BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124965.10 + phase: 0
(1569 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV427422 180 2e-45
AV426985 172 4e-43
BP055130 167 8e-42
BP054462 150 2e-36
AV410570 79 1e-25
BP046863 102 4e-22
AV410603 99 7e-21
BG662087 94 1e-19
BF177840 89 4e-18
AU089582 73 7e-17
TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%) 51 2e-06
TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase regi... 49 8e-06
TC11563 48 1e-05
AU251673 47 2e-05
BP063723 43 4e-04
TC18698 42 6e-04
TC14806 similar to GB|AAM78057.1|21928057|AY125547 AT4g34180/F28... 36 0.041
BP073207 35 0.092
NP459451 NDX3 protein [Lotus japonicus] 35 0.092
AW720119 32 0.60
>AV427422
Length = 417
Score = 180 bits (456), Expect = 2e-45
Identities = 79/138 (57%), Positives = 102/138 (73%)
Frame = +1
Query: 1177 TGLPLSFGFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRD 1236
TGLP S G+ ++VVVDRLSK++HF+PLK Y+ + +A+ FV VV+LHG+P SI+SDRD
Sbjct: 4 TGLPKSKGYEAVLVVVDRLSKFSHFVPLKHPYTAKVIADIFVREVVRLHGVPLSIVSDRD 183
Query: 1237 KVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALT 1296
+F S FW+ LF+MQGT L MST YHP++DGQ+E VN+CLE YLRCF PK+W +
Sbjct: 184 PLFMSNFWKELFKMQGTKLKMSTAYHPESDGQTEVVNRCLETYLRCFIADQPKSWAHWVP 363
Query: 1297 WVELWYNTFLHTSLGMSP 1314
W E WYNT H S G +P
Sbjct: 364 WAEYWYNTSYHVSTGQTP 417
>AV426985
Length = 422
Score = 172 bits (436), Expect = 4e-43
Identities = 82/139 (58%), Positives = 102/139 (72%)
Frame = +1
Query: 330 PAIKRISPAEMQLRREKGLCYFCDDKFSFSHKCPNKQLMLLELDDDLDPPDTPSQTAVTS 389
P +K ISPAEMQLRREK LCY+CD+KFSF+HKCPNK LM+L+L D+ D DT +Q T+
Sbjct: 1 PKVKYISPAEMQLRREKNLCYWCDEKFSFNHKCPNKYLMMLQLTDENDSDDTSNQQVTTT 180
Query: 390 DTETQEVAEHHLSLNALKGATGMGVIRFKGYIGPISVSILLDGGSSESFIQPRIVHCLNL 449
++ V +HH SLNA++G TG+G IRF G IG ISV +L+DGGSS+ F+QP I L L
Sbjct: 181 ISDDSPVEDHHFSLNAMRGFTGVGTIRFTGQIGNISVQVLVDGGSSDCFLQPHIAKFLQL 360
Query: 450 PIEHTDKCNVLVGNGQHMK 468
PIE VLVGNGQ M+
Sbjct: 361 PIESKPNFKVLVGNGQKME 417
>BP055130
Length = 567
Score = 167 bits (423), Expect(2) = 8e-42
Identities = 73/112 (65%), Positives = 94/112 (83%)
Frame = +2
Query: 1184 GFTVIMVVVDRLSKYAHFMPLKADYSNRTVAEAFVNYVVKLHGMPKSIISDRDKVFTSKF 1243
GFTVI+VVVDRLSKY HF P +A+Y++ VAE FV+ +VKLHGMP++I+SDRDK FTS F
Sbjct: 179 GFTVIIVVVDRLSKYGHFAPHRANYTSSQVAETFVSTIVKLHGMPRAIVSDRDKAFTSAF 358
Query: 1244 WQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKAL 1295
W+H F++ GTTL+MS++YHPQTDGQ+EA+NKCLE+YLRCF + P+ W L
Sbjct: 359 WKHFFKLHGTTLNMSSSYHPQTDGQTEALNKCLELYLRCFVHETPRLWVSYL 514
Score = 21.9 bits (45), Expect(2) = 8e-42
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 1295 LTWVELWYNTFLHTSLG 1311
L W E YN+ TS+G
Sbjct: 516 LPWAEYCYNSSFQTSIG 566
>BP054462
Length = 422
Score = 150 bits (378), Expect = 2e-36
Identities = 70/140 (50%), Positives = 104/140 (74%)
Frame = +1
