TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124953.2 + phase: 0 
         (53 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombin...    45  3e-06
TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination p...    45  3e-06
TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like prote...    41  6e-05
TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)     38  5e-04
BP065488                                                               37  0.001
BP046665                                                               31  0.044
TC10293 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (19%)         28  0.49
TC17624                                                                27  0.64
TC9013                                                                 27  0.84
TC18533 weakly similar to UP|Q9LUL3 (Q9LUL3) Genomic DNA, chromo...    23  9.3

>TC8084 similar to UP|PIF1_YEAST (P07271) DNA repair and recombination
           protein PIF1, mitochondrial precursor, partial (4%)
          Length = 560

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +1

Query: 19  RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
           RV SRKGLK+L+ DE     + T NVVY+EVF+N+
Sbjct: 343 RVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 447


>TC8086 similar to UP|DMC1_HUMAN (Q14565) Meiotic recombination protein
           DMC1/LIM15 homolog, partial (12%)
          Length = 628

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = +3

Query: 19  RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
           RV SRKGLK+L+ DE     + T NVVY+EVF+N+
Sbjct: 372 RVRSRKGLKLLVLDEEEKVTNTTKNVVYREVFENI 476


>TC15490 weakly similar to UP|Q9LTU4 (Q9LTU4) Helicase-like protein, partial
           (8%)
          Length = 634

 Score = 40.8 bits (94), Expect = 6e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 19  RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
           RV SRK LK+L+ DE     + T NVVY+E+F+N+
Sbjct: 371 RVRSRK*LKLLVLDEEEKMTNTTKNVVYREIFENI 475


>TC14212 similar to UP|Q9FN61 (Q9FN61) Gb|AAF07369.1, partial (10%)
          Length = 613

 Score = 37.7 bits (86), Expect = 5e-04
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = +2

Query: 19 RVTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
          RV S+ GLKILI+ +       T N+VYKEVFQ +
Sbjct: 20 RVKSKDGLKILISSDGTSTPGATKNIVYKEVFQKI 124


>BP065488 
          Length = 439

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 17/34 (50%), Positives = 23/34 (67%)
 Frame = -1

Query: 20  VTSRKGLKILITDENGDCIDNTTNVVYKEVFQNV 53
           V SRKGLK+L+  E     + T N VY+EVF+N+
Sbjct: 169 VRSRKGLKLLVLGEEEKVTNATKNEVYQEVFKNI 68


>BP046665 
          Length = 524

 Score = 31.2 bits (69), Expect = 0.044
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -2

Query: 22  SRKGLKILITDENGDCIDNTTNVVY 46
           SRKGLK+L+ DE     + T NVVY
Sbjct: 142 SRKGLKLLVLDEEEKVTNTTKNVVY 68


>TC10293 similar to UP|Q84TG3 (Q84TG3) At2g35930, partial (19%)
          Length = 757

 Score = 27.7 bits (60), Expect = 0.49
 Identities = 13/31 (41%), Positives = 20/31 (63%)
 Frame = +3

Query: 22  SRKGLKILITDENGDCIDNTTNVVYKEVFQN 52
           S  GLK L++ +NGD I + T V+ K  F++
Sbjct: 654 SEPGLKTLLSFKNGDFIASLTRVMQKGFFES 746


>TC17624 
          Length = 615

 Score = 27.3 bits (59), Expect = 0.64
 Identities = 11/14 (78%), Positives = 14/14 (99%)
 Frame = +1

Query: 40  NTTNVVYKEVFQNV 53
           +T+NVVYKEVF+NV
Sbjct: 532 STSNVVYKEVFRNV 573


>TC9013 
          Length = 766

 Score = 26.9 bits (58), Expect = 0.84
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 28  ILITDENGDCIDNTTNVVYKEVFQNV 53
           ILI D +    ++T+NVVY EVF+ V
Sbjct: 627 ILICDGDDSNSNSTSNVVYTEVFRTV 704


>TC18533 weakly similar to UP|Q9LUL3 (Q9LUL3) Genomic DNA, chromosome 3, P1
           clone: MLN21, partial (4%)
          Length = 669

 Score = 23.5 bits (49), Expect = 9.3
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -3

Query: 13  FFWADYRVTSRKGL 26
           FFW  Y VT  KGL
Sbjct: 133 FFWFQYHVTVSKGL 92


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.327    0.140    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 926,039
Number of Sequences: 28460
Number of extensions: 7650
Number of successful extensions: 46
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of query: 53
length of database: 4,897,600
effective HSP length: 29
effective length of query: 24
effective length of database: 4,072,260
effective search space: 97734240
effective search space used: 97734240
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)