TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124963.11 - phase: 0 /pseudo
         (168 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ...    30  0.28
TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial ...    28  1.1
TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%)     27  1.8
TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%)     27  1.8

>TC14308 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (96%)
          Length = 764

 Score = 29.6 bits (65), Expect = 0.28
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = -1

Query: 119 LLDTLNIIDLVGLFTLLAFLMFMIFNSSNSL--EILRSLG 156
           LL  L  +DLVGL+ LLA L+ ++  S  +L  ++L  LG
Sbjct: 290 LLQDLEDVDLVGLYALLASLLLLVSGSGCALLGKLLPGLG 171


>TC14307 homologue to UP|H2B_GOSHI (O22582) Histone H2B, partial (90%)
          Length = 701

 Score = 27.7 bits (60), Expect = 1.1
 Identities = 17/40 (42%), Positives = 24/40 (59%), Gaps = 2/40 (5%)
 Frame = -2

Query: 119 LLDTLNIIDLVGLFTLLAFLMFMIFNSSNSL--EILRSLG 156
           LL  L  +DLVGL  LLA L+ ++  S  +L  ++L  LG
Sbjct: 280 LLQHLEDVDLVGLHALLASLLLLVSGSGCALLGKLLPGLG 161


>TC14310 homologue to UP|Q9M3H6 (Q9M3H6) Histone H2B, partial (92%)
          Length = 502

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 18/47 (38%), Positives = 27/47 (57%)
 Frame = -3

Query: 119 LLDTLNIIDLVGLFTLLAFLMFMIFNSSNSLEILRSLGHGQRHYYLQ 165
           LL  L  +DLVGL  LLA L+ ++  +S   ++L  LG   R  +L+
Sbjct: 242 LLQNLEDVDLVGLDALLA-LLLLLLAASFLRDLLLGLGFLLRRGFLR 105


>TC14448 homologue to UP|Q9M531 (Q9M531) Histone H2A, partial (95%)
          Length = 715

 Score = 26.9 bits (58), Expect = 1.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 122 TLNIIDLVGLFTLLAFLMFMIFNSSNSLEIL 152
           TL+++DLV L TLL FL   +    + LE+L
Sbjct: 220 TLSVLDLVLLCTLLLFLSISLLRCLSWLEML 312


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.362    0.162    0.552 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,769,208
Number of Sequences: 28460
Number of extensions: 35933
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of query: 168
length of database: 4,897,600
effective HSP length: 84
effective length of query: 84
effective length of database: 2,506,960
effective search space: 210584640
effective search space used: 210584640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (22.0 bits)
S2: 52 (24.6 bits)