BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124953.9 - phase: 0
(95 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC15093 28 0.20
TC13602 weakly similar to UP|Q84QD8 (Q84QD8) Avr9/Cf-9 rapidly e... 27 0.45
TC9396 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragmen... 27 0.45
BP052264 26 1.0
TC13562 weakly similar to UP|Q9SNJ4 (Q9SNJ4) ESTs AU065232(E6085... 26 1.3
BP077434 26 1.3
TC14167 similar to UP|O48642 (O48642) Class III acidic endochiti... 25 1.7
BP041974 25 1.7
TC18956 25 1.7
BP056961 25 2.2
TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like pro... 25 2.2
BP037753 25 2.2
CB827365 25 2.2
AV409769 25 2.9
TC14949 25 2.9
TC17958 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase... 24 3.8
CB828176 24 3.8
TC9257 24 3.8
TC8009 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerat... 24 3.8
TC13772 24 3.8
>TC15093
Length = 611
Score = 28.5 bits (62), Expect = 0.20
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 62 HNGMYYVLSSICSFCCINLILYYFTTLLVCIPF 94
H G YV+ I F C+ L +Y+F L CI F
Sbjct: 389 HEG--YVIILIYGFICLILQIYFFRNLAACIIF 481
>TC13602 weakly similar to UP|Q84QD8 (Q84QD8) Avr9/Cf-9 rapidly elicited
protein 275 (Fragment), partial (26%)
Length = 556
Score = 27.3 bits (59), Expect = 0.45
Identities = 13/31 (41%), Positives = 18/31 (57%)
Frame = +2
Query: 64 GMYYVLSSICSFCCINLILYYFTTLLVCIPF 94
G+ + SS CSF IL + LL+C+PF
Sbjct: 20 GLLLITSSFCSF-----ILSSLSQLLICVPF 97
>TC9396 similar to UP|Q9ZRB9 (Q9ZRB9) Homeobox 1 protein (Fragment),
partial (68%)
Length = 1138
Score = 27.3 bits (59), Expect = 0.45
Identities = 11/29 (37%), Positives = 17/29 (57%)
Frame = +3
Query: 27 DVVEQSKARQKYLAHTNSSSDGGDVRWYF 55
DV E+S A ++ A DGG+ RW++
Sbjct: 3 DVAERSAAAAEFHAPATGDFDGGEERWWW 89
>BP052264
Length = 526
Score = 26.2 bits (56), Expect = 1.0
Identities = 17/51 (33%), Positives = 24/51 (46%), Gaps = 3/51 (5%)
Frame = +2
Query: 34 ARQKYLAHTNSSSDGGDVRWYFC---KTSLAHNGMYYVLSSICSFCCINLI 81
A QK+ TN S+ G + K G+ ++S IC FCCI+ I
Sbjct: 281 ASQKFFQSTNCSNCGRKLSTETSVR*KAKAGICGLTGLVSVICFFCCISYI 433
>TC13562 weakly similar to UP|Q9SNJ4 (Q9SNJ4) ESTs AU065232(E60855), partial
(28%)
Length = 575
Score = 25.8 bits (55), Expect = 1.3
Identities = 13/45 (28%), Positives = 21/45 (45%), Gaps = 3/45 (6%)
Frame = +2
Query: 53 WYFCKTSLAHNGMYYVLSS---ICSFCCINLILYYFTTLLVCIPF 94
W FC+ G + + I +FC I LI+ +L+C+ F
Sbjct: 344 WQFCR*ENPRKGFIILFRTNNYIVNFCNIKLIVLSLLFILICL*F 478
>BP077434
Length = 375
Score = 25.8 bits (55), Expect = 1.3
Identities = 7/18 (38%), Positives = 11/18 (60%)
Frame = -1
Query: 75 FCCINLILYYFTTLLVCI 92
FCC+ +LY+ L C+
Sbjct: 228 FCCVTSLLYFLAALFYCL 175
>TC14167 similar to UP|O48642 (O48642) Class III acidic endochitinase
precursor , partial (88%)
Length = 1336
Score = 25.4 bits (54), Expect = 1.7
Identities = 7/26 (26%), Positives = 17/26 (64%)
Frame = +1
Query: 67 YVLSSICSFCCINLILYYFTTLLVCI 92
Y + S+C F C ++++ ++L +C+
Sbjct: 1153 YAIQSMCLFSCSGILIWTCSSLRLCV 1230
>BP041974
Length = 468
Score = 25.4 bits (54), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 25 LKDVVEQSKARQKYLAHTNSSS 46
++DV+E K R KYL HT S
Sbjct: 18 IEDVIEICKIRWKYLKHTKGYS 83
>TC18956
Length = 723
Score = 25.4 bits (54), Expect = 1.7
Identities = 14/42 (33%), Positives = 24/42 (56%), Gaps = 6/42 (14%)
Frame = -3
Query: 4 GSNTPVLLPDLL------KNTPSNIARLKDVVEQSKARQKYL 39
G+++P+ + +L NTPS IARLK ++ + + K L
Sbjct: 238 GNSSPLYIYSMLFCIHR*NNTPSLIARLKRIIRNTFFQHKLL 113
>BP056961
Length = 508
Score = 25.0 bits (53), Expect = 2.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 67 YVLSSICSFCCINLILYYFTT 87
