BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124963.19 - phase: 0 /pseudo
(206 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC11743 similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20, parti... 28 1.1
AV410073 28 1.5
TC7840 similar to UP|AAQ72788 (AAQ72788) Hypersensitive-induced ... 27 1.9
TC10169 27 2.5
AW164060 27 2.5
TC19500 27 2.5
AW719998 26 4.3
TC14152 weakly similar to UP|AB18_PEA (Q06930) ABA-responsive pr... 26 4.3
TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P... 26 4.3
AV771861 26 5.6
CB829579 26 5.6
TC19547 similar to UP|Q9AXI4 (Q9AXI4) APETAL2-like protein, part... 26 5.6
TC16029 weakly similar to UP|Q9ZQ26 (Q9ZQ26) Expressed protein (... 26 5.6
TC14221 similar to GB|AAP37784.1|30725524|BT008425 At4g24690 {Ar... 26 5.6
AV770867 26 5.6
BP056473 25 7.3
TC14592 25 7.3
TC18828 homologue to PIR|A43350|A43350 formate-tetrahydrofolate ... 25 7.3
TC14584 similar to UP|Q39193 (Q39193) Protein kinase (Protein ki... 25 7.3
TC17684 25 9.6
>TC11743 similar to UP|Q94KD1 (Q94KD1) At1g05960/T21E18_20, partial (3%)
Length = 416
Score = 28.1 bits (61), Expect = 1.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -1
Query: 103 NCPNITHGIIFNSFSFPDAPPRVKSLVLSDTGLSQPNIPQ 142
NC ++T + SFSFP P R KS G N PQ
Sbjct: 302 NCQSLTKVWLEISFSFPSTPMRKKSNFNVKKGKKS*NTPQ 183
>AV410073
Length = 426
Score = 27.7 bits (60), Expect = 1.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +3
Query: 155 FSCNISNQFLSSIKVLPLHTLLLGIHLSWFVRLLISAA 192
F C+I+ Q L S+ P H L G+ LS+ LL SA+
Sbjct: 258 FFCSINVQILKSVLNEPQHGLSHGLSLSFPETLLFSAS 371
>TC7840 similar to UP|AAQ72788 (AAQ72788) Hypersensitive-induced response
protein, complete
Length = 1585
Score = 27.3 bits (59), Expect = 1.9
Identities = 10/29 (34%), Positives = 14/29 (47%)
Frame = -2
Query: 83 NLFHNLLYNWRHNLEEVFICNCPNITHGI 111
N+FH+ W N + C C N HG+
Sbjct: 1053 NIFHSTRSMWNEN--SIGFCRCTNFLHGV 973
>TC10169
Length = 642
Score = 26.9 bits (58), Expect = 2.5
Identities = 12/31 (38%), Positives = 18/31 (57%)
Frame = -1
Query: 74 LSSHSYISDNLFHNLLYNWRHNLEEVFICNC 104
L+S + SDNL HNL Y + + ++ C C
Sbjct: 516 LASDTPYSDNLHHNL*YEIQSPISWLYYCAC 424
>AW164060
Length = 406
Score = 26.9 bits (58), Expect = 2.5
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 124 RVKSLVLSDTGLSQPNIPQPYFLNSLTTIKLFSCNISNQFLSSIKVLPLHTLLLGIHL 181
++ ++ S G SQ +P P L+ L + C N L + L +LLL +HL
Sbjct: 67 KLSKMINSSAGFSQRKVP*PTHLSELQQLLSPLCGNLNLALPNTHSLRTLSLLLLLHL 240
>TC19500
Length = 448
Score = 26.9 bits (58), Expect = 2.5
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +2
Query: 6 SIPFLTSLVCSNVG-SMSRQDISAISRSFQMLEVLDLGHPNLFVDGA 51
S+PFL++L S + S ++ S+ S S Q+LE+ HP F+D A
Sbjct: 11 SLPFLSTLSSSQTKQNESFREFSSGSFSSQLLELWFSQHPQQFLDMA 151
>AW719998
Length = 476
Score = 26.2 bits (56), Expect = 4.3
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Frame = +3
Query: 165 SSIKVLPLHT----LLLGIHLSWFVRLLISAASNP 195
S+IK L L+T L+ + LSW R ++ +SNP
Sbjct: 87 SNIKTLTLNTNSLSLIYSLSLSWKCRKVMKCSSNP 191
>TC14152 weakly similar to UP|AB18_PEA (Q06930) ABA-responsive protein
ABR18, partial (92%)
Length = 827
Score = 26.2 bits (56), Expect = 4.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 140 IPQPYFLNSLTTIKLFSCNISNQFLSSIKVLPLHTLLL 177
+P+P+ + L + L+SC IS+ SS LH L++
Sbjct: 644 LPEPFSFSFLPLLLLWSCEISSHVCSS----SLHQLIM 745
>TC9193 similar to GB|AAN28890.1|23506061|AY143951 At4g02590/T10P11_13
{Arabidopsis thaliana;}, partial (59%)
Length = 1474
Score = 26.2 bits (56), Expect = 4.3
Identities = 14/42 (33%), Positives = 21/42 (49%), Gaps = 5/42 (11%)
Frame = -2
Query: 144 YFLNSLTTIKLFSCNISNQ-----FLSSIKVLPLHTLLLGIH 180
YFLN+ LFS + N+ F S I++L + + IH
Sbjct: 1455 YFLNNTQNASLFSARLGNKATIIHFTSKIQIL*CYITIKNIH 1330
>AV771861
Length = 387
