TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124963.10 - phase: 0 /pseudo
         (214 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV767121                                                               57  3e-09
TC13572                                                                54  2e-08
AV780221                                                               46  4e-06
BP041113                                                               32  0.064
TC16351 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin r...    27  3.5
BU494375                                                               27  3.5
TC9788 similar to PIR|T47605|T47605 RING finger-like protein - A...    26  4.6
AV426151                                                               26  6.0
TC11762                                                                26  6.0
BP044185                                                               26  6.0
BP041825                                                               25  7.8
BP065311                                                               25  7.8
TC9254 UP|CAE45592 (CAE45592) Transcription factor homolog BTF3-...    25  7.8
AV412404                                                               25  7.8
CB829188                                                               25  7.8

>AV767121 
          Length = 525

 Score = 56.6 bits (135), Expect = 3e-09
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
 Frame = +2

Query: 122 LVDRDSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAAL---PSEGWFHNNVSRSLGDG 178
           L + DSLW RV+ A+        C     GS+WW +I +L    ++GWF + + + +G+G
Sbjct: 296 LTEPDSLWRRVIEAQPDHYS---C-----GSSWWNDILSLCPEDADGWFSSGLKKLVGEG 451

Query: 179 SSVLFWTDVWVGELSLHDRFSRLY 202
               FW++ W+G   L  RF RLY
Sbjct: 452 DQTKFWSEDWLGSGLLSARFRRLY 523


>TC13572 
          Length = 534

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = -3

Query: 129 WFRVLAARNGVEGGNLCSGGRDGSAWWRNI--AALPSEGWFHNNVSRSLGDGSSVLFWTD 186
           W RV+ A+ G +GG  C+   + S+WWR++  A     GWF   V + L  G+   FW +
Sbjct: 478 WCRVVLAKYG-DGG--CT---NISSWWRDVQTAGGGENGWFEEGVHKVLRSGNHTRFWLE 317

Query: 187 VWVGELSLHDRFSRLYELSLLKGKTI 212
            W G   L +++ RLY LS LK  +I
Sbjct: 316 NWTGVGILREKYYRLYNLSKLKWASI 239


>AV780221 
          Length = 461

 Score = 46.2 bits (108), Expect = 4e-06
 Identities = 22/76 (28%), Positives = 39/76 (50%), Gaps = 6/76 (7%)
 Frame = +3

Query: 121 VLVDRDSLWFRVLAAR--NGVEGGNLCSGGRDGSAWWRNIAALPSE----GWFHNNVSRS 174
           +L +RD LW++VL  +  N +         +  S+WW ++ +   E    GW    + R 
Sbjct: 255 MLKERDGLWYKVLLIKYKNAIP--------QSASSWWNDLHSTCFEDGGGGWMQRGLCRR 410

Query: 175 LGDGSSVLFWTDVWVG 190
           +G+G+ V FW + W+G
Sbjct: 411 IGEGTEVKFWNENWLG 458


>BP041113 
          Length = 503

 Score = 32.3 bits (72), Expect = 0.064
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 183 FWTDVWVGELSLHDRFSRLYELS 205
           FWT+ W+G  +L DR+ RL+ LS
Sbjct: 1   FWTEDWIGMGTLRDRYYRLFNLS 69


>TC16351 similar to UP|Q84TQ7 (Q84TQ7) GIA/RGA-like gibberellin response
           modulator, partial (11%)
          Length = 756

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
 Frame = +3

Query: 69  YFKFFFFFWG---RGERRPQ 85
           +F FFFFFWG     ER P+
Sbjct: 165 FFNFFFFFWGCQKNEERSPR 224


>BU494375 
          Length = 601

 Score = 26.6 bits (57), Expect = 3.5
 Identities = 22/81 (27%), Positives = 30/81 (36%)
 Frame = +2

Query: 129 WFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSLGDGSSVLFWTDVW 188
           W+    A+   E G    G  +  +WW        E W  +   R      SVL WTD W
Sbjct: 47  WWEKYDAKGWTEKGAHKYGRLNEQSWW--------EKWGEHYDGRE-----SVLKWTDKW 187