Query: 1303 NTFLHTSLGMSPFKALYGREPPMLTRYSVNNSDPTEVQQQLMDRDKLLVELKENLLRAQQ 1362
N+ + S MSPF+ALYGREPP+L + + S V + RD+LL +L+ NLL++Q
Sbjct: 1 NSNYNRSAKMSPFQALYGREPPVLLQGTTIPSKIAAVNDLQVGRDELLSDLRANLLKSQD 180
Query: 1363 VMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALRKNNKLGMRYFGPFTVIAKVGVVAY 1422
+M++ A+KKR+DV +++GD+V +KLQPYR+ S+A + N KL RY+GP+ ++AK+G VAY
Sbjct: 181 MMRTYANKKRRDVDYQIGDEVFLKLQPYRRRSLAKKMNEKLSPRYYGPYPIVAKIGAVAY 360
Query: 1423 KLQLPETARIHPVFHVSQLK 1442
+L+LP +R+HPVFHVS LK
Sbjct: 361 RLELPAHSRVHPVFHVSLLK 420
>AV410570
Length = 412
Score = 79.0 bits (193), Expect(2) = 1e-25
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = +2
Query: 313 PLLPTPPTRPMSHLQKNPAIKRISPAEMQLRREKGLCYFCDDKFSFSHKCPNKQLML 369
PLLP +P+ LQ P KRISPAEMQLRREKGLC+ CD+K+S++HKCPNKQLML
Sbjct: 41 PLLP----KPVPKLQ--PQAKRISPAEMQLRREKGLCFTCDEKYSWNHKCPNKQLML 193
Score = 56.2 bits (134), Expect(2) = 1e-25
Identities = 31/68 (45%), Positives = 38/68 (55%)
Frame = +3
Query: 371 ELDDDLDPPDTPSQTAVTSDTETQEVAEHHLSLNALKGATGMGVIRFKGYIGPISVSILL 430
+L D D P++PS HHLSLNA G+ G IRF+G I SV +LL
Sbjct: 249 QLQPDSDDPESPSH--------------HHLSLNAYNGSQGCATIRFQGSIAGKSVQVLL 386
Query: 431 DGGSSESF 438
DGGSS+SF
Sbjct: 387 DGGSSDSF 410
>BP046863
Length = 580
Score = 102 bits (255), Expect = 4e-22
Identities = 50/104 (48%), Positives = 74/104 (71%)
Frame = +1
Query: 1339 VQQQLMDRDKLLVELKENLLRAQQVMKSNADKKRKDVSFEVGDQVLVKLQPYRQSSVALR 1398
V + +RD LL+EL+ NLL+AQ M++ A+K R+ V ++VG+ V +KLQPY+ ++A R
Sbjct: 265 VNMLIEERDALLLELRGNLLKAQDQMRAQANKHRRYVDYQVGNWVFLKLQPYKLQNLAQR 444
Query: 1399 KNNKLGMRYFGPFTVIAKVGVVAYKLQLPETARIHPVFHVSQLK 1442
KN KL R++GPF V+ +V VAY L L +R+HPVFH+S L+
Sbjct: 445 KNQKLSPRFYGPFKVLERVVQVAY*LDLXSESRVHPVFHLSLLE 576
>AV410603
Length = 162
Score = 98.6 bits (244), Expect = 7e-21
Identities = 44/53 (83%), Positives = 49/53 (92%)
Frame = +1
Query: 684 TIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQKTAFRTHQG 736
T+KDSFPMPTVDELLDEL G+Q+F+KLDLRSGYHQIL+KPEDR KT FRTH G
Sbjct: 4 TVKDSFPMPTVDELLDELRGSQFFSKLDLRSGYHQILVKPEDRHKTVFRTHHG 162
>BG662087
Length = 373
Score = 94.4 bits (233), Expect = 1e-19
Identities = 46/119 (38%), Positives = 73/119 (60%)
Frame = +1
Query: 669 GTWRCCTDYRALNAITIKDSFPMPTVDELLDELHGAQYFTKLDLRSGYHQILLKPEDRQK 728
G WR DY LN KDS+P+P++D+L+D + + +D SGYHQI + P D K
Sbjct: 16 GKWRMWVDYTDLNKACPKDSYPLPSIDKLVDGASDNELLSLMDAYSGYHQIKMHPSDEDK 195
Query: 729 TAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYSPSWHSH 787
TAF T + +Y + +PFGL +A AT+Q LM+++F + + + V+ D+++V S +H
Sbjct: 196 TAFMTARVNYCYQTIPFGLKNAGATYQXLMDRVFXDXVGRNMEVYLDNMIVKSALRANH 372
>BF177840
Length = 410
Score = 89.4 bits (220), Expect = 4e-18
Identities = 53/132 (40%), Positives = 71/132 (53%), Gaps = 10/132 (7%)
Frame = +2
Query: 1230 SIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPK 1289
