TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124217.1 - phase: 0 /pseudo
         (1312 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BP065719                                                               49  5e-06
TC15593 weakly similar to UP|AAR15453 (AAR15453) Nuclear divisio...    29  4.2
TC11585 similar to UP|Q9ZWQ5 (Q9ZWQ5) UDP-glycose:flavonoid glyc...    29  5.5
BP043451                                                               28  9.4

>BP065719 
          Length = 567

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 1/159 (0%)
 Frame = +2

Query: 1   WFQNGSIQ-A*ICIGLI*ICVNGRIA*GVENP*INQIWWRNY*IHCRTHCLLFDRGR*YR 59
           WFQ G  +    C+ L       R +  +E P I+ +      +H RTH  + +R R   
Sbjct: 89  WFQRGFRE*TPFCVSLYRGGSRIRTSSRLEGPQIH*VLRGFRRVHGRTHSQVPNRSRRLS 268

Query: 60  KQREFKNEVFFKFFN*KCVHLVYNITPMIYLYLESIRKGIS*TVLHGPI*D*S*RVGQCS 119
            Q +FKNEV  +FFN KC++LV++    +  Y+  + K   *TVL G +       G C 
Sbjct: 269 HQ*KFKNEVLPEFFNQKCLYLVHHPRS*VSPYMGPVGKNFP*TVL*GRVQSKXEGPG*CQ 448

Query: 120 T*NV*IY**LFE*I*TP*G*MLYHAT*T*IGRNGCGWSR 158
                +Y**L + +*  *  ML+   *T        WSR
Sbjct: 449 KKASRVY**LPKQV*DA*ISMLHPCV*TRASCLXRWWSR 565


>TC15593 weakly similar to UP|AAR15453 (AAR15453) Nuclear division RFT1-like
           protein, partial (17%)
          Length = 753

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 14/46 (30%), Positives = 23/46 (49%)
 Frame = -2

Query: 505 TPSSKSPTEKWVFSSGKKSSYTSPPAKWVKRFTGTDNQNKAPVSKK 550
           T    SPTEKW+ + G+K S++      ++  T   N+   P  K+
Sbjct: 185 TQKQASPTEKWIINDGQKLSWSRNTFSEMRVITPESNRIIHPEGKQ 48


>TC11585 similar to UP|Q9ZWQ5 (Q9ZWQ5) UDP-glycose:flavonoid
           glycosyltransferase, partial (40%)
          Length = 609

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 493 TRHQNRGQVRTFTPSSKSPTEKWVFSSGKKS----SYTSPPAKWVKRFT 537
           T H +   V T   SS SP  KWV   G ++      TSPPA++  R T
Sbjct: 176 TEHADTTSVFT---SSNSPAPKWVSLVGSRTCSPHPTTSPPARYTWRLT 313


>BP043451 
          Length = 544

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/31 (41%), Positives = 21/31 (66%), Gaps = 3/31 (9%)
 Frame = +1

Query: 597 FKMIRKPATERIFPPLSA---VKENLHVEDE 624
           F M+    +++I+ PLSA   +KENLH+E +
Sbjct: 343 FPMVFSSCSQQIYSPLSA*ALLKENLHLESD 435


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.358    0.160    0.568 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,207,288
Number of Sequences: 28460
Number of extensions: 284687
Number of successful extensions: 3082
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2274
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 763
Number of HSP's gapped (non-prelim): 2425
length of query: 1312
length of database: 4,897,600
effective HSP length: 101
effective length of query: 1211
effective length of database: 2,023,140
effective search space: 2450022540
effective search space used: 2450022540
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 61 (28.1 bits)