BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124952.2 - phase: 0
(880 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AI967334 40 0.002
BP067368 38 0.008
TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetyla... 35 0.052
TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, ... 35 0.052
TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protei... 34 0.089
BP048314 34 0.12
AV422227 33 0.20
BP036655 33 0.26
AV428658 33 0.26
TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%) 33 0.26
TC15412 similar to PIR|T10841|T10841 inorganic diphosphatase - ... 33 0.26
TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromos... 32 0.34
TC19281 similar to UP|Q9LSG4 (Q9LSG4) Genomic DNA, chromosome 3,... 32 0.44
AV427333 28 0.46
BP034655 32 0.57
AV767790 31 0.75
TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Ni... 31 0.75
TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, ... 31 0.75
CN825720 30 1.3
TC20096 30 1.3
>AI967334
Length = 372
Score = 39.7 bits (91), Expect = 0.002
Identities = 17/26 (65%), Positives = 18/26 (68%)
Frame = +2
Query: 270 REALEEVRDRDRDRDRDRDRDAPVSC 295
R E RDRDRDRDRDRDRD + C
Sbjct: 56 RSKRERERDRDRDRDRDRDRDGALQC 133
Score = 37.4 bits (85), Expect = 0.010
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +2
Query: 272 ALEEVRDRDRDRDRDRDRDAPVSCEVQCADNSP 304
A R+R+RDRDRDRDRD +QC + SP
Sbjct: 50 AARSKRERERDRDRDRDRDRDRDGALQCLELSP 148
>BP067368
Length = 322
Score = 37.7 bits (86), Expect = 0.008
Identities = 30/99 (30%), Positives = 41/99 (41%)
Frame = -2
Query: 233 RESNNRVEEHGVSSVRKEEKDSLIVNDEVEETKDIGDREALEEVRDRDRDRDRDRDRDAP 292
RE N + S R ++KD + DR+ E+ RDRDR RDRDRD
Sbjct: 252 REDRNVDRDREKSRERVKDKDGERERSRERSSDRARDRDHREDRHHRDRDRTRDRDRD-- 79
Query: 293 VSCEVQCADNSPDLDLLPEEDPQKSLNITDGGSEGKGNR 331
+ D D+ ED +TD G E + +R
Sbjct: 78 -------RERERDRDVTEIED------VTDRGRERERDR 1
>TC8507 similar to UP|Q8LJS2 (Q8LJS2) Nucleolar histone deacetylase
HD2-P39, partial (40%)
Length = 620
Score = 35.0 bits (79), Expect = 0.052
Identities = 26/99 (26%), Positives = 39/99 (39%)
Frame = +3
Query: 250 EEKDSLIVNDEVEETKDIGDREALEEVRDRDRDRDRDRDRDAPVSCEVQCADNSPDLDLL 309
EE DS D+ ++ D D E + D D D D + PV Q + D L
Sbjct: 6 EEDDS----DDEDDEDDDSDEEMDDADSDSDESDSDDTDEETPVKKADQGKKRANDSALK 173
Query: 310 PEEDPQKSLNITDGGSEGKGNRYSKNDEAGASGDAQREN 348
+K+ NIT ++GK ++ G G E+
Sbjct: 174 TPVSTKKAKNITPEKTDGKKTGHTATPHPGKKGGKNSES 290
>TC10249 similar to UP|Q84LL9 (Q84LL9) Salt tolerance protein 3, partial
(35%)
Length = 1096
Score = 35.0 bits (79), Expect = 0.052
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 239 VEEHGVSSVRKEEKDSLIVNDEVEETKDIGDREALEEVRDRDRDRDRDRDRD 290
+EE ++ R+ E+ E E K GD E+ RD+DRDR+RDR RD
Sbjct: 151 IEEERLAREREAEERRKRKEQEYER-KRRGDSSDREKHRDKDRDRERDRYRD 303
Score = 30.8 bits (68), Expect = 0.98
Identities = 21/58 (36%), Positives = 28/58 (48%)
Frame = +1
Query: 233 RESNNRVEEHGVSSVRKEEKDSLIVNDEVEETKDIGDREALEEVRDRDRDRDRDRDRD 290
RE+ R + RK DS +D + DRE + RDRD DR+R R+RD
Sbjct: 178 REAEERRKRKEQEYERKRRGDS---SDREKHRDKDRDRER-DRYRDRDSDRERSRERD 339