SI+SDRD F S FW+ L+ GT L STT HPQTDGQ+E VNK L LR +N K
Sbjct: 14 SIVSDRDTKFISHFWRTLWGKVGTKLLYSTTCHPQTDGQTEVVNKTLSTLLRSVLERNLK 193
Query: 1290 TWFKALTWVELWYNTFLHTSLGMSPFKALYGREP-------PMLTRYSVNNSD---PTEV 1339
W L +E YN +H++ SPF+ +YG P PM Y + + D E
Sbjct: 194 MWETWLPHIEFAYNRVVHSTTKHSPFEIVYGYNPLTPLDLLPMPNTYLLKHKDGKAKAEF 373
Query: 1340 QQQLMDRDKLLV 1351
++L ++ KL +
Sbjct: 374 VKRLHEKIKLQI 409
>AU089582
Length = 383
Score = 72.8 bits (177), Expect(2) = 7e-17
Identities = 36/68 (52%), Positives = 45/68 (65%)
Frame = +2
Query: 1214 AEAFVNYVVKLHGMPKSIISDRDKVFTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVN 1273
A+ +++ +V LHG+P SIISDR FTS FW+ GT L MST +HPQTDGQSE
Sbjct: 23 AKIYLDEIVSLHGVPVSIISDRGAQFTSHFWRSFQTALGTRLKMSTAFHPQTDGQSERTI 202
Query: 1274 KCLEMYLR 1281
+ LE LR
Sbjct: 203 QILEDMLR 226
Score = 32.7 bits (73), Expect(2) = 7e-17
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 1290 TWFKALTWVELWYNTFLHTSLGMSPFKALYGR 1321
+W + L+ +E YN +S+ M+PF+ALYGR
Sbjct: 252 SWDQYLSLMEFAYNNSYRSSI*MAPFEALYGR 347
>TC19412 similar to UP|Q84KB0 (Q84KB0) Pol protein, partial (7%)
Length = 519
Score = 50.8 bits (120), Expect = 2e-06
Identities = 23/45 (51%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +3
Query: 1399 KNNKLGMRYFGPFTVIAKVGVVAYKLQL-PETARIHPVFHVSQLK 1442
K KL R+ GPF V+ +VG V+Y+L L P+ + +HPVFHVS L+
Sbjct: 39 KKGKLSPRFIGPFEVLERVGSVSYRLALPPDLSAVHPVFHVSMLR 173
Score = 29.3 bits (64), Expect = 5.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 1482 RKVEQLLVKWKDMQNSEATWEDKQEMLDSYPNL 1514
+ V + V W+ EATWE + M + YP+L
Sbjct: 296 KDVGSVKVLWRGPSGEEATWEAEDIMREKYPHL 394
>TC11573 similar to UP|Q9M6N4 (Q9M6N4) Pol protein integrase region
(Fragment), partial (10%)
Length = 572
Score = 48.5 bits (114), Expect = 8e-06
Identities = 28/84 (33%), Positives = 41/84 (48%)
Frame = +2
Query: 1239 FTSKFWQHLFQMQGTTLSMSTTYHPQTDGQSEAVNKCLEMYLRCFTFKNPKTWFKALTWV 1298
FTSK Q G + S+ HPQT+GQ+EA NK + ++ ++ W L V
Sbjct: 23 FTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRWIDELPIV 202
Query: 1299 ELWYNTFLHTSLGMSPFKALYGRE 1322
YNT +S+ +PF YG +
Sbjct: 203 LWSYNTMPQSSIKETPF*LTYGAD 274
>TC11563
Length = 470
Score = 47.8 bits (112), Expect = 1e-05
Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Frame = +2
Query: 1484 VEQLLVKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNVM--SVEGPIDKSGAN 1541
V QLL++W+ N TWE + DS+P L DK+ GEGNVM V G K
Sbjct: 8 VPQLLIQWEGAAN--CTWELLSYIQDSFPQFALADKVTFYGEGNVMIKKVVGATSKGHVT 181
Query: 1542 DDMANKKG----LRRSYRIK 1557
D N K +RRS RI+
Sbjct: 182 MDPGNDKVEHNLVRRSSRIR 241
>AU251673
Length = 413
Score = 47.4 bits (111), Expect = 2e-05
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Frame = +2
Query: 147 DAERLIIASVHLEQEVVPWFQMVNRSRPFQS----WNDFTRALELDFGP-SIYDCPRASL 201
D + +AS LE W+ ++ R++P S W DF+ F P S+ D
