TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC124215.2 + phase: 0 
         (358 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC12710 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine cytidy...   107  2e-24
TC18690 similar to UP|P93470 (P93470) Cholinephosphate cytidylyl...   104  3e-23
TC13341                                                                30  0.81
TC12936 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, pa...    27  4.0
TC14174 UP|PSBC_LOTJA (Q9BBT1) Photosystem II 44 kDa reaction ce...    27  6.9
AV411700                                                               26  9.0
BP032379                                                               26  9.0

>TC12710 similar to UP|Q84X92 (Q84X92) Phosphoethanolamine
           cytidylyltransferase, partial (33%)
          Length = 515

 Score =  107 bits (268), Expect = 2e-24
 Identities = 51/56 (91%), Positives = 53/56 (94%)
 Frame = +3

Query: 283 DFLLVGIHTDQTVSATRGLHRPIMSLHERSLSVLACRYVDEVIIGAPWEVSKDMVS 338
           DFLLVGIHTD TVS TRGLHRPIM LHERSLSVLACRYVDEVIIGAPWEVSKDM++
Sbjct: 6   DFLLVGIHTDHTVSETRGLHRPIMHLHERSLSVLACRYVDEVIIGAPWEVSKDMIT 173



 Score = 46.6 bits (109), Expect = 6e-06
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
 Frame = +3

Query: 82  DQLIVGVVSDDEIIANKG--PPVTPLHERLIMVNAVKWVDEVIPEAPYAITEEFMKKLFD 139
           D L+VG+ +D  +   +G   P+  LHER + V A ++VDEVI  AP+    E  K +  
Sbjct: 6   DFLLVGIHTDHTVSETRGLHRPIMHLHERSLSVLACRYVDEVIIGAPW----EVSKDMIT 173

Query: 140 EYNIDYIIHGD 150
            +NI  ++HG+
Sbjct: 174 TFNISLVVHGN 206


>TC18690 similar to UP|P93470 (P93470) Cholinephosphate cytidylyltransferase
           , partial (80%)
          Length = 845

 Score =  104 bits (259), Expect = 3e-23
 Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
 Frame = +2

Query: 53  KPIRVYMDGCFDMMHYGHCNALRQARAL--GDQLIVGVVSDDEIIANKGPPVTPLHERLI 110
           +P+RVY DG +D+ H+GH  +L QA+       L+VG  +D+     KG  V    ER  
Sbjct: 80  RPVRVYADGIYDLFHFGHAGSLEQAKKSFPNTYLLVGCCNDEVTHKYKGKTVMTEAERYE 259

Query: 111 MVNAVKWVDEVIPEAPYAITEEFMKKLFDEYNIDYIIHGDDPCVLPDG--TDAYAHAKKA 168
            +   KWVDEVIP+AP+ I +EF+    D++ IDY+ H   P     G   D Y   K  
Sbjct: 260 SLRHCKWVDEVIPDAPWVINQEFL----DKHRIDYVAHDALPYADTSGAANDVYEFVKAV 427

Query: 169 GRYKQIKRTEGVSSTDIVGRML 190
           G++K+ +RT+G+S++DI+ R++
Sbjct: 428 GKFKETQRTDGISTSDIIMRIV 493



 Score = 56.6 bits (135), Expect = 6e-09
 Identities = 31/82 (37%), Positives = 47/82 (56%), Gaps = 2/82 (2%)
 Frame = +2

Query: 258 VYIDGAFDLFHAGHVEILRLARDR--GDFLLVGIHTDQTVSATRGLHRPIMSLHERSLSV 315
           VY DG +DLFH GH   L  A+      +LLVG   D+     +G  + +M+  ER  S+
Sbjct: 92  VYADGIYDLFHFGHAGSLEQAKKSFPNTYLLVGCCNDEVTHKYKG--KTVMTEAERYESL 265

Query: 316 LACRYVDEVIIGAPWEVSKDMV 337
             C++VDEVI  APW ++++ +
Sbjct: 266 RHCKWVDEVIPDAPWVINQEFL 331


>TC13341 
          Length = 616

 Score = 29.6 bits (65), Expect = 0.81
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -3

Query: 285 LLVGIHTDQTVSATRGLHRPIMSLHERSLSVLACRYVDEVIIGAPWEVSKDMVSLIFACL 344
           +L+G  T  T S +R   R IM+    SLSV+ CRY         WE   ++V +IF  +
Sbjct: 200 ILLGFFTP-TPSTSRS--RSIMTHWSCSLSVVICRYF--------WESRLNVVVIIFIQI 54

Query: 345 FFMLFVY 351
           +F L  +
Sbjct: 53  YFRLTTF 33


>TC12936 homologue to UP|Q9FEZ7 (Q9FEZ7) Ribosomal protein L2, partial (48%)
          Length = 491

 Score = 27.3 bits (59), Expect = 4.0
 Identities = 11/23 (47%), Positives = 18/23 (77%)
 Frame = +2

Query: 335 DMVSLIFACLFFMLFVYDVSFRL 357
           D+V++IF+CLFF +F   +S +L
Sbjct: 383 DIVNIIFSCLFFQIFF**LSVKL 451


>TC14174 UP|PSBC_LOTJA (Q9BBT1) Photosystem II 44 kDa reaction center protein
            (P6 protein) (CP43), complete
          Length = 3406

 Score = 26.6 bits (57), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (57%)
 Frame = -2

Query: 8    TSSVESYAAVKWVVGVIIVGVSVLGFYSSSG 38
            TSS+ S+ ++KW  G     +S+  F+ S G
Sbjct: 2958 TSSIRSHVSIKWSHGKNRFKISINSFFKSRG 2866


>AV411700 
          Length = 429

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 12/42 (28%), Positives = 21/42 (49%)
 Frame = -3

Query: 211 FSNGRGQQKFEDGGVVASGTRVSHFLPTSRRIVQFSNGRSPG 252
           FS G+G+++   G  + + T + HF  T  +  + S G   G
Sbjct: 400 FSEGKGKKRRRQGQFMLNSTEIEHFA*TKLQSPRRSRGNMLG 275


>BP032379 
          Length = 441

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +3

Query: 235 FLPTSRRIVQFSNGRSP 251
           FLP SRR   FS GRSP
Sbjct: 219 FLPLSRRFSAFSVGRSP 269


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.324    0.141    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,135,733
Number of Sequences: 28460
Number of extensions: 82629
Number of successful extensions: 375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of query: 358
length of database: 4,897,600
effective HSP length: 91
effective length of query: 267
effective length of database: 2,307,740
effective search space: 616166580
effective search space used: 616166580
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)