>TC19998 similar to UP|RED_HUMAN (Q13123) Red protein (RER protein) (IK
factor) (Cytokine IK), partial (6%)
Length = 492
Score = 34.3 bits (77), Expect = 0.089
Identities = 14/14 (100%), Positives = 14/14 (100%)
Frame = +1
Query: 277 RDRDRDRDRDRDRD 290
RDRDRDRDRDRDRD
Sbjct: 325 RDRDRDRDRDRDRD 366
Score = 32.7 bits (73), Expect = 0.26
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +1
Query: 277 RDRDRDRDRDRDRD 290
RDRDRDRDRDR+RD
Sbjct: 337 RDRDRDRDRDRERD 378
Score = 32.7 bits (73), Expect = 0.26
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = +1
Query: 277 RDRDRDRDRDRDRD 290
RDRDRDRDRDRDR+
Sbjct: 331 RDRDRDRDRDRDRE 372
Score = 31.6 bits (70), Expect = 0.57
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 269 DREALEEVRDRDRDRDRDRDRD 290
+R + RDRDRDRDR+RDR+
Sbjct: 319 NRRDRDRDRDRDRDRDRERDRE 384
Score = 31.2 bits (69), Expect = 0.75
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = +1
Query: 277 RDRDRDRDRDRDRD 290
RDRDRDR+RDR+RD
Sbjct: 349 RDRDRDRERDRERD 390
Score = 31.2 bits (69), Expect = 0.75
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = +1
Query: 277 RDRDRDRDRDRDRD 290
RDRDR+RDR+RDRD
Sbjct: 355 RDRDRERDRERDRD 396
Score = 31.2 bits (69), Expect = 0.75
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = +1
Query: 277 RDRDRDRDRDRDRD 290
RDR+RDR+RDRDRD
Sbjct: 361 RDRERDRERDRDRD 402
Score = 29.6 bits (65), Expect = 2.2
Identities = 11/14 (78%), Positives = 14/14 (99%)
Frame = +1
Query: 277 RDRDRDRDRDRDRD 290
R+RDR+RDRDRDR+
Sbjct: 367 RERDRERDRDRDRE 408
Score = 29.3 bits (64), Expect = 2.8
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +1
Query: 269 DREALEEVRDRDRDRDRDRDR 289
DR+ E RDR+RDRDRDR+R
Sbjct: 352 DRDRDRE-RDRERDRDRDRER 411
>BP048314
Length = 394
Score = 33.9 bits (76), Expect = 0.12
Identities = 22/65 (33%), Positives = 33/65 (49%)
Frame = +1
Query: 88 GSSGLELYGDEGDELSMTGLDSSELIGNNGIEESDGNENGGEVGEREIETEEEEEEEFSE 147
G GL + DEL +D +E++ + D + G+ E E E EEEEEEE E
Sbjct: 58 GCLGLSCFSS--DELGGVCIDLNEVLVMGRKIKGDVSGGAGDKHEEEEEEEEEEEEEEEE 231
Query: 148 GDDSM 152
+++M
Sbjct: 232 EEEAM 246
>AV422227
Length = 482
Score = 33.1 bits (74), Expect = 0.20
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 613 FLSPEDSHPSSPVSNSPVSLSSFTRGENIRNSSTWGKTISL 653
F+SP SP + SP+SLS+F+ G IR +W K + L
Sbjct: 384 FISP------SPFTLSPLSLSTFSTGSGIRTVESWKKILDL 280
>BP036655
Length = 556
Score = 32.7 bits (73), Expect = 0.26
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Frame = -3
Query: 79 DSNRKSFQYGSSGLELYGDEGDELSMTGLDSSELIGNNGIEESDGNENGGEVGEREIETE 138
D + + GL GD+ + + E ++ I + + ++ E E EIETE
Sbjct: 437 DGRLRLHLFEEEGLSDDGDDDEVVDEEEEVVEEWSDDDDINDDESDDEVEEESETEIETE 258
Query: 139 EEEEEEFSEG----DDSM----FNYGSGCDGDNENEFY 168
+EEEEE G +D M FN S C + +
Sbjct: 257 KEEEEEEECGVENVEDEMGVKKFNRPSRCKESGNRDIF 144
>AV428658
Length = 392
Score = 32.7 bits (73), Expect = 0.26
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 273 LEEVRDRDRDRDRDRDRD 290
L + R+RDRDRDRDRDRD
Sbjct: 33 LLQSRNRDRDRDRDRDRD 86
Score = 32.0 bits (71), Expect = 0.44
Identities = 13/13 (100%), Positives = 13/13 (100%)
Frame = +3
Query: 277 RDRDRDRDRDRDR 289