Sbjct: 11 DTRAVELASFQLEGVARDWYNVLTRAKPVGSPPWTWADFSAEFMNRFLPQSVRDGFVRDF 190
Query: 202 FKLQQNK--SVNEYYLEFTALSNRV-YGLSNDALIDCFVSGLKDELRRDVMLHTPISIVK 258
+L+Q + +V+EY FT LS V Y L + + FV GLK+ L + V+ ++ +
Sbjct: 191 ERLEQAEGMTVSEYSAHFTHLSRYVPYPLLEEERVKRFVRGLKEYLFKSVVGSKSSTLSE 370
Query: 259 AVSLAKLFEEK 269
+SLA L E++
Sbjct: 371 VLSLALLVEQR 403
>BP063723
Length = 479
Score = 42.7 bits (99), Expect = 4e-04
Identities = 17/40 (42%), Positives = 28/40 (69%)
Frame = -3
Query: 1489 VKWKDMQNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNV 1528
++WKD+ E +WED ++LD +PN LED++ L+G +V
Sbjct: 477 IRWKDLPTFEDSWEDFCKLLDPFPNHQLEDQLNLQGGRDV 358
>TC18698
Length = 808
Score = 42.4 bits (98), Expect = 6e-04
Identities = 20/56 (35%), Positives = 37/56 (65%)
Frame = -2
Query: 726 RQKTAFRTHQGHYEWLVMPFGLTSAPATFQRLMNQLFQPLLRKCVLVFFDDILVYS 781
++KT + ++ +Y + VMP GL + T+QRLM+++F + K V V+ +D++V S
Sbjct: 807 KKKTTLKINRVNYYYQVMPLGLKNI*TTYQRLMDKIFHKQI*KNVEVYVEDMIVKS 640
>TC14806 similar to GB|AAM78057.1|21928057|AY125547 AT4g34180/F28A23_60
{Arabidopsis thaliana;}, partial (88%)
Length = 1267
Score = 36.2 bits (82), Expect = 0.041
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 1289 KTWFKALTWVELWYNTFLHTSLGMSPFKALYG--REPPM 1325
KTW A TWV +W +F+ L M PF L+G R PM
Sbjct: 324 KTWPGASTWVPVWVGSFILELLAMEPFFMLFGSHRNCPM 208
>BP073207
Length = 401
Score = 35.0 bits (79), Expect = 0.092
Identities = 20/58 (34%), Positives = 32/58 (54%), Gaps = 3/58 (5%)
Frame = -3
Query: 1507 MLDSYPNLNLEDKIVLEGEGNVM---SVEGPIDKSGANDDMANKKGLRRSYRIKGSHP 1561
+L +P LEDK+ +GEGNVM + +G +D ++ +RRS RI+ + P
Sbjct: 393 ILAHFPQFALEDKVTFDGEGNVMMKNTSQGHVDLD-PGQEVTRPISVRRSNRIRKTPP 223
>NP459451 NDX3 protein [Lotus japonicus]
Length = 665
Score = 35.0 bits (79), Expect = 0.092
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 1495 QNSEATWEDKQEMLDSYPNLNLEDKIVLEGEGNV 1528
Q EATWED + +P+ NLEDK+ L G V
Sbjct: 486 QFDEATWEDNITIKSQFPSFNLEDKVDLSAGGIV 587
>AW720119
Length = 221
Score = 32.3 bits (72), Expect = 0.60
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 285 PAQPHQHRAPFNPTRNDQNQTIEKAPNLPLLPTPPTRPMSH 325
P+Q H RA +P+ + +QT+ PN L+P P P H
Sbjct: 199 PSQAHXQRASQSPSESPLSQTLLSHPNHHLIPIPLHLPQIH 77
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.319 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,163,867
Number of Sequences: 28460
Number of extensions: 364124
Number of successful extensions: 2124
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 2077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2116
length of query: 1569
length of database: 4,897,600
effective HSP length: 102
effective length of query: 1467
effective length of database: 1,994,680
effective search space: 2926195560
effective search space used: 2926195560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Medicago: description of AC124965.10