 1096
Score = 35.8 bits (81), Expect = 0.020
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +1
Query: 148 DERLEYRMQYKRGRSGRFAYDEDEEEQSRESKRERYRERDRDKE 191
+ R +Y+R R G + E ++ R+ +R+RYR+RD D+E
Sbjct: 190 ERRKRKEQEYERKRRGDSSDREKHRDKDRDRERDRYRDRDSDRE 321
Score = 28.1 bits (61), Expect = 4.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = +1
Query: 152 EYRMQYKRGRSGRFAYDEDEEEQSRE---SKRERYRERDRDKE 191
E R+ +R R E E E+ R S RE++R++DRD+E
Sbjct: 157 EERLAREREAEERRKRKEQEYERKRRGDSSDREKHRDKDRDRE 285
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 35.4 bits (80), Expect = 0.026
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 12/149 (8%)
Frame = +1
Query: 311 IEKVTTKKLDLMDQFIRDKSLVSQA-NKLITQEENNEKNEEE--NEVEEDMNEIKALPPP 367
+ + TKK L+ + + L + NKL + + E+ EEE EVEE+ E
Sbjct: 91 VNESITKKRKLVPKSSQSAELPFKLQNKLEAEVQEYEEVEEEVEEEVEEEEEE------- 249
Query: 368 EGFNEEQVEEEIKEQDQKEEEKIVQTEGDLLDLTDSMTNQDYVGNKLALALFDELPNTTS 427
EE+ EE +E++++EEE+ V+ E + D + +G + ++L + +
Sbjct: 250 ----EEEEEEGEEEEEEEEEEEEVEAEAEEEDDEPIQKLLEPMGKEQIISLLADAASNHR 417
Query: 428 NTIQALPWHAFDDVS---------DWETT 447
+ + A +DVS W+TT
Sbjct: 418 DVADRIRKVADEDVSHRKIFVHGLGWDTT 504
>TC8543 weakly similar to UP|BIB_DROME (P23645) Neurogenic protein big
brain, partial (3%)
Length = 713
Score = 34.3 bits (77), Expect = 0.058
Identities = 26/84 (30%), Positives = 37/84 (43%), Gaps = 3/84 (3%)
Frame = +1
Query: 505 PAPPTSRNGSQDPFAASMLVAPPAYVQMSEMETRQRLLAEEQAIWQQYAKNGMQGQVGFA 564
PA T + DPF AS +A P VQM+ M +Q+ Y + Q Q+
Sbjct: 13 PAGATMQPTMHDPFFASNAMAAPHSVQMAAMSNQQQAF--------MYQQQQQQQQMMMM 168
Query: 565 TQQQPNSNFY---MGGYQQNHYGN 585
QQP +N + GG + YG+
Sbjct: 169 PPQQPAANPFGNAYGGATVHPYGS 240
>TC8711 weakly similar to UP|VCLC_PEA (P13918) Vicilin precursor, partial
(74%)
Length = 1591
Score = 33.9 bits (76), Expect = 0.076
Identities = 19/53 (35%), Positives = 28/53 (51%)
Frame = +2
Query: 148 DERLEYRMQYKRGRSGRFAYDEDEEEQSRESKRERYRERDRDKEIVVRSTPLR 200
DER ++ + +R GR +EDE+E R S + R R+ +E R TP R
Sbjct: 164 DERQPWQPRREREEHGREREEEDEKESRRPSWERKERTREWRRESEERDTPRR 322
>TC15605
Length = 576
Score = 33.5 bits (75), Expect = 0.099
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 515 QDPFAASMLVAPPAYVQMSEMETRQ 539
QDPFA S +APPA VQM+ M+ ++
Sbjct: 81 QDPFAVSSSIAPPAAVQMAAMQQQE 155
>AU088817
Length = 191
Score = 32.7 bits (73), Expect = 0.17
Identities = 19/41 (46%), Positives = 24/41 (58%)
Frame = +1
Query: 169 EDEEEQSRESKRERYRERDRDKEIVVRSTPLREMKTDDLFS 209
E E E+ RE +RER RER+R++ V PL T LFS
Sbjct: 64 ERERERERERERERXRERERERXSFVSRFPL---PTHTLFS 177
Score = 31.6 bits (70), Expect = 0.38
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +1
Query: 169 EDEEEQSRESKRERYRERDRDKEIVVRSTPLREMKTDDLFSR 210
E E E+ RE +RER RER+R++E RE + SR
Sbjct: 22 ERERERERERERERERERERERERERERXRERERERXSFVSR 147
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +2
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 8 ERERERERERERERERERERERE 76
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +3
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 6 ERERERERERERERERERERERE 74
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +1
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 16 ERERERERERERERERERERERE 84
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +2
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 20 ERERERERERERERERERERERE 88
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +1
