TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124952.8 - phase: 0 /pseudo
         (819 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP032479                                                              226  9e-60
TC9213                                                                164  4e-41
BP037632                                                               30  1.5
TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine ...    30  2.0
AV415701                                                               28  4.5
BP072396                                                               28  5.8
AV425084                                                               28  7.6
TC12939                                                                27  10.0

>BP032479 
          Length = 615

 Score =  226 bits (577), Expect = 9e-60
 Identities = 112/137 (81%), Positives = 126/137 (91%)
 Frame = +2

Query: 77  NFCTDIAGNSFTRMPNSSVYIHIDRRKVYVNIRTHVPEKLVQINSETRTVQATNDHNKLK 136
           +FC+DIAGN+FTRMPNSSVYIH DRRK YVNIR HVPEKL+Q+NSETRTVQATND++KLK
Sbjct: 8   HFCSDIAGNNFTRMPNSSVYIHFDRRKAYVNIRIHVPEKLLQLNSETRTVQATNDYDKLK 187

Query: 137 VYLYFSAPVLNSSTEIMNSLKVSQGSLLPTSAENLGNRRFGFMIANISSTAIISVNFNSK 196
           V+LYFSAPVLNSSTEIMNSL +S GSL+ TSA+  GNRRFGFMIANISST+IISV+FNS+
Sbjct: 188 VFLYFSAPVLNSSTEIMNSLNISXGSLVQTSAKTRGNRRFGFMIANISSTSIISVDFNSE 367

Query: 197 SIITRQGTQVSPNAPFT 213
           SIITRQGT VSP AP T
Sbjct: 368 SIITRQGTPVSPTAPVT 418


>TC9213 
          Length = 578

 Score =  164 bits (416), Expect = 4e-41
 Identities = 87/134 (64%), Positives = 99/134 (72%), Gaps = 1/134 (0%)
 Frame = +3

Query: 687 KSLFRGLKVASIGFVLYFIPQKWIKNLEKKLPQNGHANSETRDNALIAERCMHSGSRSSG 746
           KS  + +K+ASIG ++YF P     +LEKKLPQNGH N +T       ER   SGSRSSG
Sbjct: 3   KSFLKVMKIASIGILVYFFPHPCTYHLEKKLPQNGHGNGDTG-----LERYRSSGSRSSG 167

Query: 747 -TPDIPWLKRVRELAKGSFSKDRSGVQITDPSTSSTTRWSGFWGNKRSGSSSSDYKPKPK 805
            TPD PWLKR+REL K SF ++RSG  I DPSTSSTTRWSGFWGNKRSGSSSSD+K KP 
Sbjct: 168 GTPDKPWLKRLRELGKLSFGRERSGA-INDPSTSSTTRWSGFWGNKRSGSSSSDFKSKPS 344

Query: 806 KALDEDLEAIFASK 819
             L +DLEAIFASK
Sbjct: 345 STLHQDLEAIFASK 386


>BP037632 
          Length = 503

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 768 RSGVQITDPSTSSTTRWSGFWGNKRSGSSS 797
           RS + +    TS++  WSG W NKRS +++
Sbjct: 461 RSHIHLFPTPTSASYNWSGKWNNKRSHATN 372


>TC14474 weakly similar to GB|AAA74598.1|598099|CSSPRP protamine P1
           {Caenolestes fuliginosus;} , partial (49%)
          Length = 1266

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = -2

Query: 740 SGSRSSGTPDIPWLKRVRELAKGSFSKDRSGVQITDPSTSSTTRWSGFWGNKRSGSSSSD 799
           +G  S+ T  + + +RV ++    F ++ S  + T     +    +G W    S SS S 
Sbjct: 806 AGPHSATTDGLRFRRRVSQIPTSKFPREPSAAETTTAG-DAVEELAGAWSGLSS*SSKSS 630

Query: 800 YKPKP 804
            KP P
Sbjct: 629 PKPNP 615


>AV415701 
          Length = 418

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 548 EAPFIQKLFGILRIYFVF-LESIRRVSLGILAGVFIHTRSQSSKSPIIIMLSITSFMLFF 606
           + PF Q +   +R+   F L SI   S+    G F HTRSQ  +   + +++   FML  
Sbjct: 145 QCPFSQNIKIKMRVLERFQLYSISNFSMA--KGKFTHTRSQGKRWSTVTLVASMLFMLTL 318

Query: 607 MVL 609
           ++L
Sbjct: 319 VIL 327


>BP072396 
          Length = 420

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/32 (46%), Positives = 17/32 (52%)
 Frame = -2

Query: 763 SFSKDRSGVQITDPSTSSTTRWSGFWGNKRSG 794
           SF +    V + DPS SST      WGN RSG
Sbjct: 206 SFRRCCGAVLMRDPSRSSTV*LIVLWGNLRSG 111


>AV425084 
          Length = 252

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 338 VGSSPFGSSSSSAKALATIPNMLLGQNLNYGASVYG-SPLTSSEY 381
           VG   F SSSSS+    ++PN   G   +Y A  YG SP +   Y
Sbjct: 27  VGGRSFSSSSSSSSRSYSVPNPSPG--FSYSAPYYGPSPFSGGFY 155


>TC12939 
          Length = 551

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 18/59 (30%), Positives = 26/59 (43%)
 Frame = +3

Query: 321 IPSFSVPWESGPMSLFMVGSSPFGSSSSSAKALATIPNMLLGQNLNYGASVYGSPLTSS 379
           +P+F+ P E+G      V  S  GSSS    +   +P         +  S  GSPL+ S
Sbjct: 120 VPAFASPPETG------VSVSAAGSSSVLFNSWLGVPEFASPSEAGFSLSAAGSPLSGS 278


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.325    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,665,744
Number of Sequences: 28460
Number of extensions: 190686
Number of successful extensions: 1356
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1354
length of query: 819
length of database: 4,897,600
effective HSP length: 98
effective length of query: 721
effective length of database: 2,108,520
effective search space: 1520242920
effective search space used: 1520242920
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)