BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC124217.9 + phase: 0 /pseudo
(145 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI420177 29 0.36
BP043794 28 0.48
TC12534 similar to UP|Q9MAJ1 (Q9MAJ1) F27F5.26, partial (13%) 28 0.81
AV780255 27 1.4
TC11455 similar to UP|Q9ZUS8 (Q9ZUS8) At2g37380 protein, partial... 27 1.4
BP068482 27 1.8
BP048451 26 3.1
TC8994 homologue to UP|RS0_NEUCR (Q01291) 40S ribosomal protein ... 26 3.1
TC16109 25 4.0
TC19274 homologue to UP|Q9LFI3 (Q9LFI3) Transcription factor NF-... 25 4.0
BP037276 25 5.3
BP082866 25 6.9
TC16536 similar to UP|O22477 (O22477) Betaine aldehyde dehydroge... 25 6.9
TC17318 similar to UP|O65090 (O65090) Dimethyladenosine transfer... 25 6.9
TC9331 similar to AAL16128 (AAL16128) AT5g47540/MNJ7_13, partial... 25 6.9
BP050432 24 9.0
TC19782 weakly similar to UP|CAE54480 (CAE54480) Alpha glucosida... 24 9.0
TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%) 24 9.0
TC12231 weakly similar to UP|CAE54480 (CAE54480) Alpha glucosida... 24 9.0
>BI420177
Length = 444
Score = 28.9 bits (63), Expect = 0.36
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Frame = -1
Query: 63 LVCSHFG---GCLSVCVMRLL---LSKGACLSSSLTCLRRTYRYLWRTFLFWVSP 111
L+C FG GCL C R + L C L LRR R W + WV P
Sbjct: 243 LICRRFGVLFGCLRECW*RRVERRLVLVPCQHQLLLLLRRHRRRRWMWWWLWVEP 79
>BP043794
Length = 490
Score = 28.5 bits (62), Expect = 0.48
Identities = 11/24 (45%), Positives = 14/24 (57%)
Frame = +1
Query: 2 CIDYRRLIRPEGWIIFPCPSWTRC 25
CI R L R + W FP PS+ +C
Sbjct: 364 CISQRGLQRSKKWTFFPSPSFCQC 435
>TC12534 similar to UP|Q9MAJ1 (Q9MAJ1) F27F5.26, partial (13%)
Length = 941
Score = 27.7 bits (60), Expect = 0.81
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +3
Query: 73 SVCVMRLLL---SKGACLSSSLTCLRRTYRYLWRTFL 106
S C++ LL+ G C S+TCL R Y +LW+ L
Sbjct: 600 SQCLLELLIFMTDTGICDLMSITCLMRNY-WLWKNAL 707
>AV780255
Length = 550
Score = 26.9 bits (58), Expect = 1.4
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 57 QLSFSHLVCSHFGGCLSVCVM 77
Q ++ + CSHF GC + C++
Sbjct: 77 QKTWLAITCSHFSGCCNYCIL 139
>TC11455 similar to UP|Q9ZUS8 (Q9ZUS8) At2g37380 protein, partial (10%)
Length = 575
Score = 26.9 bits (58), Expect = 1.4
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = -2
Query: 14 WIIFPCPSWTRCLRG*RDKPFIAFWMGILGTTKLRC 49
W FPC R RG F W+GI+G + C
Sbjct: 565 WRRFPCGKQRRIWRGRSTCEFS*CWVGIMGCCRCCC 458
>BP068482
Length = 412
Score = 26.6 bits (57), Expect = 1.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 79 LLLSKGACLSSSLTCLRRTYRY 100
+LL + +CLSS T +R YRY
Sbjct: 202 MLLKRSSCLSSEFTTDQRFYRY 267
>BP048451
Length = 400
Score = 25.8 bits (55), Expect = 3.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -1
Query: 46 KLRCL*RIKRRQLSFSHLVCSHFGGCL 72
KL C *R K + F L+ S+ CL
Sbjct: 226 KLHCG*RAKEKNFGFDELIASYLCNCL 146
>TC8994 homologue to UP|RS0_NEUCR (Q01291) 40S ribosomal protein S0
(Ribosome-associated protein 1), partial (6%)
Length = 1009
Score = 25.8 bits (55), Expect = 3.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -1
Query: 4 DYRRLIRPEGWIIFPCPSWTRCLRG*RDKPFIAFW 38
D +RL R E + C W CLRG ++ A+W
Sbjct: 337 DEKRLKRIE---VVACSRWLWCLRGVEEEGVAAWW 242
>TC16109
Length = 581
Score = 25.4 bits (54), Expect = 4.0
Identities = 19/56 (33%), Positives = 25/56 (43%), Gaps = 6/56 (10%)
Frame = +3
Query: 58 LSFSHLVCSHFGG------CLSVCVMRLLLSKGACLSSSLTCLRRTYRYLWRTFLF 107
LS HL+ F G CL +R+ L G C S+ L + T + WR LF
Sbjct: 72 LSEDHLLMLQFCGAR*AI*CLG---LRIFLKFGRC*SAFLRLVLYTESF*WRMMLF 230