RDRDRDRDRDRDR
Sbjct: 51 RDRDRDRDRDRDR 89
>TC18688 weakly similar to UP|Q9LP77 (Q9LP77) T1N15.9, partial (13%)
Length = 514
Score = 32.7 bits (73), Expect = 0.26
Identities = 18/46 (39%), Positives = 23/46 (49%)
Frame = -1
Query: 106 GLDSSELIGNNGIEESDGNENGGEVGEREIETEEEEEEEFSEGDDS 151
G+ G+ G E +G GGE+ E EEE+EEE E DS
Sbjct: 196 GVPEKRSSGDGGAES*EGGAFGGEIWFNERGEEEEDEEEEEEERDS 59
Score = 31.6 bits (70), Expect = 0.57
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Frame = -1
Query: 98 EGDELSMTGLDSSELIGNNGI------EESDGNENGGEVGEREIETEEEEEEEFSEGDDS 151
E D+ T EL G + E G E GGE +ETE E E G+D+
Sbjct: 484 EADKAGET*KSRRELTGEEILLEVEVAERGAGGEVGGEWAGEGVETETESAEVGEGGEDA 305
Query: 152 MFNY-GSGCDGDNENEFYSMKGENVSSE 178
M+ G G G+ + E G V +E
Sbjct: 304 MWELAGEGDGGEADLEDVGGVGVAVDAE 221
>TC15412 similar to PIR|T10841|T10841 inorganic diphosphatase - mung bean
{Vigna radiata;} , partial (20%)
Length = 536
Score = 32.7 bits (73), Expect = 0.26
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = -2
Query: 88 GSSGLELYGDE---GDELSMTGLDSSELIGNNGIEESDGNEN-GGEVGEREI----ETEE 139
G SG+ G + GDE L+ SE N+G +DGN N G E+ E++ E EE
Sbjct: 199 GGSGVSSGGGDLNLGDE---EPLEESEDDSNDG---ADGN*NLGSEIWEKDCTHGGEEEE 38
Query: 140 EEEEEFSEG 148
EEEEE EG
Sbjct: 37 EEEEEEEEG 11
>TC8412 weakly similar to UP|Q9LW00 (Q9LW00) Genomic DNA, chromosome 3, P1
clone: MSJ11, partial (39%)
Length = 1403
Score = 32.3 bits (72), Expect = 0.34
Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +3
Query: 119 EESDGNENGGEVGEREIE---TEEEEEEEFSEGDDSMFNYGSGCDGDNENEFYSMKGEN- 174
E +DG + G++ + E ++E+ +++ +EG D++ N G ++E +
Sbjct: 633 ENTDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKDDGSGEPEKSEAAPTTEQKI 812
Query: 175 -VSSEFYSSRSVSLYEEGEVRNENPLLMNSSVAFGSHDLD 213
V E ++E GE++++ +N F HD++
Sbjct: 813 EVEGENKEEHDRGIHESGEIKDKEGAKVNDEEHFKVHDIN 932
Score = 29.3 bits (64), Expect = 2.8
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Frame = +3
Query: 259 DEVEETKDI------GDREALEEVRDRDRDRDRDRDRD---APVSCEVQCADNSPDLDLL 309
+E EETKD+ ++A++E +D ++ D D ++D A + Q + D D+
Sbjct: 435 EEKEETKDVEMQEAGETKDAVKENQDENKAEDTDVNQDEKKAEATDANQDEKRAEDADVK 614
Query: 310 PEEDPQKSLNITDG-GSEGKGN--------RYSKNDEAGASGDAQRENLD 350
P ++ TDG EGK N K D+ GA G +N D
Sbjct: 615 EPTHPGEN---TDGPNDEGKLNTADEELQASKEKVDDKGAEGSDAVQNKD 755
>TC19281 similar to UP|Q9LSG4 (Q9LSG4) Genomic DNA, chromosome 3, P1 clone:
MJL12, partial (8%)
Length = 549
Score = 32.0 bits (71), Expect = 0.44
Identities = 16/30 (53%), Positives = 18/30 (59%)
Frame = +1
Query: 119 EESDGNENGGEVGEREIETEEEEEEEFSEG 148
E GN N G+ GE E EEE+EEE EG
Sbjct: 52 ESYSGNTNKGKKGEVESTDEEEDEEEEMEG 141
>AV427333
Length = 387
Score = 28.5 bits (62), Expect(2) = 0.46
Identities = 13/30 (43%), Positives = 15/30 (49%)
Frame = +3
Query: 600 SRFFSSPPRALVWFLSPEDSHPSSPVSNSP 629
S +F SPP F P HPS P S+ P
Sbjct: 153 SHYFKSPPPPSHSFAPPPRGHPSPPPSSPP 242
Score = 21.9 bits (45), Expect(2) = 0.46
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = +1
Query: 671 HHTCAGCHRH 680
HHTCA H H
Sbjct: 274 HHTCAPRHHH 303
>BP034655
Length = 517
Score = 31.6 bits (70), Expect = 0.57