Score = 25.8 bits (55), Expect = 5.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -1
Query: 122 PPRVKSLVLSDTGLSQPNIPQPYFLNSLTTIKLFSCNISNQFLSSIKVLP 171
PP+ + L LS LS IP F NSLT + L I + + +P
Sbjct: 378 PPKTQLLDLSRNLLSFDFIPSASFRNSLTWLDLNHHQIHGRLPVGLSAVP 229
>CB829579
Length = 540
Score = 25.8 bits (55), Expect = 5.6
Identities = 11/19 (57%), Positives = 14/19 (72%)
Frame = -1
Query: 182 SWFVRLLISAASNPPFGPF 200
SW V LLI+ A++ PF PF
Sbjct: 363 SWVV*LLIAPATHLPFSPF 307
>TC19547 similar to UP|Q9AXI4 (Q9AXI4) APETAL2-like protein, partial (11%)
Length = 463
Score = 25.8 bits (55), Expect = 5.6
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = +3
Query: 76 SHSYIS--DNLFHNLLYNWRHNLEEV 99
+HS S +NL +Y W+HN+E+V
Sbjct: 189 NHSICSH*NNLLFVSMYKWKHNIEKV 266
>TC16029 weakly similar to UP|Q9ZQ26 (Q9ZQ26) Expressed protein
(At2g24420/T28I24.15), partial (21%)
Length = 902
Score = 25.8 bits (55), Expect = 5.6
Identities = 9/17 (52%), Positives = 13/17 (75%)
Frame = +3
Query: 173 HTLLLGIHLSWFVRLLI 189
HT+ LGIH+ W + LL+
Sbjct: 597 HTICLGIHVLWLLYLLL 647
>TC14221 similar to GB|AAP37784.1|30725524|BT008425 At4g24690 {Arabidopsis
thaliana;}, partial (12%)
Length = 827
Score = 25.8 bits (55), Expect = 5.6
Identities = 19/69 (27%), Positives = 38/69 (54%), Gaps = 1/69 (1%)
Frame = -2
Query: 16 SNVGSMSRQDISAISRSFQMLEVLDLGHPNLFVDGAHPNTAKALINLSLSTPRMREI-NL 74
+++ + SR++I +SR +L L N+F H N + +L+ S++TP M + +
Sbjct: 685 TSINTRSRKEIRQLSR---VLGEYILHPQNMFHQHKHYNQSYSLLIKSITTPMMLPLFFI 515
Query: 75 SSHSYISDN 83
SS ++S +
Sbjct: 514 SSFLFLSSS 488
>AV770867
Length = 319
Score = 25.8 bits (55), Expect = 5.6
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 82 DNLFHNLL----YNWR-HNLEEVFICNCPNITHGIIFNSFSFPDA 121
D L H L + W HNL + +C C + F +F+FPD+
Sbjct: 177 DPLLHRTLCAFVFLWECHNLTFLTLCMCAAYVWPLNF*AFAFPDS 43
>BP056473
Length = 512
Score = 25.4 bits (54), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 80 ISDNLFHNLLYNWRHNLEEVFIC 102
I+ L L +WRH+L+ V+ C
Sbjct: 221 ITSQLISTLTDHWRHHLKTVYFC 289
>TC14592
Length = 601
Score = 25.4 bits (54), Expect = 7.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +2
Query: 143 PYFLNSLTTIKLFSCNISNQFLSSIKVLPLHTLLLGIHLSW 183
P ++LT K+ ++ L+SI+ L + T L GIH++W
Sbjct: 476 PIMNHTLTCFKM*H-SVHLYMLNSIRSLCVETTLQGIHVNW 595
>TC18828 homologue to PIR|A43350|A43350 formate-tetrahydrofolate ligase -
spinach {Spinacia oleracea;} , partial (49%)
Length = 946
Score = 25.4 bits (54), Expect = 7.3
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +2
Query: 157 CNISNQFLSSIKVLPLHTLLLGIHLSWFVRLL 188
C + + L + L LL+GI L W +RLL
Sbjct: 434 CRL*KELLFLFMPVHLQILLMGILLLWLIRLL 529
>TC14584 similar to UP|Q39193 (Q39193) Protein kinase (Protein kinase, 41K)
, partial (10%)
Length = 641
Score = 25.4 bits (54), Expect = 7.3
Identities = 8/28 (28%), Positives = 14/28 (49%)
Frame = -1
Query: 86 HNLLYNWRHNLEEVFICNCPNITHGIIF 113
+ + YN R+ + + C N HG +F
Sbjct: 617 YEICYNTRYQITNTYTSKCNNYVHGKLF 534
>TC17684
Length = 721
Score = 25.0 bits (53), Expect = 9.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 144 YFLNSLTTIKLFSCNISNQFLSSIKVLPLHTLLLGIHLSWFVRLLISAASN 194
Y L L IK S +S +F ++ K T+ IH+ F++LLIS N
Sbjct: 199 YLLIHLAEIKCLSM-VSTRFQATRKCCGFSTV---IHIDHFIQLLISCPFN 59
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.324 0.139 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,687,521
Number of Sequences: 28460
Number of extensions: 80084
Number of successful extensions: 633
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of query: 206
length of database: 4,897,600
effective HSP length: 86
effective length of query: 120
effective length of database: 2,450,040
effective search space: 294004800
effective search space used: 294004800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)
Medicago: description of AC124963.19