>TC19274 homologue to UP|Q9LFI3 (Q9LFI3) Transcription factor NF-Y,
CCAAT-binding-like protein, partial (45%)
Length = 554
Score = 25.4 bits (54), Expect = 4.0
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -1
Query: 76 VMRLLLSKGACLSSSLTCLRRTYRYLWRTFLFWVSP 111
+MRL+L+ G LS C R R LW L W+ P
Sbjct: 248 MMRLMLAIGRYLS----CSRMLERGLWSPPLSWLPP 153
>BP037276
Length = 516
Score = 25.0 bits (53), Expect = 5.3
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 59 SFSHLVCSHFGGCLSVCVM 77
S +HLVC HF ++C++
Sbjct: 80 SLTHLVCFHFSLIFTLCIL 24
>BP082866
Length = 470
Score = 24.6 bits (52), Expect = 6.9
Identities = 11/27 (40%), Positives = 13/27 (47%), Gaps = 2/27 (7%)
Frame = -2
Query: 2 CIDYRRLIRPEGWIIFPCPSWT--RCL 26
C R L P+ W+ F P W RCL
Sbjct: 385 CGPIRFLFVPKSWLAFTSPKWIQ*RCL 305
>TC16536 similar to UP|O22477 (O22477) Betaine aldehyde dehydrogenase ,
partial (71%)
Length = 1097
Score = 24.6 bits (52), Expect = 6.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +1
Query: 2 CIDYRRLIRPEGWIIFPCPSWTR 24
C Y IRP GW F PS R
Sbjct: 652 CAKYSHWIRP*GWCSFGIPSRCR 720
>TC17318 similar to UP|O65090 (O65090) Dimethyladenosine transferase ,
partial (19%)
Length = 544
Score = 24.6 bits (52), Expect = 6.9
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = -3
Query: 77 MRLLLSKGACLSSSLTC 93
++LLLS+G C+ + +TC
Sbjct: 116 LKLLLSQGMCICAEVTC 66
>TC9331 similar to AAL16128 (AAL16128) AT5g47540/MNJ7_13, partial (13%)
Length = 582
Score = 24.6 bits (52), Expect = 6.9
Identities = 12/22 (54%), Positives = 13/22 (58%)
Frame = -2
Query: 80 LLSKGACLSSSLTCLRRTYRYL 101
L + G CLSSSL C R R L
Sbjct: 467 LFNSGICLSSSLVC*RSRRRSL 402
>BP050432
Length = 529
Score = 24.3 bits (51), Expect = 9.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 1 MCIDYRRLIRPEGWIIFPCPSWTRCLRG*RDKPFIAFW 38
MCI R LI P+G ++ CLR K F+AFW
Sbjct: 289 MCIPKR*LIFPKGR---SSSLFSDCLRATFRKFFMAFW 185
>TC19782 weakly similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ,
partial (3%)
Length = 537
Score = 24.3 bits (51), Expect = 9.0
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 63 LVCSHFGGCLSVCVMRLLLSKGACLSSSLTCLRRTYRYLWRTFLFW 108
++C FG V ++ LL G CLSSS+ R + R FW
Sbjct: 103 MLCFIFG----VLLVPLLFPNGMCLSSSM-----VLRSMSRVVCFW 213
>TC7907 homologue to UP|O81133 (O81133) Expansin, partial (97%)
Length = 1313
Score = 24.3 bits (51), Expect = 9.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 53 IKRRQLSFSHLVCSHFGGCLSVCVMRLLLSKGACLSSSLTCL-RRTYRYLWRTFLFW 108
I + LS S+ H G C ++C + LLS + L L RR R W + W
Sbjct: 34 IPQTSLSTSYYYLPHNGNCSNLCHLSYLLSSQSLPPRHLW*LWRRMAR--WTCHILW 198
>TC12231 weakly similar to UP|CAE54480 (CAE54480) Alpha glucosidase II ,
partial (3%)
Length = 527
Score = 24.3 bits (51), Expect = 9.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 74 VCVMRLLLSKGACLSSSLTCLRRTYRYLWRTFLFW 108
V ++ LL G CLSSS+ RYL + L W
Sbjct: 230 VLLVPLLFPNGMCLSSSM-----VLRYLPKVGLIW 319
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.349 0.155 0.577
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,708,166
Number of Sequences: 28460
Number of extensions: 68115
Number of successful extensions: 753
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of query: 145
length of database: 4,897,600
effective HSP length: 82
effective length of query: 63
effective length of database: 2,563,880
effective search space: 161524440
effective search space used: 161524440
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.8 bits)
S2: 51 (24.3 bits)
Medicago: description of AC124217.9