TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124966.11 - phase: 0 
         (447 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8023                                                                 51  3e-07
TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F...    30  0.62
BP066906                                                               28  2.3
TC18841                                                                28  4.0
TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase  (L...    27  6.8
TC17683 weakly similar to UP|P93816 (P93816) F19P19.10, partial ...    27  8.9

>TC8023 
          Length = 1089

 Score = 51.2 bits (121), Expect = 3e-07
 Identities = 26/45 (57%), Positives = 32/45 (70%), Gaps = 1/45 (2%)
 Frame = +3

Query: 24 PFDIEAYKQKRDIEDTYIVNRFIQRRKELEEGSGSR-SRKYLNRD 67
          PFD+EAYK++ +IED YI N F +RR  + EG   R  RKYLNRD
Sbjct: 54 PFDVEAYKRQSEIEDRYIFNLFRKRRNLILEGYTPRVKRKYLNRD 188


>TC8460 similar to GB|AAN73294.1|25141199|BT002297 At5g12010/F14F18_180
           {Arabidopsis thaliana;}, partial (36%)
          Length = 880

 Score = 30.4 bits (67), Expect = 0.62
 Identities = 30/132 (22%), Positives = 56/132 (41%), Gaps = 1/132 (0%)
 Frame = +3

Query: 82  NEPTYGDAMFRRRYRMQKHVFLRIVGDLSITDNYFTQRVDAANKEGISPLAKCTTAMRML 141
           + P + +  FRR +RM K  F  I  +L   D+  T++ +   +E I    +    +  L
Sbjct: 357 SHPDFPEEEFRRSFRMSKATFEMICREL---DSAVTKK-NTMLREAIPVRQRVAVCIWRL 524

Query: 142 AYGVAADAVDEYIKIGGTTALECLRRFCKGIIRLYEEVYLRAPNQDDLQRILHVSE-MRG 200
           A G     V +   +G +T  + +   C  I  +    +LR P++  +       E + G
Sbjct: 525 ATGDPLRLVAKRFGLGISTCHKLVLEVCSAIKTVLMPKFLRWPDEAAMTAAKSEFEALSG 704

Query: 201 FPGMIGSIDCMH 212
            P + G++   H
Sbjct: 705 IPNIGGAMYTTH 740


>BP066906 
          Length = 386

 Score = 28.5 bits (62), Expect = 2.3
 Identities = 10/32 (31%), Positives = 16/32 (49%)
 Frame = +3

Query: 228 RGDKGTTTVILEAVASHDLWIWHAFFGCPGTL 259
           R ++  T  I+  + S   W+WH  FG P  +
Sbjct: 225 RHEENYTRYIIWILPSFGFWLWHVIFGFPNNI 320


>TC18841 
          Length = 568

 Score = 27.7 bits (60), Expect = 4.0
 Identities = 15/37 (40%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
 Frame = +2

Query: 210 CMHWEWKN-CPKAWEGQFTRGDKGTTTVILEAVASHD 245
           C HWEW+N C K  +G      +G    +L  VA HD
Sbjct: 326 CSHWEWENSCQKYLKG----FSQGYMKPLLAGVA*HD 424


>TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase  (LDH) ,
           partial (49%)
          Length = 866

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 400 AQPYSTEVLPTFANHARARSELRDPNVHHELQADLVKHI 438
           AQP + E LP  A+H R+ S L     HH  Q     H+
Sbjct: 602 AQPPAEEPLPLQADHTRSGSLLPGLCPHHRFQPRRCPHL 718


>TC17683 weakly similar to UP|P93816 (P93816) F19P19.10, partial (5%)
          Length = 561

 Score = 26.6 bits (57), Expect = 8.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 6   ITNLIPIYFQYHQRLSMDPF 25
           +T LIP+   +H+  SMDPF
Sbjct: 287 LTPLIPLQMFFHEYFSMDPF 346


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.323    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,737,889
Number of Sequences: 28460
Number of extensions: 101531
Number of successful extensions: 500
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of query: 447
length of database: 4,897,600
effective HSP length: 93
effective length of query: 354
effective length of database: 2,250,820
effective search space: 796790280
effective search space used: 796790280
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)