TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124951.10 - phase: 0 
         (446 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC16733 weakly similar to UP|Q8W106 (Q8W106) AT3g27930/K24A2_2, ...   199  6e-52
TC9490 homologue to UP|Q8W1R5 (Q8W1R5) 26S proteasome regulatory...    29  1.4
BP062620                                                               28  4.0
AV778404                                                               27  6.8
TC12217                                                                27  6.8
BP041267                                                               27  8.9

>TC16733 weakly similar to UP|Q8W106 (Q8W106) AT3g27930/K24A2_2, partial
           (26%)
          Length = 629

 Score =  199 bits (507), Expect = 6e-52
 Identities = 93/110 (84%), Positives = 103/110 (93%)
 Frame = +3

Query: 337 LVKAKAGPKSSTMALAFKSWWKPSFTFSISATRDRADGQVQYGFGLQSESLREASYQRAD 396
           L+K K GP+ S+MALAFKSWWKPSFTFSISATRDRADGQ+QYGFG+ SESLREASYQRAD
Sbjct: 3   LLKXKVGPRISSMALAFKSWWKPSFTFSISATRDRADGQIQYGFGIXSESLREASYQRAD 182

Query: 397 PNFVMLTPSKEHLAEGIVWETGKRPMLQSDIDAGHFDGLPRELRPLDKIL 446
           PN+VMLTPSKEHLAEGI W TG+RPMLQSD+DAG F+GLPR+LRPLDKIL
Sbjct: 183 PNYVMLTPSKEHLAEGIAWTTGQRPMLQSDLDAGQFEGLPRDLRPLDKIL 332


>TC9490 homologue to UP|Q8W1R5 (Q8W1R5) 26S proteasome regulatory subunit
           IV, partial (20%)
          Length = 552

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 17/54 (31%), Positives = 25/54 (45%)
 Frame = +1

Query: 133 SCAYYPRYGFGAFGVFPLLLKNRTSSQIATFTADKVRQLYRETSQDSGVMGLRY 186
           S  YYPR  F  FG++ L+++    S + +     +  LY   SQ  G   L Y
Sbjct: 280 SILYYPRLSFFFFGIYVLVMQTNAHSFVLS-KLSFIHLLYSG*SQSWGQFNLHY 438


>BP062620 
          Length = 555

 Score = 27.7 bits (60), Expect = 4.0
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 8/30 (26%)
 Frame = +2

Query: 2   LIWKWIVSWYRNEVE--------SPPPVVL 23
           LIW W V W +N+ +        SPPP  L
Sbjct: 236 LIWNWFVEWMKNKPDLKGGNPDRSPPPADL 325


>AV778404 
          Length = 401

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 13  NEVESPPPVVLVPPLFDFPP 32
           NE  SPPP+ L PPL    P
Sbjct: 340 NEPTSPPPLTLSPPLSQLTP 399


>TC12217 
          Length = 495

 Score = 26.9 bits (58), Expect = 6.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 90  PLDQKPDENINGNALFRWQSDVNDP 114
           PL+  P EN+  +A++ WQ  V+ P
Sbjct: 289 PLNLNPQENLTTDAIYCWQFCVSSP 215


>BP041267 
          Length = 520

 Score = 26.6 bits (57), Expect = 8.9
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 288 LEENTVVGITNYIDFGFELQTSVDDAIAANNISDS 322
           LEEN V  +   ++ G    T VD +   N +SD+
Sbjct: 242 LEENNVAVVEKNVEAGSSTTTEVDKSGCVNTVSDA 346


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,037,919
Number of Sequences: 28460
Number of extensions: 108544
Number of successful extensions: 580
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of query: 446
length of database: 4,897,600
effective HSP length: 93
effective length of query: 353
effective length of database: 2,250,820
effective search space: 794539460
effective search space used: 794539460
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)