Query: 189 VGELSLHDRFSRLYELSLLKG 209
             E  L  ++   +E    KG
Sbjct: 188 -AETELGTKWGDKWEERFFKG 247


>TC9788 similar to PIR|T47605|T47605 RING finger-like protein - Arabidopsis
           thaliana {Arabidopsis thaliana;}, partial (6%)
          Length = 696

 Score = 26.2 bits (56), Expect = 4.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 122 LVDRDSLWFRVLAARNGVEGGNLCSGGRDGSAW 154
           L+D+  +W  +L         +LC+ G D S+W
Sbjct: 396 LIDQHQVWTNLLQVSPSPNASSLCALGYDFSSW 494


>AV426151 
          Length = 331

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 13/28 (46%), Positives = 18/28 (63%), Gaps = 1/28 (3%)
 Frame = +2

Query: 62  YCLLY*IYFKFFFFFWGRGE-RRPQENY 88
           +C LY  +F+F +F  GRG+ RR   NY
Sbjct: 224 HCSLYFPHFRFLWF*NGRGDNRRGARNY 307


>TC11762 
          Length = 601

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 18/57 (31%), Positives = 28/57 (48%)
 Frame = +2

Query: 119 EVVLVDRDSLWFRVLAARNGVEGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSRSL 175
           E+VL D DS W  +L  R  V    +C G    +  W+ +A  PS  + H ++  +L
Sbjct: 278 EIVLPD-DSRWPFLL--RFPVSSFGICLGVSSQAILWKTLATSPSTEFLHISLKVNL 439


>BP044185 
          Length = 575

 Score = 25.8 bits (55), Expect = 6.0
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 35  WFYPLYISWFTNWREC*SVGVLGRSVRYC 63
           W +  + SWF +W  C + GV   S+  C
Sbjct: 339 WMWCWFRSWFWSWPCCETRGVESNSILCC 425


>BP041825 
          Length = 554

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 12/32 (37%), Positives = 16/32 (49%), Gaps = 1/32 (3%)
 Frame = +2

Query: 145 CSGGRD-GSAWWRNIAALPSEGWFHNNVSRSL 175
           C G    G  WW  I    +  WFH+N ++SL
Sbjct: 428 CRGNESAGKPWW*EIGETHAH-WFHHNGTKSL 520


>BP065311 
          Length = 520

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 18/50 (36%), Positives = 24/50 (48%)
 Frame = +1

Query: 13  FGGGKCS*FVVVRSGNGVELQGWFYPLYISWFTNWREC*SVGVLGRSVRY 62
           F GG+     +V+  N   LQ   YP+ ISW TN R    V  L   ++Y
Sbjct: 250 FNGGQAHI*QLVKPRN---LQYSRYPIRISW*TNVRSASPVTALTSGLKY 390


>TC9254 UP|CAE45592 (CAE45592) Transcription factor homolog BTF3-like
           protein, complete
          Length = 758

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 11/34 (32%), Positives = 15/34 (43%)
 Frame = +3

Query: 140 EGGNLCSGGRDGSAWWRNIAALPSEGWFHNNVSR 173
           E G +   GR  S WW+  +    EG   +N  R
Sbjct: 48  ESGKIDEDGRFSSNWWKGYSEKKEEGCSQDNNHR 149


>AV412404 
          Length = 386

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 13/34 (38%), Positives = 15/34 (43%), Gaps = 1/34 (2%)
 Frame = -1

Query: 123 VDRDSLWF-RVLAARNGVEGGNLCSGGRDGSAWW 155
           V R   WF ++L   NG      C G R G  WW
Sbjct: 197 VKRGCYWFWKLLLGLNG------CGGRRGGKGWW 114


>CB829188 
          Length = 236

 Score = 25.4 bits (54), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 136 RNGVEGGNLCSGGRDGSAWWRNI 158
           R G+  G  C GG  G  +WR +
Sbjct: 199 RRGLRKGCACGGGGRGKRFWRRV 131


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.339    0.152    0.545 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,870,519
Number of Sequences: 28460
Number of extensions: 84091
Number of successful extensions: 815
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of query: 214
length of database: 4,897,600
effective HSP length: 86
effective length of query: 128
effective length of database: 2,450,040
effective search space: 313605120
effective search space used: 313605120
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 53 (25.0 bits)