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 10 ERERERERERERERERERERERE 78
Score = 30.8 bits (68), Expect = 0.64
Identities = 13/23 (56%), Positives = 18/23 (77%)
Frame = +2
Query: 169 EDEEEQSRESKRERYRERDRDKE 191
E E E+ RE +RER RER+R++E
Sbjct: 14 ERERERERERERERERERERERE 82
Score = 30.4 bits (67), Expect = 0.84
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 149 ERLEYRMQYKRGRSGRFAYDEDEEEQSRESKRERYRERDRDKEIVVRSTP 198
ER R + + R E E E+ RE +RER RER+R++ + P
Sbjct: 6 ERERERERERERERERERERERERERERERERERXRERERERXFCLSIPP 155
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 169 EDEEEQSRESKRERYRERDRDKEIVV 194
E E E+ RE +RER ER+R++E V+
Sbjct: 62 EREREREREREREREXEREREREXVL 139
Score = 28.5 bits (62), Expect = 3.2
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = +3
Query: 172 EEQSRESKRERYRERDRDKE 191
+E+ RE +RER RER+R++E
Sbjct: 3 QERERERERERERERERERE 62
>TC18339 weakly similar to GB|AAF21246.1|6648604|AF048705 ubiquitin-specific
protease {Arabidopsis thaliana;}, partial (12%)
Length = 500
Score = 32.7 bits (73), Expect = 0.17
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3
Query: 151 LEYRMQYKRGRSGRFAYDEDEEEQSRESKRERYRERDRDKEIVVRSTPLREMKTDD 206
L + K+G+ G + +E E E+ RE RER RE ++ E+ + S+ E+ D+
Sbjct: 27 LSLEREEKKGKPGDWVEEERERERERE--REREREGEKMTEVSMCSSSTSELSPDE 188
>TC8309 UP|O22306 (O22306) Nlj21, complete
Length = 1063
Score = 32.3 bits (72), Expect = 0.22
Identities = 24/91 (26%), Positives = 43/91 (46%), Gaps = 1/91 (1%)
Frame = +3
Query: 305 SSEYPEIEKVTTKKLD-LMDQFIRDKSLVSQANKLITQEENNEKNEEENEVEEDMNEIKA 363
+ + P IE TT+ ++ ++ + D+ V + T E ++ E E +E + ++
Sbjct: 375 TEDNPSIEAETTEVVEEVVTVTVTDEPKVEEK----TDGEAKKEATETKETKESADPVEV 542
Query: 364 LPPPEGFNEEQVEEEIKEQDQKEEEKIVQTE 394
P G E V +KE KEEEK+ + E
Sbjct: 543 QAPEAGEEPETVT--LKEDASKEEEKVAEPE 629
>BP034655
Length = 517
Score = 32.0 bits (71), Expect = 0.29
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 339 ITQEENNEKNEEENEVEEDMNEIKALPPPEGFNEEQVEEEIKEQDQKEEE 388
++ ++ E+ EEE E EE+ E EE+ EEE E+D +E+E
Sbjct: 130 LSDDDEEEEEEEEEEEEEEEEE-----------EEEEEEEEDEEDDEEDE 246
Score = 27.7 bits (60), Expect = 5.4
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = +1
Query: 371 NEEQVEEEIKEQDQKEEEKIVQTEGDLLDLTDSMTNQDYV 410
+EE+ EEE +E++++EEE+ + E + + + ++DY+
Sbjct: 142 DEEEEEEEEEEEEEEEEEEEEEEEEEDEEDDEEDEDEDYI 261
>TC12380 similar to GB|BAC55960.1|28071265|AB087408 actin binding protein
{Arabidopsis thaliana;} , partial (9%)
Length = 800
Score = 31.6 bits (70), Expect = 0.38
Identities = 19/68 (27%), Positives = 30/68 (43%)
Frame = +1
Query: 332 VSQANKLITQEENNEKNEEENEVEEDMNEIKALPPPEGFNEEQVEEEIKEQDQKEEEKIV 391
V Q N EN+E +++ EE E + + NEE EEE ++++ K I+
Sbjct: 376 VKQLNVKSPNSENDEARSRKHQDEEGTEEEQFKSFTDAINEEDSEEEEEKEEVKLISSII 555
Query: 392 QTEGDLLD 399
D D
Sbjct: 556 NRANDFED 579
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.314 0.131 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,512,335
Number of Sequences: 28460
Number of extensions: 101831
Number of successful extensions: 1319
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of query: 588
length of database: 4,897,600
effective HSP length: 95
effective length of query: 493
effective length of database: 2,193,900
effective search space: 1081592700
effective search space used: 1081592700
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)
Medicago: description of AC124966.14