Identities = 19/52 (36%), Positives = 26/52 (49%)
Frame = +1
Query: 117 GIEESDGNENGGEVGEREIETEEEEEEEFSEGDDSMFNYGSGCDGDNENEFY 168
G+ + D E E E E E EEEEEEE E ++ D ++E+E Y
Sbjct: 127 GLSDDDEEEEEEEEEEEEEEEEEEEEEEEEEDEED--------DEEDEDEDY 258
Score = 27.7 bits (60), Expect = 8.3
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 100 DELSMTGLDSSELIGNNGIEESDGNENGGEVGEREIETEEEEEEEFSEGDD 150
+E++ L +++ ++ EE + E E E E E EEEEEE+ E DD
Sbjct: 88 NEIAAAHLTAADFGLSDDDEEEEEEEEEEEEEEEEEEEEEEEEED--EEDD 234
>AV767790
Length = 617
Score = 31.2 bits (69), Expect = 0.75
Identities = 30/109 (27%), Positives = 45/109 (40%)
Frame = +3
Query: 89 SSGLELYGDEGDELSMTGLDSSELIGNNGIEESDGNENGGEVGEREIETEEEEEEEFSEG 148
S GL +YG EG GL SS + D E+ G+VG
Sbjct: 228 SKGLMMYGTEGTG----GLTSST-------NQLDDMEHFGDVGSL--------------- 329
Query: 149 DDSMFNYGSGCDGDNENEFYSMKGENVSSEFYSSRSVSLYEEGEVRNEN 197
DD++ ++ S DGD + F ++K +S++ S E G +R N
Sbjct: 330 DDNVESFLSQDDGDGRDLFGTLKRNPSEHATDASKAFSFSEVGSIRKSN 476
>TC10870 similar to GB|CAA77438.1|2924285|CHNTXX Ycf2 protein {Nicotiana
tabacum;}, complete
Length = 6897
Score = 31.2 bits (69), Expect = 0.75
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +1
Query: 259 DEVEETKDIGDREALEEVRDRDRDRDRDRDRDAPVSCEVQCADNSPDLDLLPEED 313
D+ ++ DI D ++++ D + D DRD D + E+ N+ +D++PE D
Sbjct: 5029 DDSDDIDDIDDSHDIDDIDDSNDSDDIDRDLDTEL--ELLTMMNALTMDMMPEID 5187
>TC9200 similar to UP|Q8LLE6 (Q8LLE6) RNA-binding protein AKIP1, partial
(31%)
Length = 727
Score = 31.2 bits (69), Expect = 0.75
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 118 IEESDGNENGGEVGEREIETEEEEEEEFSEGDD 150
+EE + E E GE E E EEEEEE +E ++
Sbjct: 229 VEEEEEEEEEEEEGEEEEEEEEEEEEVEAEAEE 327
Score = 29.3 bits (64), Expect = 2.8
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +1
Query: 132 EREIETEEEEEEEFSEGDD 150
E E+E EEEEEEE EG++
Sbjct: 220 EEEVEEEEEEEEEEEEGEE 276
>CN825720
Length = 699
Score = 30.4 bits (67), Expect = 1.3
Identities = 20/67 (29%), Positives = 33/67 (48%), Gaps = 8/67 (11%)
Frame = -2
Query: 16 RLHQSDGLSRRSSFGAESDSERYCSASNSMMGTPNTSMSI--------RSAVTVFHDFSD 67
R + + LS SS G+ S +C+ +S + PN+S++I SA++VF
Sbjct: 530 RTSKMESLSSASSLGSNDFSSIFCNLLSSSLAWPNSSVAILSMSLSSELSAISVFKPSIS 351
Query: 68 IDFASSS 74
FA +S
Sbjct: 350 FCFALNS 330
>TC20096
Length = 503
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -3
Query: 703 CEYTGQLFCSSCHTNETAVLPARVLHHWDFTHYPVSQLAKSY 744
CEY + CS C ET + RVL W+ +PV ++K Y
Sbjct: 171 CEYMYPV-CSICSGQETWKIKGRVLRLWEM--FPVGHISKXY 55
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.315 0.133 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,366,582
Number of Sequences: 28460
Number of extensions: 233543
Number of successful extensions: 1560
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of query: 880
length of database: 4,897,600
effective HSP length: 98
effective length of query: 782
effective length of database: 2,108,520
effective search space: 1648862640
effective search space used: 1648862640
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Medicago: description of AC124952.2