TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124958.16 + phase: 0 
         (248 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP041105                                                               46  5e-06
TC14894 weakly similar to UP|Q9LD82 (Q9LD82) ESTs AU029648, part...    40  3e-04
BP053014                                                               27  3.3
TC11690 similar to UP|6PGL_DROME (Q9VZ64) Potential 6-phosphoglu...    27  3.3
TC18418                                                                27  4.3
TC19109 similar to UP|Q84LE0 (Q84LE0) Phytocyanin protein, PUP2,...    26  5.6
AU251720                                                               26  7.3
TC8660 similar to UP|AAR28754 (AAR28754) Bax inhibitor, partial ...    25  9.5

>BP041105 
          Length = 537

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 27/59 (45%), Positives = 37/59 (61%), Gaps = 3/59 (5%)
 Frame = -3

Query: 190 VVKFSGVASDEVVKEKVEKLRLSLERDGFKVIGDFLLGRYNPP---WTLPMFRTNEVMI 245
           V+KFSG  +++VV+EK + LR ++ +DG K     LL RYN P   WT  M   NEV+I
Sbjct: 508 VIKFSGKPTEDVVREKEKTLRSNIMKDGLKPELGCLLARYNDPGRTWTFTM--RNEVLI 338


>TC14894 weakly similar to UP|Q9LD82 (Q9LD82) ESTs AU029648, partial (84%)
          Length = 982

 Score = 40.4 bits (93), Expect = 3e-04
 Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 2/160 (1%)
 Frame = +3

Query: 56  VETPKYEVTKTTQDYEIRIYAPSV--AAEVTYDPSQFKGNKDGGFMVLANYIGALGNPQN 113
           +E P Y+V +    YEIR Y  +V  +     D S  +  +  GF+ L NYI      +N
Sbjct: 147 IECPSYDVIQVGNGYEIRRYNSTVWISNSPIQDISLVEATRT-GFLRLFNYI----QGKN 311

Query: 114 TKPEKIAMTAPVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKAEEAPKP 173
              +KI MTAPV+++ S        P    S             F++     K  +A  P
Sbjct: 312 DYSQKIEMTAPVLSEVSPS----DGPFCESS-------------FVVSFFVPKVNQANPP 440

Query: 174 TDERVVIREEGERKYGVVKFSGVASDEVVKEKVEKLRLSL 213
             + + ++        V +F G  SD  V E+   L+ S+
Sbjct: 441 PAKGLHVQRWKPVNVAVRQFGGFVSDASVGEEAAALKASI 560


>BP053014 
          Length = 441

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 16/45 (35%), Positives = 23/45 (50%)
 Frame = -3

Query: 165 EKAEEAPKPTDERVVIREEGERKYGVVKFSGVASDEVVKEKVEKL 209
           E+A   P P     ++ EEGE  YG  +   +  +E+VKE   KL
Sbjct: 232 EEAVLLPNPG----MLTEEGEEGYGKPRVMELGEEELVKEGCRKL 110


>TC11690 similar to UP|6PGL_DROME (Q9VZ64) Potential
           6-phosphogluconolactonase  (6PGL) , partial (16%)
          Length = 542

 Score = 26.9 bits (58), Expect = 3.3
 Identities = 20/60 (33%), Positives = 27/60 (44%), Gaps = 6/60 (10%)
 Frame = +3

Query: 108 LGNPQNTKPEKIAMTAPVITKGSAEKIAMT------APVVTKSSEEGERNKMVTMQFILP 161
           L N     PE+I  T PVI   SA  IAM       A  V  + E+G  +  + +Q + P
Sbjct: 9   LKNAPKPPPERITFTLPVI--NSASNIAMVVTGAGKADAVYSALEKGPTDYKLPVQLVSP 182


>TC18418 
          Length = 437

 Score = 26.6 bits (57), Expect = 4.3
 Identities = 29/130 (22%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
 Frame = +3

Query: 20  ATSTTHKNLLLPTSFNSHFTLSHSRSIMGMVFGKIGVETPKYEVTKTTQDYEIRIYAPSV 79
           ++S +HK L     F SHF+LS S ++             + +    T    + +  PS 
Sbjct: 93  SSSHSHKTLSFFIEFVSHFSLSLSLTV-------------RQKQRTRTLSLSLSLAFPSF 233

Query: 80  AAEVTYDPSQFKGNKDGGFMVLANYIGALGNPQNTKPEKIAMTAPVITKGSAEK---IAM 136
           A  ++   S    +  GG    +N+ G+    +++ P ++   AP  +  S ++   + M
Sbjct: 234 AIMISSRCSFLSNSGLGG---SSNFSGS--QRRHSAPLRVLCMAPSSSTKSGDRNGSVVM 398

Query: 137 TAPVVTKSSE 146
             P +T S E
Sbjct: 399 ETPTLTPSKE 428


>TC19109 similar to UP|Q84LE0 (Q84LE0) Phytocyanin protein, PUP2, partial
           (5%)
          Length = 479

 Score = 26.2 bits (56), Expect = 5.6
 Identities = 9/24 (37%), Positives = 18/24 (74%)
 Frame = +2

Query: 112 QNTKPEKIAMTAPVITKGSAEKIA 135
           ++ KP+K   TAPV++ G+ E+++
Sbjct: 227 KDPKPKKTDATAPVVSSGARERVS 298


>AU251720 
          Length = 374

 Score = 25.8 bits (55), Expect = 7.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 7   IQISYPLLYKGLKATSTTHKNLLLPTSFNSH 37
           +++SY      L AT  +HK  L+P +F  H
Sbjct: 296 LEVSYSPCRHPLAATEKSHKQALVP*NFQKH 204


>TC8660 similar to UP|AAR28754 (AAR28754) Bax inhibitor, partial (97%)
          Length = 1053

 Score = 25.4 bits (54), Expect = 9.5
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -3

Query: 108 LGNPQNTKPEKIAMTAPVITKGSAEKIAMTAPVVTKSSEEGERNKMVTMQFILPSSYEKA 167
           + NP++T+P +   +  + TK + EK A    V T +       KM      +  S +  
Sbjct: 529 MDNPEDTRPPRYKYSLRLATKAAPEKHAKAREVPTNAL------KMRLGSI*MAKSIKGP 368

Query: 168 EEAPKPTDE 176
            EAP  +DE
Sbjct: 367 IEAP*NSDE 341


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.315    0.133    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,442,876
Number of Sequences: 28460
Number of extensions: 39506
Number of successful extensions: 168
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of query: 248
length of database: 4,897,600
effective HSP length: 88
effective length of query: 160
effective length of database: 2,393,120
effective search space: 382899200
effective search space used: 382899200
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)