Y +C F + L+LYYFTT
Sbjct: 341 YESMMMCYFFFLKLLLYYFTT 279
>TC8616 UP|Q94FN1 (Q94FN1) Phosphatidylinositol transfer-like protein III,
complete
Length = 2302
Score = 25.0 bits (53), Expect = 2.2
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 12/38 (31%)
Frame = +3
Query: 66 YYVLSSICSFCCINLI------------LYYFTTLLVC 91
Y V +C FCC +L LY+F+ L+ C
Sbjct: 2160 YLVKHELCRFCCGSLFIL*FCLLLLYEKLYFFSFLITC 2273
>BP037753
Length = 539
Score = 25.0 bits (53), Expect = 2.2
Identities = 15/42 (35%), Positives = 19/42 (44%), Gaps = 1/42 (2%)
Frame = +1
Query: 8 PVLLPDLLKNTPSNIARLKDVVEQSK-ARQKYLAHTNSSSDG 48
PVL PD++ + SNI V +SK QK H G
Sbjct: 229 PVLAPDVILSLASNIKLTSQVTNESKLVWQKIFYHKAECGTG 354
>CB827365
Length = 559
Score = 25.0 bits (53), Expect = 2.2
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = -1
Query: 56 CKTSLAHNGMYYVL--SSICSFCCINLILYYFTTLLV 90
C + G YY +IC CC + L F +LL+
Sbjct: 223 CSLLIGTGGSYYKFFTMNICGLCCYSCRLISFMSLLL 113
>AV409769
Length = 424
Score = 24.6 bits (52), Expect = 2.9
Identities = 13/31 (41%), Positives = 17/31 (53%), Gaps = 1/31 (3%)
Frame = +2
Query: 56 CKTSLAHNGMYY-VLSSICSFCCINLILYYF 85
C T L + +Y V S +C+ CC L L YF
Sbjct: 59 C*THLRNCAVYTSVDSKVCTLCCEFLYLIYF 151
>TC14949
Length = 583
Score = 24.6 bits (52), Expect = 2.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 68 VLSSICSFCCINLILYY--FTTLLVCIPF 94
+ IC+ C + LILYY T CI F
Sbjct: 343 IFKKICNVCIL*LILYYCRLTVSYTCI*F 429
>TC17958 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase-like
protein, partial (19%)
Length = 502
Score = 24.3 bits (51), Expect = 3.8
Identities = 18/64 (28%), Positives = 32/64 (49%)
Frame = +1
Query: 4 GSNTPVLLPDLLKNTPSNIARLKDVVEQSKARQKYLAHTNSSSDGGDVRWYFCKTSLAHN 63
G+ +PV + +L+K + + + + KA++K L + GDVR+ SLAH
Sbjct: 28 GNTSPVPVTELVK--------ILEKLLKVKAKKKVLPMPRN----GDVRFTHANISLAHR 171
Query: 64 GMYY 67
+ Y
Sbjct: 172DLGY 183
>CB828176
Length = 363
Score = 24.3 bits (51), Expect = 3.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 38 YLAHTNSSSDGGDVRWYF 55
YL H NSS + +V W+F
Sbjct: 323 YLFHQNSSGETREVLWWF 270
>TC9257
Length = 648
Score = 24.3 bits (51), Expect = 3.8
Identities = 11/40 (27%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Frame = -3
Query: 57 KTSLAHNGMYYVL---SSICSFCCINLILYYFTTLLVCIP 93
K ++ N + +V+ ++C+F ++ +L YF+ ++CIP
Sbjct: 283 KMNIMLNELQFVI*VSKALCNFILLSQVLIYFS--ILCIP 170
>TC8009 homologue to UP|Q9LKJ2 (Q9LKJ2) Cytosolic phosphoglycerate kinase ,
complete
Length = 1697
Score = 24.3 bits (51), Expect = 3.8
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Frame = -2
Query: 45 SSDGGDVRWYFCKTSLAH---------NGMYYVLSSICSFCCINLILY 83
++ GGDV CK +L H +G Y + + +C F L Y
Sbjct: 1321 TATGGDVAHLVCKPNLLHSSNRVTSSNDGCYSLAT*LCQFLGYGLCSY 1178
>TC13772
Length = 409
Score = 24.3 bits (51), Expect = 3.8
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = +2
Query: 54 YFCKTSLAHNGMYYVLSSICSFCCIN------LILYYFTTLLVCI 92
++C SL G+ +L CS+CC + +Y +LL C+
Sbjct: 140 WWCSNSLRA*GLCQLLF*RCSYCCCACWLLSWTVSFYPGSLLPCV 274
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,218,291
Number of Sequences: 28460
Number of extensions: 36137
Number of successful extensions: 316
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of query: 95
length of database: 4,897,600
effective HSP length: 71
effective length of query: 24
effective length of database: 2,876,940
effective search space: 69046560
effective search space used: 69046560
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)
Medicago: description of AC124953.9